LOC103037976 (LOC103037976,LOC108437127)


Basic Information

Item Value
gene id LOC103037976
gene name LOC103037976,LOC108437127
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 21611572 ~ 21616436 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007236398.3
aagtgcGCAGAAGAAGGAGGAGCGGATTTAGAGGAGTTTGGGGAGTGCGAGCTGTCACACCGGGGCCGCGAGGCAGGGACGGCGGAGCAGCGCGCGATGTGACTGTGCGAGTAACGGGAATACCGGGCCCGTGATCTGAGCACATGCAGCACCTGCCTGATCCGCAGGTACTTCATACACCCACTTCATCCCGCATCCTTCCGTTAATTAAACTACTAAACGGACAGCCGTAAACTGTTGATGTTGATGTTTGTTCCGTCGCTTCCCGGATAAACAGCAAACTTCCTGCAACAAGTGGAATTCCCTCTTTTTTCGCTCTTGTTTTGAAACCGCGTGGGTTGCGCGCGAGCCCCGCTATGGAGGAGCAAAAGGACCAAATCGGGCGCGACTCAAGCGAGGCTGAGCGCGCGGCGCCCTCCCCCCCGGTGCTGCCCCACCAGGCAGCGCAGCAGCTCCACCGGACCACCAACTTTTTCATAGACAACATCCTGAGGCCGGATTTCGGCTGCAGGAAAGAGCTCGCGGCGCGGGAGCGCGAGCGGGAGAGGGAAAGGGAGCGCGCGCACAACGCGGGCCGCGAGAACGTCAACCCTCTGGCCGCGAGGCCGACGCATACGGGCGGCCTTCTTCGCCACGACGCCAGCGGAGGCAGCGATTGCTCGTCGTCTTCgtcatcctcttcctcctcgtCGCCGTCGTCATCGTCGCCATCCTCCAAGACGTCGTCTGCCAAACTGGGTACGGATGGAAACGGAAGCACGACAGCCAAGTACGGGGAGCACGCGCCCATAATGGAAGTGAACGGGAACGGGGGGACCCCGCCAGCCAAAGAGTCGCAGCCGTTACTGTGGCCAGCGTGGGTTTATTGTACCCGGTACTCGGATAGACCGTCATCCGGCCCGAGGACGCGCaaactgaagaaaaagaagagtgaAAAGGAGGACAAGCGGCCACGGACGGCCTTCACGGCCGAGCAGCTGCAGAGACTCAAGGCCGAGTTCCAGGCCAACCGCTACATCACGGAGCAGAGGAGGCAATCACTGGCCCAGGAACTGAACCTCAACGAATCCCAGATAAAAATCTGGTTCCAGAACAAAAGGGCCAAAATCAAAAAAGCCACTGGTTTTAAGAACGGCCTTGCCCTGCAGCTCATGGCCCAAGGACTCTACAACCATTCCACCACCACGGTTCAAGACGAGAAAGAGGATAGCGAGTGACCACAAGGCCTCTCGGTTCTTCGTTCTATAATGCCTAGAGACGCTGACCCAAAGCGACctggttgttgttgtttttaattttccataTCCTTTGTGCAACAAATGTATGGAGAAGAGAACTCTTGACCTTCTGAAGAGACCCTATTTAAACAGATCTATCATAGGCTACAATATACGGCCATACACCTAAATACGAACACTACggagatttatatatatagcccAAAACTGTaagatgtatatatttaaattcagGTAGGGGGTCTCCTTACTTGCTGGACGTTTATATCGTTTCACCCCCACCTTCCTGATGTTGTCGCTCACAATCCCAGTAGTTTTTGTGATACCCCTCCTGTCTCTAAAACTCGAAAAATCTATCTCACCAATCCACACATGCGTGACTGACTGAACTGAACGCTTCAAGCCAAagattttaatatgtttagaGATTATGttgtctgaaataataaaaaaggtagaATGTGCAA
>XM_015602212.2
aagtgcGCAGAAGAAGGAGGAGCGGATTTAGAGGAGTTTGGGGAGTGCGAGCTGTCACACCGGGGCCGCGAGGCAGGGACGGCGGAGCAGCGCGCGATGTGACTGTGCGAGTAACGGGAATACCGGGCCCGTGATCTGAGCACATGCAGCACCTGCCTGATCCGCAGGTACTTCATACACCCACTTCATCCCGCATCCTTCCGTTAATTAAACTACTAAACGGACAGCCGTAAACTGTTGATGTTGATGTTTGTTCCGTCGCTTCCCGGATAAACAGCAAACTTCCTGCAACAAGTGGAATTCCCTCTTTTTTCGCTCTTGTTTTGAAACCGCGTGGGTTGCGCGCGAGCCCCGCTATGGAGGAGCAAAAGGACCAAATCGGGCGCGACTCAAGCGAGGCTGAGCGCGCGGCGCCCTCCCCCCCGGTGCTGCCCCACCAGGCAGCGCAGCAGCTCCACCGGACCACCAACTTTTTCATAGACAACATCCTGAGGCCGGATTTCGGCTGCAGGAAAGAGCTCGCGGCGCGGGAGCGCGAGCGGGAGAGGGAAAGGGAGCGCGCGCACAACGCGGGCCGCGAGAACGTCAACCCTCTGGCCGCGAGGCCGACGCATACGGGCGGCCTTCTTCGCCACGACGCCAGCGGAGGCAGCGATTGCTCGTCGTCTTCgtcatcctcttcctcctcgtCGCCGTCGTCATCGTCGCCATCCTCCAAGACGTCGTCTGCCAAACTGGGTACGGATGGAAACGGAAGCACGACAGCCAAGTACGGGGAGCACGCGCCCATAATGGAAGTGAACGGGAACGGGGGGACCCCGCCAGCCAAAGAGTCGCAGCCGTTACTGTGGCCAGCGTGGGTTTATTGTACCCGGTACTCGGATAGACCGTCATCCGTCTCCACACCAGGCCCGAGGACGCGCaaactgaagaaaaagaagagtgaAAAGGAGGACAAGCGGCCACGGACGGCCTTCACGGCCGAGCAGCTGCAGAGACTCAAGGCCGAGTTCCAGGCCAACCGCTACATCACGGAGCAGAGGAGGCAATCACTGGCCCAGGAACTGAACCTCAACGAATCCCAGATAAAAATCTGGTTCCAGAACAAAAGGGCCAAAATCAAAAAAGCCACTGGTTTTAAGAACGGCCTTGCCCTGCAGCTCATGGCCCAAGGACTCTACAACCATTCCACCACCACGGTTCAAGACGAGAAAGAGGATAGCGAGTGACCACAAGGCCTCTCGGTTCTTCGTTCTATAATGCCTAGAGACGCTGACCCAAAGCGACctggttgttgttgtttttaattttccataTCCTTTGTGCAACAAATGTATGGAGAAGAGAACTCTTGACCTTCTGAAGAGACCCTATTTAAACAGATCTATCATAGGCTACAATATACGGCCATACACCTAAATACGAACACTACggagatttatatatatagcccAAAACTGTaagatgtatatatttaaattcagGTAGGGGGTCTCCTTACTTGCTGGACGTTTATATCGTTTCACCCCCACCTTCCTGATGTTGTCGCTCACAATCCCAGTAGTTTTTGTGATACCCCTCCTGTCTCTAAAACTCGAAAAATCTATCTCACCAATCCACACATGCGTGACTGACTGAACTGAACGCTTCAAGCCAAagattttaatatgtttagaGATTATGttgtctgaaataataaaaaaggtagaATGTGCAA

Function

NR:

description
homeobox protein engrailed-1-B-like isoform X1

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0048663 neuron fate commitment biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09319 EN; homeobox protein engrailed

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007236398.3 False 1705 mRNA 0.53 2 21611572 21616436
XM_015602212.2 True 1717 mRNA 0.53 2 21611572 21616436

Neighbor

gene id symbol gene type direction distance location
nrp2 nrp2,nrp2a,LOC107556288,LOC107750056,LOC107749808 coding upstream 49918 21417436 ~ 21561654 (+)
mdh1b NA coding upstream 654539 20944945 ~ 20957033 (+)
LOC103031253 hecw2,LOC107676038,LOC108258347,LOC107674007,LOC107706834 coding upstream 702797 20860945 ~ 20908775 (+)
gtf3c3 gtf3c3,LOC107750061 coding upstream 784297 20804054 ~ 20827275 (+)
LOC103029333 LOC108437114,LOC108258365 coding upstream 811041 20783070 ~ 20800531 (+)
LOC103035679 NA coding downstream 309913 21926349 ~ 21934395 (+)
LOC103046323 LOC108441470 coding downstream 696790 22313226 ~ 22480428 (+)
LOC111193458 NA coding downstream 893010 22509446 ~ 22517576 (+)
alkbh5 alkbh5 coding downstream 976202 22592638 ~ 22599854 (+)
LOC103042026 mief2,LOC107725398,LOC107564637,LOC108258856,LOC107692671 coding downstream 984774 22601210 ~ 22616958 (+)
G105409 NA non-coding upstream 19520 21591842 ~ 21592052 (+)
G105363 NA non-coding upstream 400586 21210733 ~ 21210986 (+)
G105311 NA non-coding upstream 596088 21013183 ~ 21015484 (+)
G105305 NA non-coding upstream 605718 21003745 ~ 21005854 (+)
G105303 NA non-coding upstream 606934 21000139 ~ 21004638 (+)
G105456 NA non-coding downstream 51416 21667852 ~ 21668149 (+)
G105470 NA non-coding downstream 211388 21827824 ~ 21833705 (+)
G105479 NA non-coding downstream 281540 21897976 ~ 21900325 (+)
G105484 NA non-coding downstream 301552 21917988 ~ 21920210 (+)
LOC103035373 NA non-coding downstream 336356 21952792 ~ 21960494 (+)
G105357 NA other upstream 242368 21327192 ~ 21369204 (+)
G105276 NA other upstream 556089 20989273 ~ 21055483 (+)
G105312 abcb6,abcb6a,LOC107556273,LOC107750068 other upstream 582582 21019038 ~ 21028990 (+)
nfkbiz nfkbiz other upstream 1866648 19734226 ~ 19744924 (+)
G104656 pcdh8 other upstream 2688369 18919060 ~ 18923203 (+)
LOC103046939 LOC107701771,LOC107725347,LOC107565259 other downstream 638649 22255085 ~ 22283453 (+)
LOC103045705 LOC107725350,LOC107692700,LOC108439093,LOC107565240,LOC108441473 other downstream 908821 22525257 ~ 22588961 (+)
LOC103038624 zgc:77849,LOC103038624,LOC108439082,LOC107722949,LOC107692663,LOC107590708,LOC107564565 other downstream 1193643 22810079 ~ 22820096 (+)
G106017 si:ch73-12o23.1,LOC108439175,LOC108258846,LOC107722961,LOC107590719 other downstream 2299199 23915635 ~ 23923771 (+)
G106036 NA other downstream 2370771 23987207 ~ 23989592 (+)

Expression


Co-expression Network