gtf3c3 (gtf3c3,LOC107750061)


Basic Information

Item Value
gene id gtf3c3
gene name gtf3c3,LOC107750061
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 20804054 ~ 20827275 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007237402.3
GATTTGACGGAGTATCTACGGAGTCACAATGCTGCGAAGCATGTCTGTTTAAAGCAGcgataataataacataaatctatctgtttatttagatattaatttaataatgtcgGAGTCCAGCCCTGAACTGAACGATTACCTGGAGGGGAAGATCTCCTTCGAGGAGTTTGAGAGacggagagaagaaagaaaagcgAAGATAAAGGAGGAAGCAGATGATGGCTCGGATGAGAATGAGGCTGTTGAGCAGGATGATGCCATTCCGAGCACTTCCAAACAGATCCCCAGAGTAGCTTGGAAACATCAGACAGGCAGCACAGAGGAGGGAGTAAGCCTGTCTGTTCAAAAGGCCTTTGCCTCCATGCTTGGGGAGGGTctggaggagatggaggatgaAGGCATGGACGAGGGTGAGGACGACGGGGAGTGGAGAGATATTGGTGAGGACGATGGTGAGGACTATGATGGTGGCGACGGCGGCAGTGAAGTCACGCCGGGGGATGTGTTTGCCCTGGAGATGGAGCTCAACCGGGAGAACAAGAAGATGATGAGGgaaAGACGTCCCCGTAGTAAGCTTCCTCGCGCCCTCAGAGGGTTAATGGGAGAGGCCAACATCCGCTACGCCCGAGGAGACAAAGAAGATGCCATCCTGATGTGCATGGAGATCATTCGCCAGGCTCCCCTGGCGTACGAGCCCTTCTCCACCCTGGCGATGATCTACGAGGATCAGGGTGACATGGAGAAGGCACTGCAGTTTGGGCTGATCGCAGCACATCTGAACCCCAGCGACTGCGAGGAGTGGGTCAAGCTGGCCGACATGTCCCTGGAGCAGGACAACATCAAGCAGGCCATCATCTGCTACACTAAAGCAATTAAATATAACCAAAGTAATGTGCGCTATCTGTGGGAGCGCTCCAGTCTCTACGAGCAGGTGGGAGAACACAAGCAGGCCATGGACGGCTACCGCAGAATCCTCAGCCTGCTGCCCCCTACTGATGGAGAGCACTTCATGCAGCTGTCACGTGACATGGCCAAGAGTTACTATGAGAGCAACGAGTTGGCTTCGGCTATTGGTGTGATGGAGGAGGCTCTGGAACGACACCCCGAGCTGGTTAGCCACGAGTGTGTTAACATGGCAGCTGAACTCTACATCGCCAACCACCAGTACGTCAAAGCCTTAGAGGACTTGATCAGGTTTTGTAACATCACACTGGTGAGAGAACCAACCAAGCAGGAGCCCAAGGAACAGACGGCCATGGGAACTGAGGGTGAGGAAGAacaaaaggaggagaagaaagaggaCACAGAAGAAACAAGAGGAGAGGTTTTGGAGGTTGTGGTTCCTGAAGATGTTCCAGTAGACATCAGGGTGAAGCTTATGGTCTGCCTGATCCACCAGCATGTCCTCAAGCCTCTAGATCCCATGCTGACATCTCTGATGGAGCAAAGCCCGGAGGAGATGGGTGACCTGTACCTGGACGTAGCGGAGGCCTTCATGGATGAGGGCGAATACAACTCGGCCCTGCCCCTGCTATCTGCCCTGGTCTGCTCGGAGAGATACAACCTGGCTGTGGTGTGGCTTCGTCACGCAGAGTGTCTGAAGGCCCTGGGGCATTTAGAGGTGGCTGTGAACAGCTACAGTAAGGTGGTGGAGATGGCCCCGCTGCATCTGGAGGCACGTCTGGCTCTGTCCaccctgcagcagcagctgggCAGACCCAACTGCGCCCTGCAGGCGTTGGAGCCCATGTACGATGCCGACACTCTGGCCCAGGACCCCTCAGCTGCgcagcaggagctgaagttgctgctgcacCGCTCCACTCTGCTTCGATGTCAGGGCAGAACAGTGGACTACATAGACGCTCTGCTCACCATGCTCTCCATGCTGCTTAAGGTGGCGATGGTGAGAGCTCAGGTGTGTCTGATAGCCAGCACCTCGTCCGGCACCAGACACCTGCGTCTGATCAAAGTGTCCCGCAACAAGCTGTCTGAAATTGAGGACCAGGAGGCAGCTTACTTAGACGTTACAGGTAAGACCAGCGTACTGTCTCGGGAGGACTGGTGGAGGCTGCTGCTGGAGTGTCTGGAAGCACTGTGTGAAGAGAAGCGCTTCACAGAGGCCGAGCTTCTGGTCGACTCCTCGCTGGAATTCTACTCCTTCTATGACGACCGGGTCAAGCGAAAGGAGCTGGAGTATCTGGGCTTGTCTGCCGCGTTCCTGGATCGCAACTTCCGCAAAGCATATGACTACATAAGGTTGATGCTGATGAACAGCGTGGAGCGGGATCAATTGTGGAACGTCTTCAATCAGGTGACACTGCAGTCGCAGGATGTCAGGCACCACCGCTTCTGCTTGCGTCTCATGCTGAAAAATCCTGAGAATCATGCGCTCTGCCTCCTCAACGGACACACCTCACTGGTGTCTGGAACGTTCAAGCACGCCCTTGGTCAGTATATGCAGGCCTTCAAGAATCAGCCATGTAACCCTCTGCACAGCCTGTGCGTGGGCctcaccttcttccacatggcCTCACAGAAGTTCGTTGTAAAAAGACATCCACTAGTACTGCAGGGATTCTCATTCTTGTGGCGCTATGTGGACCTCCGAGGGCACTGTCAAGAGAGCTTGTACAATGTGGGTCGGGCTCTGCACCAGCTGGGCCTAACTCACCTGGCCATTCACTACTACCAGAAAGCCCTCAGCTTCCCTCCACTCAAACTTGAGGGAACTGATGAAGATCAAGTGGACTTGCGCAGAGAGATCGCCTACAACCTTTCACTCATATGCCATGCTAGCGGCAACAAGGAGATGGCTCGCTACTATATTTACACATACTGCACtgtctgaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtcttttgaaAGGGGTGTTCACGAGAAAATGTGTTTCCATAACTGATTAGACACAAAGCAATgtaatatatctgtaatatacatatgtataaaaTGTCATTTCTACTGATGTTTTTCAATAAAGCAATAAAgctatttattattgttaa
>XM_022674871.1
GATTTGACGGAGTATCTACGGAGTCACAATGCTGCGAAGCATGTCTGTTTAAAGCAGcgataataataacataaatctatctgtttatttagatattaatttaataatgtcgGAGTCCAGCCCTGAACTGAACGATTACCTGGAGGGGAAGATCTCCTTCGAGGAGTTTGAGAGacggagagaagaaagaaaagcgAAGATAAAGGAGGAAGCAGATGATGGCTCGGATGAGAATGAGGCTGTTGAGCAGGATGATGCCATTCCGAGCACTTCCAAACAGATCCCCAGAGTAGCTTGGAAACATCAGACAGGCAGCACAGAGGAGGGAGTAAGCCTGTCTGTTCAAAAGGCCTTTGCCTCCATGCTTGGGGAGGGTctggaggagatggaggatgaAGGCATGGACGAGGGTGAGGACGACGGGGAGTGGAGAGATATTGGTGAGGACGATGGTGAGGACTATGATGGTGGCGACGGCGGCAGTGAAGTCACGCCGGGGGATGTGTTTGCCCTGGAGATGGAGCTCAACCGGGAGAACAAGAAGATGATGAGGgaaAGACGTCCCCGTAGTAAGCTTCCTCGCGCCCTCAGAGGGTTAATGGGAGAGGCCAACATCCGCTACGCCCGAGGAGACAAAGAAGATGCCATCCTGATGTGCATGGAGATCATTCGCCAGGCTCCCCTGGCGTACGAGCCCTTCTCCACCCTGGCGATGATCTACGAGGATCAGGGTGACATGGAGAAGGCACTGCAGTTTGGGCTGATCGCAGCACATCTGAACCCCAGCGACTGCGAGGAGTGGGTCAAGCTGGCCGACATGTCCCTGGAGCAGGACAACATCAAGCAGGCCATCATCTGCTACACTAAAGCAATTAAATATAACCAAAGTAATGTGCGCTATCTGTGGGAGCGCTCCAGTCTCTACGAGCAGGTGGGAGAACACAAGCAGGCCATGGACGGCTACCGCAGAATCCTCAGCCTGCTGCCCCCTACTGATGGAGAGCACTTCATGCAGCTGTCACGTGACATGGCCAAGAGTTACTATGAGAGCAACGAGTTGGCTTCGGCTATTGGTGTGATGGAGGAGGCTCTGGAACGACACCCCGAGCTGGTTAGCCACGAGTGTGTTAACATGGCAGCTGAACTCTACATCGCCAACCACCAGTACGTCAAAGCCTTAGAGGACTTGATCAGGTTTTGTAACATCACACTGGTGAGAGAACCAACCAAGCAGGAGCCCAAGGAACAGACGGCCATGGGAACTGAGGGTGAGGAAGAacaaaaggaggagaagaaagaggaCACAGAAGAAACAAGAGGAGAGGTTTTGGAGGTTGTGGTTCCTGAAGATGTTCCAGTAGACATCAGGGTGAAGCTTATGGTCTGCCTGATCCACCAGCATGTCCTCAAGCCTCTAGATCCCATGCTGACATCTCTGATGGAGCAAAGCCCGGAGGAGATGGGTGACCTGTACCTGGACGTAGCGGAGGCCTTCATGGATGAGGGCGAATACAACTCGGCCCTGCCCCTGCTATCTGCCCTGGTCTGCTCGGAGAGATACAACCTGGCTGTGGTGTGGCTTCGTCACGCAGAGTGTCTGAAGGCCCTGGGGCATTTAGAGGTGGCTGTGAACAGCTACAGTAAGGTGGTGGAGATGGCCCCGCTGCATCTGGAGGCACGTCTGGCTCTGTCCaccctgcagcagcagctgggCAGACCCAACTGCGCCCTGCAGGCGTTGGAGCCCATGTACGATGCCGACACTCTGGCCCAGGACCCCTCAGCTGCgcagcaggagctgaagttgctgctgcacCGCTCCACTCTGCTTCGATGTCAGGGCAGAACAGTGGACTACATAGACGCTCTGCTCACCATGCTCTCCATGCTGCTTAAGGTGGCGATGGTGAGAGCTCAGGTGTGTCTGATAGCCAGCACCTCGTCCGGCACCAGACACCTGCGTCTGATCAAAGTGTCCCGCAACAAGCTGTCTGAAATTGAGGACCAGGAGGCAGCTTACTTAGACGTTACAGGTAAGACCAGCGTACTGTCTCGGGAGGACTGGTGGAGGCTGCTGCTGGAGTGTCTGGAAGCACTGTGTGAAGAGAAGCGCTTCACAGAGGCCGAGCTTCTGGTCGACTCCTCGCTGGAATTCTACTCCTTCTATGACGACCGGGTCAAGCGAAAGGAGCTGGAGTATCTGGGCTTGTCTGCCGCGTTCCTGGATCGCAACTTCCGCAAAGCATATGACTACATAAGGTTGATGCTGATGAACAGCGTGGAGCGGGATCAATTGTGGAACGTCTTCAATCAGGTGACACTGCAGTCGCAGGATGTCAGGCACCACCGCTTCTGCTTGCGTCTCATGCTGAAAAATCCTGAGAATCATGCGCTCTGCCTCCTCAACGGACACACCTCACTGGTGTCTGGAACGTTCAAGCACGCCCTTGGTCAGTATATGCAGGCCTTCAAGAATCAGCCATGTAACCCTCTGCACAGCCTGTGCGTGGGCctcaccttcttccacatggcCTCACAGAAGTTCGTTGTAAAAAGACATCCACTAGTACTGCAGGGATTCTCATTCTTGTGGCGCTATGTGGACCTCCGAGGGCACTGTCAAGAGAGCTTGTACAATGTGGGTCGGGCTCTGCACCAGCTGGGCCTAACTCACCTGGCCATTCACTACTACCAGAAAGCCCTCAGCTTCCCTCCACTCAAACTTGAGGGAACTGATGAAGATCAAGTGGACTTGCGCAGAGAGATCGCCTACAACCTTTCACTCATATGCCATGCTAGCGGCAACAAGGAGATGGCTCGCTACTATATTTACACATACTGCACtgtctgaagtgtgtgtgtgtgtgtgtgtgtgtcttttgaaAGGGGTGTTCACGAGAAAATGTGTTTCCATAACTGATTAGACACAAAGCAATgtaatatatctgtaatatacatatgtataaaaTGTCATTTCTACTGATGTTTTTCAATAAAGCAATAAAgctatttattattgttaa
>XM_022674872.1
GATTTGACGGAGTATCTACGGAGTCACAATGCTGCGAAGCATGTCTGTTTAAAGCAGcgataataataacataaatctatctgtttatttagatattaatttaataatgtcgGAGTCCAGCCCTGAACTGAACGATTACCTGGAGGGGAAGATCTCCTTCGAGGAGTTTGAGAGacggagagaagaaagaaaagcgAAGATAAAGGAAGCAGATGATGGCTCGGATGAGAATGAGGCTGTTGAGCAGGATGATGCCATTCCGAGCACTTCCAAACAGATCCCCAGAGTAGCTTGGAAACATCAGACAGGCAGCACAGAGGAGGGAGTAAGCCTGTCTGTTCAAAAGGCCTTTGCCTCCATGCTTGGGGAGGGTctggaggagatggaggatgaAGGCATGGACGAGGGTGAGGACGACGGGGAGTGGAGAGATATTGGTGAGGACGATGGTGAGGACTATGATGGTGGCGACGGCGGCAGTGAAGTCACGCCGGGGGATGTGTTTGCCCTGGAGATGGAGCTCAACCGGGAGAACAAGAAGATGATGAGGgaaAGACGTCCCCGTAGTAAGCTTCCTCGCGCCCTCAGAGGGTTAATGGGAGAGGCCAACATCCGCTACGCCCGAGGAGACAAAGAAGATGCCATCCTGATGTGCATGGAGATCATTCGCCAGGCTCCCCTGGCGTACGAGCCCTTCTCCACCCTGGCGATGATCTACGAGGATCAGGGTGACATGGAGAAGGCACTGCAGTTTGGGCTGATCGCAGCACATCTGAACCCCAGCGACTGCGAGGAGTGGGTCAAGCTGGCCGACATGTCCCTGGAGCAGGACAACATCAAGCAGGCCATCATCTGCTACACTAAAGCAATTAAATATAACCAAAGTAATGTGCGCTATCTGTGGGAGCGCTCCAGTCTCTACGAGCAGGTGGGAGAACACAAGCAGGCCATGGACGGCTACCGCAGAATCCTCAGCCTGCTGCCCCCTACTGATGGAGAGCACTTCATGCAGCTGTCACGTGACATGGCCAAGAGTTACTATGAGAGCAACGAGTTGGCTTCGGCTATTGGTGTGATGGAGGAGGCTCTGGAACGACACCCCGAGCTGGTTAGCCACGAGTGTGTTAACATGGCAGCTGAACTCTACATCGCCAACCACCAGTACGTCAAAGCCTTAGAGGACTTGATCAGGTTTTGTAACATCACACTGGTGAGAGAACCAACCAAGCAGGAGCCCAAGGAACAGACGGCCATGGGAACTGAGGGTGAGGAAGAacaaaaggaggagaagaaagaggaCACAGAAGAAACAAGAGGAGAGGTTTTGGAGGTTGTGGTTCCTGAAGATGTTCCAGTAGACATCAGGGTGAAGCTTATGGTCTGCCTGATCCACCAGCATGTCCTCAAGCCTCTAGATCCCATGCTGACATCTCTGATGGAGCAAAGCCCGGAGGAGATGGGTGACCTGTACCTGGACGTAGCGGAGGCCTTCATGGATGAGGGCGAATACAACTCGGCCCTGCCCCTGCTATCTGCCCTGGTCTGCTCGGAGAGATACAACCTGGCTGTGGTGTGGCTTCGTCACGCAGAGTGTCTGAAGGCCCTGGGGCATTTAGAGGTGGCTGTGAACAGCTACAGTAAGGTGGTGGAGATGGCCCCGCTGCATCTGGAGGCACGTCTGGCTCTGTCCaccctgcagcagcagctgggCAGACCCAACTGCGCCCTGCAGGCGTTGGAGCCCATGTACGATGCCGACACTCTGGCCCAGGACCCCTCAGCTGCgcagcaggagctgaagttgctgctgcacCGCTCCACTCTGCTTCGATGTCAGGGCAGAACAGTGGACTACATAGACGCTCTGCTCACCATGCTCTCCATGCTGCTTAAGGTGGCGATGGTGAGAGCTCAGGTGTGTCTGATAGCCAGCACCTCGTCCGGCACCAGACACCTGCGTCTGATCAAAGTGTCCCGCAACAAGCTGTCTGAAATTGAGGACCAGGAGGCAGCTTACTTAGACGTTACAGGTAAGACCAGCGTACTGTCTCGGGAGGACTGGTGGAGGCTGCTGCTGGAGTGTCTGGAAGCACTGTGTGAAGAGAAGCGCTTCACAGAGGCCGAGCTTCTGGTCGACTCCTCGCTGGAATTCTACTCCTTCTATGACGACCGGGTCAAGCGAAAGGAGCTGGAGTATCTGGGCTTGTCTGCCGCGTTCCTGGATCGCAACTTCCGCAAAGCATATGACTACATAAGGTTGATGCTGATGAACAGCGTGGAGCGGGATCAATTGTGGAACGTCTTCAATCAGGTGACACTGCAGTCGCAGGATGTCAGGCACCACCGCTTCTGCTTGCGTCTCATGCTGAAAAATCCTGAGAATCATGCGCTCTGCCTCCTCAACGGACACACCTCACTGGTGTCTGGAACGTTCAAGCACGCCCTTGGTCAGTATATGCAGGCCTTCAAGAATCAGCCATGTAACCCTCTGCACAGCCTGTGCGTGGGCctcaccttcttccacatggcCTCACAGAAGTTCGTTGTAAAAAGACATCCACTAGTACTGCAGGGATTCTCATTCTTGTGGCGCTATGTGGACCTCCGAGGGCACTGTCAAGAGAGCTTGTACAATGTGGGTCGGGCTCTGCACCAGCTGGGCCTAACTCACCTGGCCATTCACTACTACCAGAAAGCCCTCAGCTTCCCTCCACTCAAACTTGAGGGAACTGATGAAGATCAAGTGGACTTGCGCAGAGAGATCGCCTACAACCTTTCACTCATATGCCATGCTAGCGGCAACAAGGAGATGGCTCGCTACTATATTTACACATACTGCACtgtctgaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtcttttgaaAGGGGTGTTCACGAGAAAATGTGTTTCCATAACTGATTAGACACAAAGCAATgtaatatatctgtaatatacatatgtataaaaTGTCATTTCTACTGATGTTTTTCAATAAAGCAATAAAgctatttattattgttaa

Function

symbol description
gtf3c3 Predicted to be involved in transcription by RNA polymerase III. Predicted to be part of transcription factor TFIIIC complex. Orthologous to human GTF3C3 (general transcription factor IIIC subunit 3).

NR:

description
PREDICTED: general transcription factor 3C polypeptide 3

GO: NA

KEGG:

id description
K15201 GTP3C3, TFC4; general transcription factor 3C polypeptide 3 (transcription factor C subunit 4)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007237402.3 True 3059 mRNA 0.52 18 20804054 20827275
XM_022674871.1 False 3023 mRNA 0.52 19 20804054 20827275
XM_022674872.1 False 3056 mRNA 0.52 18 20804054 20827275

Neighbor

gene id symbol gene type direction distance location
LOC103029333 LOC108437114,LOC108258365 coding upstream 3523 20783070 ~ 20800531 (+)
LOC103029654 LOC108437114,LOC108258365 coding upstream 29725 20765742 ~ 20774329 (+)
tmem255b tmem255b coding upstream 210724 20566129 ~ 20593330 (+)
cenpe LOC107577987 coding upstream 239469 20532402 ~ 20564585 (+)
grk1 grk1,grk1a,LOC107748333 coding upstream 274036 20519360 ~ 20530018 (+)
LOC103031253 hecw2,LOC107676038,LOC108258347,LOC107674007,LOC107706834 coding downstream 33670 20860945 ~ 20908775 (+)
mdh1b NA coding downstream 117670 20944945 ~ 20957033 (+)
nrp2 nrp2,nrp2a,LOC107556288,LOC107750056,LOC107749808 coding downstream 590161 21417436 ~ 21561654 (+)
LOC103037976 LOC103037976,LOC108437127 coding downstream 784297 21611572 ~ 21616436 (+)
LOC103035679 NA coding downstream 1099074 21926349 ~ 21934395 (+)
G105235 NA non-coding upstream 48522 20755293 ~ 20755532 (+)
G105079 NA non-coding upstream 151793 20649096 ~ 20652261 (+)
G105074 gas6,LOC107571980,LOC107573434 non-coding upstream 183613 20618790 ~ 20620441 (+)
G105041 NA non-coding upstream 379479 20348319 ~ 20424575 (+)
G105271 NA non-coding downstream 1093 20828368 ~ 20860880 (+)
G105270 NA non-coding downstream 44516 20871791 ~ 20909285 (+)
G105275 NA non-coding downstream 70926 20898201 ~ 20899309 (+)
G105300 cnppd1,LOC107549439,LOC107676054,LOC107750058 non-coding downstream 168484 20995759 ~ 20999373 (+)
G105303 NA non-coding downstream 172864 21000139 ~ 21004638 (+)
nfkbiz nfkbiz other upstream 1059130 19734226 ~ 19744924 (+)
G104656 pcdh8 other upstream 1880851 18919060 ~ 18923203 (+)
LOC111193547 NA other upstream 3384916 17406595 ~ 17419138 (+)
LOC103031769 prps2 other upstream 3665081 17119847 ~ 17138973 (+)
LOC103035065 nhlh2,LOC103035065,LOC108434665,LOC108258389,LOC107739819,LOC105019883 other upstream 3909462 16888386 ~ 16894592 (+)
G105276 NA other downstream 161998 20989273 ~ 21055483 (+)
G105312 abcb6,abcb6a,LOC107556273,LOC107750068 other downstream 191763 21019038 ~ 21028990 (+)
G105357 NA other downstream 499917 21327192 ~ 21369204 (+)
LOC103046939 LOC107701771,LOC107725347,LOC107565259 other downstream 1427810 22255085 ~ 22283453 (+)
LOC103045705 LOC107725350,LOC107692700,LOC108439093,LOC107565240,LOC108441473 other downstream 1697982 22525257 ~ 22588961 (+)

Expression


Co-expression Network