LOC103029333 (LOC108437114,LOC108258365)


Basic Information

Item Value
gene id LOC103029333
gene name LOC108437114,LOC108258365
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 20783070 ~ 20800531 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007237403.3
TAACGGACTGAATGACTGTTAGTTGGGAATCTGCTGGTTGGGAATCTGCCAGATCTGCCAATCTGGGACTCTGAGATTAGGTGACTTCTGTTTTAAACTGGATGCTTGACCAATAGTAAAGTTATGCTCCTTGGACATGCAGCACTTAAAGAAAGATGAAACTGGGACTAGTTCATCACTCCAACAAACAAAAAGTCAGGATCTGTACATGCTAGCTAAACCGGCCTCCTCTTCCATGTGATGGAGGGGAACGCGGGGTCGATTTGTGTGCTGGTGACGGGGGGCACCGGTCTGGTGGGCAAAGCTATAGAGCGAGTGGTGAAGGAGGAAGGAGGTGCAAAAGAAGGTGAAGAATGGATCTTTCTATCCTCTAAAGATGCTGACCTAACAAATGCAGCTGAAACGAAGGCCATCTTCGAGAAACATCGACCAACACACGTCATTCATCTCGCCGCCATGGTGGGAGGCCTCTTCCGACACTTAAGACAGAACCTGGATTTCTGGAGAAAGAACATGGCAATTAATGACAACGTGCTGCACACAGCTCATGAGTACGATGTGGTGAAAGTGGTCTCCTGTCTCTCAACATGCATCTTCCCAGACAAAACCACCTACCCTATTGACGAGACTATGATCCATAATGGTCCTCCTCATGAGTCCAACGCCGGCTATGCATACGCCAAGAGGATGGTCGACGTCCACAACAGGGCCTATTTTCAACAGAGTGGACGACGGTACACAGCTATTATCCCCACAAACATCTTTGGTCCCCACGACAACTTCAACTTAGAGGATGGTCATGTTCTACCTGCACTGATCCACAAGACCTACCTAGCAAAGAgggACGGCACGGCTCTGGAGGTGTTCGGCTCTGGCTGTGCACTTCGGCAGTTCATCTACTCTCTGGATCTGGCTCGTCTCTGTCTGTGGGTGTTGAGAGAATACGACGAGGTGGAGCCCATAATATTATCAGTTGGAGAGGAAGATGAGATTTCAATCAAAGATGCAGTTGATGCCATAATTGAAGCTTTTGAGTTCACAGGGCCGGTGAACTATGACAAAAGCAAATCTGATGGTCAGATGAAGAAGACCGCCAGCAATGCCAAACTCCGCCAGTACCGTCCAGACTTCACCTTTACTCCTTTCCAAAAAGcTCTCAAGGAGACGTGTGACTGGTTTGCTGCCAATTATGACAGCACCCGGAAATAAATATTCTGCCACCTGCTGGGGATAACAGTCAAACACTGACTGAAACACAGAACTGACttcatttgcctttgtttttggGATACTGTCCCTTTAAGGGTGTACTCAAACTGATCAATTTTGTTGTGCGTGGAGAACACcataaatctgatctgatctgattggctgccttaAGAAAACAATCCTAATACAGTAATGGCCAAAATCAACGAAACCCCTGCATATCTTTTAGAAAATGCACCAGTTCAAACCAGAACATCAAACCCATTTCCTTCCTACCAGCCACATACCCAGCTTACAAATTTTGATTAGTAGTTTCCTAAACATGACAGttaatgtttttagaatgtttaaTCTATCAAGTTTTCAggatgttttttaaacattttattcaacattttttttacattctggtAACATCACTGCAACTTCACTAGTgtcaatgtttttatgtttagtttTGGAATTATTGATTTTAACTTTTCCCTAATGGGAATGTTATATGAGAACCTTGTGATAAAAATCATTTCTATGTCACACTTTTTCAGAATGTTCcaggaacattatttctgtaaggttacaggctaaccttctgTTAGGTATCAACACCTTTAGCAACTACACGGAAATGGCTTCTCCTGACAATCACcttgcaaatataaaaaaaatactgtataatccaTTTTCAAACACCCTAACAATACCAATTAGTTGTTTTAAACTATGAAAGATGACATATTAGCACCCAAACACACTAGCAGTGCTGAGATATAAAGAtgatatctatatatatattaaagtgcTGTATATTTTTGAATAAACACTGGATTTTTCAGTTCAA

Function

NR:

description
PREDICTED: GDP-L-fucose synthase-like isoform X3

GO: NA

KEGG:

id description
K02377 TSTA3, fcl; GDP-L-fucose synthase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007237403.3 True 2047 mRNA 0.42 10 20783070 20800531

Neighbor

gene id symbol gene type direction distance location
LOC103029654 LOC108437114,LOC108258365 coding upstream 8741 20765742 ~ 20774329 (+)
tmem255b tmem255b coding upstream 189740 20566129 ~ 20593330 (+)
cenpe LOC107577987 coding upstream 218485 20532402 ~ 20564585 (+)
grk1 grk1,grk1a,LOC107748333 coding upstream 253052 20519360 ~ 20530018 (+)
tfdp1 tfdp1 coding upstream 269930 20494467 ~ 20513140 (+)
gtf3c3 gtf3c3,LOC107750061 coding downstream 3523 20804054 ~ 20827275 (+)
LOC103031253 hecw2,LOC107676038,LOC108258347,LOC107674007,LOC107706834 coding downstream 60414 20860945 ~ 20908775 (+)
mdh1b NA coding downstream 144414 20944945 ~ 20957033 (+)
nrp2 nrp2,nrp2a,LOC107556288,LOC107750056,LOC107749808 coding downstream 616905 21417436 ~ 21561654 (+)
LOC103037976 LOC103037976,LOC108437127 coding downstream 811041 21611572 ~ 21616436 (+)
G105235 NA non-coding upstream 27538 20755293 ~ 20755532 (+)
G105079 NA non-coding upstream 130809 20649096 ~ 20652261 (+)
G105074 gas6,LOC107571980,LOC107573434 non-coding upstream 162629 20618790 ~ 20620441 (+)
G105041 NA non-coding upstream 358495 20348319 ~ 20424575 (+)
G105271 NA non-coding downstream 27837 20828368 ~ 20860880 (+)
G105270 NA non-coding downstream 71260 20871791 ~ 20909285 (+)
G105275 NA non-coding downstream 97670 20898201 ~ 20899309 (+)
G105300 cnppd1,LOC107549439,LOC107676054,LOC107750058 non-coding downstream 195228 20995759 ~ 20999373 (+)
G105303 NA non-coding downstream 199608 21000139 ~ 21004638 (+)
nfkbiz nfkbiz other upstream 1038146 19734226 ~ 19744924 (+)
G104656 pcdh8 other upstream 1859867 18919060 ~ 18923203 (+)
LOC111193547 NA other upstream 3363932 17406595 ~ 17419138 (+)
LOC103031769 prps2 other upstream 3644097 17119847 ~ 17138973 (+)
LOC103035065 nhlh2,LOC103035065,LOC108434665,LOC108258389,LOC107739819,LOC105019883 other upstream 3888478 16888386 ~ 16894592 (+)
G105276 NA other downstream 188742 20989273 ~ 21055483 (+)
G105312 abcb6,abcb6a,LOC107556273,LOC107750068 other downstream 218507 21019038 ~ 21028990 (+)
G105357 NA other downstream 526661 21327192 ~ 21369204 (+)
LOC103046939 LOC107701771,LOC107725347,LOC107565259 other downstream 1454554 22255085 ~ 22283453 (+)
LOC103045705 LOC107725350,LOC107692700,LOC108439093,LOC107565240,LOC108441473 other downstream 1724726 22525257 ~ 22588961 (+)

Expression


Co-expression Network