LOC103029654 (LOC108437114,LOC108258365)


Basic Information

Item Value
gene id LOC103029654
gene name LOC108437114,LOC108258365
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 20765742 ~ 20774329 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007237404.3
CTGCGAAAGAAAACTGTCACAGtaatgtctatttgtgtctgAGAGGGAGGATATGTGACTTCATGGAATCCTAGACCCTACATCTCCAGAGATCACTGCTGCATCGagATGGAGGGGAGCTCCAGGCCAATGCGTGTTCTGGTAACGGGCGGCAGCGGTCTGGTTGGCAAAGCCATAGAGCGAGTGGTGAAGGAGGAAGGAGGAgcaaaagaaggagaagaatGGATTTTCCTCTCATCCAAAGATGCTGACCTTACAAATACAGCTGAAACAAAGGCCATCTTCGAGAAACATCAACCGACACACGTCATTCATCTCGCTGCCATGGTGGGAGGCCTCTTCCGACACTTGAGACAGAACCTGGATTTCTTGAGAAAAAACCTAGCCATTAACGACAACGTGCTGCACACAGCTCATGAGTTTGATGTGGTGAAAGTTGTCTCCTGTCTCTCAACATGCATCTTCCCAGACAAAACCACCTACCCTATTGACGAGACTATGATCCATAATGGTCCTCCTCATGAGTCTAACGCTGGCTATGCCTACGCCAAGCGGATGGTTGACGTCCACAACAGAGCCTGTTTTCAGCAGTATGGACGGCGGTACACAGCTATTATCCCGACTAACATCTTTGGTCCTAACGACAACTACAACATAGAGGATGCTCATGTTCTACCAGCACTGATCCATAAGACCTACCTAGCAAAGAGGGACGGCACGGCTCTGGAGGTTTGGGGCTCTGGTTGTGCACTTCGGCAGTTCATCTACTCTCTGGATCTGGCTCGTCTCTGTCTGTGGGTGTTGAGAGAATATGACGAGGTGGAGCCAATAATATTGTCAGTCGGAGAGGACGATGAGCTCACCATCAAGGATGTTGTAGATTCAATAACTGAAGCCTTAGAATTCACAGGACCTGTGATTTATGACACAAGCAAATCAGACGGTCAGTTGAAGAAAACTGCCTGCAATGCCAAACTCCGCCACTACCGACCAGACTTCACCTTCACTCCTTTTTACACAGCTATCAAGGAGACGTGTGATTGGTTTGCTTCCAATTATGACAGCGCTCGGAAATGAGAATTCTGCCACCTGCTGGGGATGAGAGTCAAACATAGACTCTTCATTTTCTCACTGAGAAAGTGATAAAGCAGTCTGTGACAGTGTGAATCATTATTATCATAGACAGAGTGTAGTAAGTGACACTttataatgtgtatttattcagtatttcatgaaataaacattttaagcaaACTGAA

Function

NR:

description
PREDICTED: GDP-L-fucose synthase-like isoform X3

GO: NA

KEGG:

id description
K02377 TSTA3, fcl; GDP-L-fucose synthase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007237404.3 True 1259 mRNA 0.46 10 20765742 20774329

Neighbor

gene id symbol gene type direction distance location
tmem255b tmem255b coding upstream 172412 20566129 ~ 20593330 (+)
cenpe LOC107577987 coding upstream 201157 20532402 ~ 20564585 (+)
grk1 grk1,grk1a,LOC107748333 coding upstream 235724 20519360 ~ 20530018 (+)
tfdp1 tfdp1 coding upstream 252602 20494467 ~ 20513140 (+)
tmco3 tmco3 coding upstream 277452 20463644 ~ 20488290 (+)
LOC103029333 LOC108437114,LOC108258365 coding downstream 8741 20783070 ~ 20800531 (+)
gtf3c3 gtf3c3,LOC107750061 coding downstream 29725 20804054 ~ 20827275 (+)
LOC103031253 hecw2,LOC107676038,LOC108258347,LOC107674007,LOC107706834 coding downstream 86616 20860945 ~ 20908775 (+)
mdh1b NA coding downstream 170616 20944945 ~ 20957033 (+)
nrp2 nrp2,nrp2a,LOC107556288,LOC107750056,LOC107749808 coding downstream 643107 21417436 ~ 21561654 (+)
G105235 NA non-coding upstream 10210 20755293 ~ 20755532 (+)
G105079 NA non-coding upstream 113481 20649096 ~ 20652261 (+)
G105074 gas6,LOC107571980,LOC107573434 non-coding upstream 145301 20618790 ~ 20620441 (+)
G105041 NA non-coding upstream 341167 20348319 ~ 20424575 (+)
G105044 NA non-coding upstream 368470 20394308 ~ 20397272 (+)
G105271 NA non-coding downstream 54039 20828368 ~ 20860880 (+)
G105270 NA non-coding downstream 97462 20871791 ~ 20909285 (+)
G105275 NA non-coding downstream 123872 20898201 ~ 20899309 (+)
G105300 cnppd1,LOC107549439,LOC107676054,LOC107750058 non-coding downstream 221430 20995759 ~ 20999373 (+)
G105303 NA non-coding downstream 225810 21000139 ~ 21004638 (+)
nfkbiz nfkbiz other upstream 1020818 19734226 ~ 19744924 (+)
G104656 pcdh8 other upstream 1842539 18919060 ~ 18923203 (+)
LOC111193547 NA other upstream 3346604 17406595 ~ 17419138 (+)
LOC103031769 prps2 other upstream 3626769 17119847 ~ 17138973 (+)
LOC103035065 nhlh2,LOC103035065,LOC108434665,LOC108258389,LOC107739819,LOC105019883 other upstream 3871150 16888386 ~ 16894592 (+)
G105276 NA other downstream 214944 20989273 ~ 21055483 (+)
G105312 abcb6,abcb6a,LOC107556273,LOC107750068 other downstream 244709 21019038 ~ 21028990 (+)
G105357 NA other downstream 552863 21327192 ~ 21369204 (+)
LOC103046939 LOC107701771,LOC107725347,LOC107565259 other downstream 1480756 22255085 ~ 22283453 (+)
LOC103045705 LOC107725350,LOC107692700,LOC108439093,LOC107565240,LOC108441473 other downstream 1750928 22525257 ~ 22588961 (+)

Expression


Co-expression Network