adamts5 (adamts5,LOC107751075,LOC107698897)


Basic Information

Item Value
gene id adamts5
gene name adamts5,LOC107751075,LOC107698897
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 31261280 ~ 31300421 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007237759.3
aagagagagagcgcgcgcgcACCGTCGTCGTCATCATGCTGCCCGGGATTATTgtggtgttgttgttgttttttctcctCGCTCCACGTGTGTCGCGCGCTCCCTCCCGCCGCTGCCCCTCCTGCCGCCGCTGCCCCCAGCTCGCGCCCCTCCGCACCTGCCGCCCCTCGCGCCTCTGCTACCGGGCTCGTGCGCTCCGTGGACCGGCTGTATCGCGGGGGCGGGCGCGCGGGCTTCCTCCTGGACATGGACGGCCGTCGCTTCCAGCTCGACCTGGAGAGGGACGAGAGCGCGCCGCCGGCACTGGAGCGCGCGCTCGGGCTGGGGCGCGCGCGTGTGAGGTCCCGGTGCGCCTACCGTGGCACGGTGGACTCCAACCCCGAGTCGCTGGCGGCGTTCGAGCTGTGCGGCGGGCGCCTGCGCGGATTCTTCGCGGTGGACGGCGCGCGCTACGTGGTACGTGCGCTCCCGCGCTCTTCCGTCTACTTCTACAGGCGCGAGGGATTCAGCTTCGAGGCGGCGCGCGGGGCGGACGCGCACGACGGCTGCGGAACGCGCGACCCCGACGTCATCAACGCCAACGACGCGGAGCAGCAGTCGGTGGTGCACGTGAGAACGGAAGGGAAGCGGCTGAGGAGACGCGGCAGGTCGGTGTCGCGCGCCCGGCACGTGGAGCTTCTGCTGGTGGCGGACGAGAGCATGGCGAGGAAGTACGGCACCGAGCTGCGGCACTACCTGCTCACGCTGGCGTCCATCGCCTCGCGCCTCTACGGCCACGCGAGCATCGAGAACCCCGTGCGCCTGTCGGTAGTAAAGCTGACGGTGCTCTCGGAGAAGGAGAAGGGCCTGGAGGTTTCGCGCAACGCCGCCGCCACGCTCAAGAGCTTCTGCAAGTGGCAGAACCAGCAGAACCCGCTGGATGACGACCACGAGCATCACCACGACGCGGCCATCCTCTTCACCAGGCAGgacCTGTGTGGGCATCACTCGTGTGATACGCTGGGCATGGCTGACGTGGGCACCGTGTGTTCTCCAGAGAGGAGCTGCGCTGTCATCGAGGACGACGGGCTGCACGCCGCCTTCACCGTCGCCCATGAGATCGGGCACCTTCTCGGCCTGTCCCATGATGACTCTAAGTTCTGTGAGGAGAGGTTCGGCTCCACAGAGGACAAGAGGCTAATGTCGTCCATCCTGACCTCCATCGATGCCTCTAAGCCCTGGAGCCGCTGCACCTCGGCCACCATCACCGACTTCTTTGATGATGGAAACGCGGAGTGTCTGCTGGATACGCCCCGCCAGCCTATCCTGGGTCCTGAGGAGCTCCCAGGCCAGAGCTACGATGCGGTGCGGCAGTGCCGGCTGGCGTTCGGGCCCGAGTACACGGTGTGCCCGGGCATGGACGTGTGTGCACGGCTGTGGTGCGCGGTGATCAGGAAGGGCCAGATGGTCTGTCTGACCAAGAAGCTGCCGGCCGTGGAGGGAACGCCATGCGGCAAGGGCAGGATATGCCTGCAGGGGAAATGTGTGGACAAGACACGCAAAAGACACTATTCGGCCTCTAACCACGGTAGCTGGAGCTCCTGGGGGCCGTGGGGGGCGTGCTCTCGGACATGTGGAGGCGGAGTACAGTTTGCCCATCGTCTGTGCAACAACCCTCCACCTCGCAACAACGGACGCTACTGTACAGGAAAGAGAGCCATCTACAGGTCCTGCAGCGTCACGCCATGTCCTGCACAAAGCAAGAGTTTTAGGCAGGAGCAGTGTGAGGTGAAGAACGGACCTCAGACTGACCCTAAGGGAGTGAAGACGTTTGTGGAGTGGGTGCCCAAGTATGCTGGTATTCTGCCAAAGGACATGTGCAAACTGACCTGCAGGGCCAAGGGCACCGGCTACTATGTAGTGTTCTCTCAGAGGgtgataGATGGAACTGACTGTAGGCCCCACAGCAGCTCAGTGTGTGTGAAAGGGAAGTGTGTGCGCACCGGCTGTGATGGAATCATCGGCTCCAAGCTGCAATATGACAAATGCGGCATCTGTGGAGGCGACAGCACCAGCTGTATAAAAGTGGCGGGTAACTTCACCAAGAGGAGTAAGGGCTACACTGATGTGGTGAAGATCCCAGAGGGCTCGACTCACATCAAAATCCGGCAGTACAAACCCAAAGGCCAGACTCGCTTCACAGCTTACCTAGCCCTCCGCCGACCTGGAGGAGAGTACCTTCTCAACGGCAAGTTCATGATCTCCACCTCCGAGACCGTCATTCCCCTCAACGGTACCATGTTTAACTACAGCGGCTGGAGCCAGCATGACGAGGCTCTCCACAGCATGGGGCCCGGAGCTCTCCGGGAGAGTCTGGTGGTGCAGATACTAGCGACCGACGGCAAGAAGCCGCTCGACATCCGCTACAGCTTCTTCATGCCACGCAAGACGCCGCTGCCTCCTCGGACCACCTGGATGATTTCTGCCACGGCTGCGGCTTTGTCTTCGGGCGAGACGATCACCATGACCACGGAGGCGCCCTCCACGACCAAGCCTCCAACAACGACCCCACCTGGGCCTCGGTGGGTGACGGGCTCATGGATGACTTGCTCCAGGACTTGTGACACTGGCTGGCAGAGTCGTACAGTTCAGTGCAAGGACCCGCTGGGTAAGTTAAGTAAGGCGTGTCCTCTGGGAGACAGACCTTCGGCCTTCAAACACTGCCTGATTAAAAAGTGCTGAAGAGCCTATACGGGAGAGGACTTGCTCTTACGGGAAAGCTTGCTCTGCTCTTATGGAtgtgcttcttcttcttccgtGTCCGCAGTGGAAAGTCTCGAGAGGAGACGGACAAACAGGAGCATAGACACGTACAATCTTACGGAGCAGAACCGCGCAAGGTTCTTTTACACTTGCAGTCGTTCGTAATTGTTCTGATGCTGTTTCATGCCCTAAAATGTcactgtggaaattgtggaacGTGACTGAATCGGCTCGCATTCCGACGTTGACCATGAATTAGACGAGAAGCGCCAGCCCTGGCCTCCAGTACAACATAGGGACTTCATCTGCAGCCTGGATTCACTGACAACTCAATAACAATATGTAGCCACTCTTCTCCTGACCATCAGATATCTTATTCAGCCACTCCTCCTTTGGGGGGTCAGTGTATTTTAGTGTGTATCCATCACGAAATCAAGTTTGAACTGGAACCCAGCAAAGAAACCCAACAGAAATGTAATTCTGGGTTAAAGTAGAGGACTGCAAGTACATAGAGTCTGAGCTATTCCTGCACAATGGGACTGTAGTATGACTACTCTGGTTTTGGAGGTTGACCATGCATTACAATGATGCAGATTATCTACAAATGGAAGCTTCCATGCCCATTGGAGTGTATCAATACCTGATACTGTTGTCCTGTGTTTATGTCCAGCACATTCTCAAAATGGCTTGAGGAACTTTCCTTCATCACTGAAAGACCACAATCTGTTGAcgttagggatgcaccaaaatcaCATTTATGGCTGAaactggacaaaaataaataatttttagaaTGCTAAACACTAAACATGCTATTGCTGGTTTTATAATATCTACCatttcattgaaaaaaaaaa

Function

symbol description
adamts5 Is expressed in several structures, including digestive system; eye; heart; pleuroperitoneal region; and thymus.

NR:

description
PREDICTED: A disintegrin and metalloproteinase with thrombospondin motifs 5

GO: NA

KEGG:

id description
K08620 ADAMTS5; a disintegrin and metalloproteinase with thrombospondin motifs 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007237759.3 True 3599 mRNA 0.58 8 31261280 31300421

Neighbor

gene id symbol gene type direction distance location
gart gart coding upstream 550028 30672152 ~ 30711252 (+)
LOC111193577 LOC108429857,LOC108258902 coding upstream 592536 30661999 ~ 30668744 (+)
LOC111193471 NA coding upstream 713919 30540261 ~ 30547361 (+)
ncam2 ncam2,LOC107721821,LOC107698913,LOC107751079 coding upstream 809679 29844100 ~ 30451601 (+)
LOC111193470 NA coding upstream 1602858 29656537 ~ 29658422 (+)
adamts1 adamts1,LOC107698918,LOC107751074 coding downstream 12319 31312740 ~ 31319149 (+)
cyyr1 cyyr1,LOC107751099 coding downstream 25273 31325694 ~ 31341351 (+)
app app,appa,LOC108258852,LOC107593741,LOC107698920 coding downstream 46880 31347301 ~ 31402273 (+)
G107463 NA non-coding upstream 59056 31201997 ~ 31202224 (+)
G107454 NA non-coding upstream 82937 31178086 ~ 31178343 (+)
G107450 NA non-coding upstream 97773 31162526 ~ 31163507 (+)
G107448 NA non-coding upstream 107581 31153480 ~ 31153699 (+)
G107446 NA non-coding upstream 109706 31150998 ~ 31151574 (+)
G107117 NA other upstream 1480353 29780326 ~ 29780927 (+)
LOC111193573 NA other upstream 2101600 29149065 ~ 29159680 (+)
LOC103027743 NA other upstream 2537254 28703067 ~ 28724026 (+)
G106673 NA other upstream 3194297 28066352 ~ 28066983 (+)
G106661 lancl1 other upstream 3239233 28014516 ~ 28022047 (+)

Expression


Co-expression Network