LOC103028503


Basic Information

Item Value
gene id LOC103028503
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 216013 ~ 223221 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007237869.2
cactcacacacacactcacacacacacacactctctctgtggGTCAGATGGTCAGATGGCGGCTCTGTTGGTCCTGGTGGTTCTTCTGCTCTCCGTCTCGGGTCCAGTGTGTGCCGGGTCGGTCCGGGTGGGCCGCAGTGTTCTGGAGCTGAGTGGGGTGATTAAGTGCAGCACCGGGAGATACGCCCTCGCCTACAGTCTGTACGGCTGTTACTGCGGCCTGGGTGGACAGGGCTGGCCCAGAGACAACGCAGACTGgtgttgTCACAGGCATGACTGCTGCTATGCGACGGCGCAGGACTCCGGCTGCCACACCAAACCAGCACAATACAGATGGAGCTGCAGCACAGACTTACCCGACTgcgGTTCGTTGACGGACAGCTGTGAGAAGacggtgtgtttgtgtgatgcAGAAGCTGCGAGGTGTTTGAAGAAAGCGGCGTATAACCTGGAGTACGCTGTATATCCCGACTTCCTCTGTGGAGCAGAGTACCCCACCTGTGCTTACAACTAACTTACACTACACAATAACTTTATTTCTTACAGTAAAATCTccttttttatagaaaaaataattaatattcagTACAATGTTCCTTTTTTCATAGTAACACctgaaaaaaaagctgtaaaatttgctttattaaagtaaaatctaaaaaaaaatgtatgtaaatctcTATTATCTAACAGTTTTTTACAATGAAATGTAAAACCTAGTAATTAAACCCTCTGTTTTTACAGTAAAGcttaaaaatgtacagtacattttttctttctagAAGTAAAACTTGAAAAACGTACAGAATAACCTCAAAAACATGCAGAAAACCTTCCTTTCTTGTTGCTTTCTTATAAAACACTTACTTAAtgttcttttaataaaataaaaaaatatatgttaaaacattacttttattttattttacttttaaatcctacctttaaaatctaaaaaaaaaaatgtttttactgtacataactttattttttttattaaacacagtaaaaaactACGTTTGGattcaaatcagaaaaaaagttaaattactttattacagtaataaaaaataattctagtaaaaaatactgtaaaacttATTTTAGAAGTAGAATCTGAAACACTAGAACATTGGATTTGATGTTTCTCAACCTTTATAACCCAAAAGTTAAAATCTGTGCTATAAATAATATTCTAAGGGAAGAACATAAACAGAAATGTGTGTTTATGCTCTCCAGATATGTTTtagtactgaaaataaaaaagtgaatcaaaaccaaa
>XM_015602630.2
actcacacacacactcacacacacacacactctctctgtggGTCAGATGGTCAGATGGCGGCTCTGTTGGTCCTGGTGGTTCTTCTGCTCTCCGTGTGTGCCGGGTCGGTCCGGGTGGGCCGCAGTGTTCTGGAGCTGAGTGGGGTGATTAAGTGCAGCACCGGGAGATACGCCCTCGCCTACAGTCTGTACGGCTGTTACTGCGGCCTGGGTGGACAGGGCTGGCCCAGAGACAACGCAGACTGgtgttgTCACAGGCATGACTGCTGCTATGCGACGGCGCAGGACTCCGGCTGCCACACCAAACCAGCACAATACAGATGGAGCTGCAGCACAGACTTACCCGACTgcgGTTCGTTGACGGACAGCTGTGAGAAGacggtgtgtttgtgtgatgcAGAAGCTGCGAGGTGTTTGAAGAAAGCGGCGTATAACCTGGAGTACGCTGTATATCCCGACTTCCTCTGTGGAGCAGAGTACCCCACCTGTGCTTACAACTAACTTACACTACACAATAACTTTATTTCTTACAGTAAAATCTccttttttatagaaaaaataattaatattcagTACAATGTTCCTTTTTTCATAGTAACACctgaaaaaaaagctgtaaaatttgctttattaaagtaaaatctaaaaaaaaatgtatgtaaatctcTATTATCTAACAGTTTTTTACAATGAAATGTAAAACCTAGTAATTAAACCCTCTGTTTTTACAGTAAAGcttaaaaatgtacagtacattttttctttctagAAGTAAAACTTGAAAAACGTACAGAATAACCTCAAAAACATGCAGAAAACCTTCCTTTCTTGTTGCTTTCTTATAAAACACTTACTTAAtgttcttttaataaaataaaaaaatatatgttaaaacattacttttattttattttacttttaaatcctacctttaaaatctaaaaaaaaaaatgtttttactgtacataactttattttttttattaaacacagtaaaaaactACGTTTGGattcaaatcagaaaaaaagttaaattactttattacagtaataaaaaataattctagtaaaaaatactgtaaaacttATTTTAGAAGTAGAATCTGAAACACTAGAACATTGGATTTGATGTTTCTCAACCTTTATAACCCAAAAGTTAAAATCTGTGCTATAAATAATATTCTAAGGGAAGAACATAAACAGAAATGTGTGTTTATGCTCTCCAGATATGTTTtagtactgaaaataaaaaagtgaatcaaaaccaaa

Function

GO:

id name namespace
GO:0006629 lipid metabolic process biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007237869.2 True 1282 mRNA 0.37 4 216013 223221
XM_015602630.2 False 1269 mRNA 0.36 4 216014 223221

Neighbor

gene id symbol gene type direction distance location
LOC111193578 NA coding upstream 27414 187147 ~ 188599 (+)
LOC107197101 NA coding upstream 33364 177680 ~ 182649 (+)
LOC103033028 NA coding upstream 46309 162996 ~ 169704 (+)
LOC103027555 NA coding upstream 90864 98126 ~ 125149 (+)
LOC111193489 NA coding upstream 198169 6084 ~ 17844 (+)
rexo5 NA coding downstream 53432 276653 ~ 293379 (+)
gtf3c1 NA coding downstream 88445 311666 ~ 341737 (+)
LOC107197104 NA coding downstream 231651 454872 ~ 459776 (+)
LOC103026069 NA coding downstream 318724 541945 ~ 548280 (+)
LOC103043293 LOC108413567,LOC107572909 coding downstream 433447 656668 ~ 728123 (+)
G99356 NA non-coding upstream 15440 197666 ~ 200573 (+)
G99345 NA non-coding upstream 121831 92045 ~ 94182 (+)
G99344 NA non-coding upstream 127446 86699 ~ 88567 (+)
G99340 NA non-coding upstream 138991 66706 ~ 77022 (+)
G99367 NA non-coding downstream 9706 232927 ~ 234373 (+)
G99368 NA non-coding downstream 11636 234857 ~ 235793 (+)
G99373 NA non-coding downstream 24719 247940 ~ 249482 (+)
G99352 thumpd1 non-coding downstream 41155 264376 ~ 265137 (+)
G99377 NA non-coding downstream 45220 268441 ~ 271128 (+)
LOC103031902 NA other upstream 178949 20991 ~ 37064 (+)
G99561 NA other downstream 251439 474660 ~ 482219 (+)
LOC103036139 NA other downstream 264253 487474 ~ 496376 (+)
LOC111193579 NA other downstream 310808 534029 ~ 540471 (+)
LOC111193492 NA other downstream 366962 590183 ~ 593200 (+)
ubl5 ubl5 other downstream 885255 1108476 ~ 1110592 (+)

Expression


Co-expression Network