LOC103035907


Basic Information

Item Value
gene id LOC103035907
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 23632379 ~ 23638888 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007238141.3
gcgcacacacagacactctcgCGCGCGGAAGGCACGCTCCTCTTCATTCCTTGCTGGAGAGCGCAGAGCATGCGCATGTTCCCCCGTTCGCCGTCGCCGCCGCTTCCGCGCGCGCTTTCCACGGAGGGTTTGGAGGGCTTGGAGGGCTGCTAGGGGTTGGTGGAGGTAGGGGCAGGAGAATGATGGACAGCAGGGCGCTCGAGCACCCGCCGCACGCCGCGTTCGGGGGCTCGCTGGGCGGCGGCGTGGTCGGCCTGGGCTTCCCctaccatcaccaccaccatcatcatcaccatcagctCGGACACCGACACGTGTATGAGCTGCCCGGCCATGCGCTACCCTCCGCCGCCGCTGCAGCAGCCGCGGCCGCGGCCGCCGCTGCCTCTGTGCCATTCTCCATAGACGGATTACTGAACGGCTCGTGCTCAGTGGGCTCCGGGCCGCTGCTGGGGTCCGCCTGTGGGGATGGACAGCAGTACAAGCTCTCCGaCGCCGGCGACCCGGACAAGGAGAGCCCGGGATGTAAGAGGAGGCGCACCCGCACCAACTTCACGGGCTGGCagctggaggagctggagaagGCGTTCAGCGAGAGCCACTACCCGGACGTCTTCATGCGCGAGGCGCTTGCGCTGCGCCTCGATCTTGTTGAGTCACGTGTGCAGGTGTGGTTCCAGAACCGGAGGGCCAAGTGGCGTAAAAAAGAGAACACCAAGAAAGGACCTGGCCGGCCAGCGCACAACTCCCACCCGACCACGTGCAGCGGAGAGCCAATGGACCCGGAGGAAATCGCGCGGCGGGAGCTGCAGCGCCTGGAGAAAAAGAAGCGCAAGCAGGAGCGGAAGTTGTTACGCTCACAGAACAAGCTTTCCGCTGGGGATCTCTTGCACACGCCCGGCTCGGACAGCGACAGCGGCGTTTCGCAGAGTACCGACAGCGAGGCCGCCCCGCACCCCGGCGCTCCGGCCCCGCGCAGCCCGCAGCACCACCAAAGACCCAGCGCCGCATCGAGCCGGAGCGCGGACGCGGGAGACTCGCCTCGGACATCGGACGGCGACGTCACACGTCCGTCTGCCTTCCACAAGCTCAGCCCGTTCAGCGTGGAGAGCCTGCTGGCCGACTCGAGCCCCCGGCGGAGACACGCGCTGGATTTGCAGCTGCCTCCGACGCCCCAGAGACCCCTGGTGGGCAAGGGCCACTTCTTGCTGTATCCCATCACCCAACCTCTTGGGTTCATAGTGCCACAGACTACAGCCAGAGCAGGCCACGGTGACGCAGGGGACTCTAGCCACCGGTGGCCCACTGATGATGACCAGACCAGCTTTCCTAACTCAGATCCAAATCATGAGAACGGTGGTTCCAGTCCAAACGAATCAAAGCCGGATCAATCCGAGGCTAAATCCCCTCAAACAAAGCTCTCACAGGGAGGCCAGTCGCCTCAAGACCACAAAgacacaagaacacacacttctgacaccaacacacaccaagaCATGGACTGAAACTGACAGGTCATGGAGCATTCCCAAAGCTAAACTAATCACaacattttttctaaaagcagACTGAATTTTGAATTCCGTTTtttaaaacgaaaaaaaaaaatccctaaaaaCGGGATATTCTTCCTTCAGGTGGATTACAgatttttgttcagtttttgaCTCACTGAACGGGCTTAGTGATGTCTGCTAGCCTAACCTAGCCTGACTTTTCCTAAGGGGAAGGAAAAAACAACATGAAATCCTCAAACATTGTACAAACGATGAATATCaaagatatttatatatgtaacgttttcataaataaaaattgtattgtAAAAGAAATGTGTTTTCACACCAAAGATATTCCGGCATTTGTTGGTAACCAAAACTGGTAGCATACAAGAAACAATTCTAGGAACCGTTTTTATAATTCATGAAATCCTCAAACATGCATATTATGTCTACTACTTTATATTCAAAAATCATCTcttgaaaaccatttatttaaatgtttttggacaggaacaaatgtttttttttctaactcacaaagaaccatttttattttttattaaaccagAACCTGCATTTGACTTAAAGGaaacaattaatttaaattaaatttgatgCAAAGG

Function

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0007275 multicellular organism development biological_process
GO:0003677 DNA binding molecular_function

KEGG:

id description
K09328 UNC4; homeobox protein Unc-4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007238141.3 True 2125 mRNA 0.54 3 23632379 23638888

Neighbor

gene id symbol gene type direction distance location
chtf18 chtf18,LOC107725360 coding upstream 79681 23524716 ~ 23552698 (+)
plk1 plk1,LOC107722962 coding upstream 142174 23480456 ~ 23490205 (+)
LOC107197111 NA coding upstream 172864 23454456 ~ 23459515 (+)
LOC103041889 NA coding upstream 193276 23434867 ~ 23439103 (+)
cacng3 cacng3,LOC108439097,LOC108258515 coding upstream 222361 23400271 ~ 23410018 (+)
gpc6 LOC108414264,LOC105911916,LOC107730398,LOC101477426,LOC100710496,LOC107744956 coding downstream 331803 23970691 ~ 24115461 (+)
slitrk6 slitrk6,LOC107674010,LOC107730399,LOC107558904,LOC107737039,LOC107574216,LOC107698122 coding downstream 1438048 25076936 ~ 25102573 (+)
LOC103022503 NA coding downstream 1733918 25372806 ~ 25374832 (+)
LOC103023109 NA coding downstream 1743984 25382872 ~ 25386300 (+)
LOC111193564 NA coding downstream 1780652 25419540 ~ 25422258 (+)
G105940 ubn1 non-coding upstream 46162 23580155 ~ 23586217 (+)
G105906 NA non-coding upstream 135823 23494075 ~ 23496556 (+)
G105891 ndufab1,LOC107590767 non-coding upstream 179153 23445874 ~ 23453226 (+)
G105879 NA non-coding upstream 220335 23411283 ~ 23412044 (+)
G105872 NA non-coding upstream 234517 23390733 ~ 23397862 (+)
G105974 NA non-coding downstream 9542 23648430 ~ 23648659 (+)
G105984 NA non-coding downstream 50258 23689146 ~ 23689374 (+)
G105990 NA non-coding downstream 94533 23733421 ~ 23733782 (+)
G106003 LOC108439158 non-coding downstream 231524 23870412 ~ 23890084 (+)
G106022 NA non-coding downstream 293946 23932834 ~ 23933173 (+)
LOC103038624 zgc:77849,LOC103038624,LOC108439082,LOC107722949,LOC107692663,LOC107590708,LOC107564565 other upstream 812283 22810079 ~ 22820096 (+)
LOC103045705 LOC107725350,LOC107692700,LOC108439093,LOC107565240,LOC108441473 other upstream 1043418 22525257 ~ 22588961 (+)
LOC103046939 LOC107701771,LOC107725347,LOC107565259 other upstream 1348926 22255085 ~ 22283453 (+)
G105357 NA other upstream 2263175 21327192 ~ 21369204 (+)
G105312 abcb6,abcb6a,LOC107556273,LOC107750068 other upstream 2603389 21019038 ~ 21028990 (+)
G106017 si:ch73-12o23.1,LOC108439175,LOC108258846,LOC107722961,LOC107590719 other downstream 276747 23915635 ~ 23923771 (+)
G106036 NA other downstream 348319 23987207 ~ 23989592 (+)
G106146 NA other downstream 772320 24411208 ~ 24413098 (+)
LOC111193563 NA other downstream 1722856 25361744 ~ 25369439 (+)
LOC111193565 NA other downstream 1819927 25458815 ~ 25570821 (+)

Expression


Co-expression Network