XLOC_007388 (nkrf)


Basic Information

Item Value
gene id XLOC_007388
gene name nkrf
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007125.7
NCBI id CM002898.2
chromosome length 52660232
location 32852388 ~ 32858973 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00014561
TTGGGTGctttcccagcatgcactgtGCTAGCTAGTAGCTACGTTGTTTCCGGTTAGCTTCTCGCTACTGTCGACCACCGGGATGCTCAGACCTCATTCACCGGACCAGTTTGTTTCTAGCAAACCCGCTGGTTTTCGCCGCTGGACGTGTAATGTCGATGACTTCCGTCAGCAGTTCGAAAGTGACAAGCATTGGTCTGCTAGACGTCAGTTCATATTGAAACACATTGAGCAGTACGAGCACGAAAATGGGCTTGATAAGCTGCTGGCCCTGTCGATGGTGTGGGTTAACCATGTTTTCCTGGGATGCAGGTATGGCTCTCAACTGATGGACAAGGTGCTTGAGATGGCAGAAGGGATTGATCTTGGCGAAATGCCCTCATATGAACTAGTCCCAAACGCTGAAGCCAAAAAGAGACCGTGTTCATCTGATGGAAGTGAGGAACCCATGAGCAAAATGCCTGTGTCAAAATTCACTTGCAGACCTAGATTTGAGCCTGTACACTTTGTGAGTGGCGAGAGCAGCGGCAGTGGAAATGGAAGAACtgatgaaaaagaaaatgagaagACTAGAAGGAGGGATGAGGTGACTGATGCAAGACAAAAGGAACCAGATCATCAAGCATATAATGGCAACCGTGGCCGCACGCCCCCCTCAAGCTCTCTTGACAAGGGCAGGTATGGGTATGATTCTTGGCCTGAGCACAGAAGCAAGGATGTGCCCTCGGGTGGCACAAGTGGGCTTGGTTATAGCAGCAGTGGGTCCACCTCAAACTTCATGGGCAAAGTGCAGCAGGAGTACACCGCTAAATATGAGGCCCATAATTCCAGGCAGTCTGATTCAGTCTTACAAGCAGGCAGATCTGATGGAAGTGGACGGTCTGGAACCTACGAGAGTGGACGGCGTGGATTGGGATTTGGACATCAAGAAAGGCCAACCTCCAGCAAGGCATTCAGCAGGGCATACGATGGTCCAAGCAGAGGAGGTACAGGCCTGCTCCCTACACCCTCACTGCCAGCTTCTGTCCCCACAGCCGCAGTTGAAGAAAAACAGAGGCTGATAGTCAGAGTAGCATCAGCCGTTGCCGTCACCCTCAGAGATCCGGCATTCGTGGGTGGACCTGAAGGTCCAAACTACAATTTCATACTTAGCCGCAGCATTCAGGCCTGCAAGACGAACCCAGAGTACATCTATGTCAATTTAAGAGATATCCCACCTGCTGACCTTCCTAAAAACAGAAAGGTACCATGTGATGGATATGCGTGTGAACTGAGGTGTCAGAGTGTATACCTTGCTACAGGTTACTCTGGGAGTAAAAACGGTGCTAGAGACCGAGCTTCAGAACAGGCAATCAAGCTGTTCATGAGGCCGGTGGAAATTCGTATCTTGCGGCGAGTCTACAAGCGCAGATATGTTAATGACATGGTGGTGTGCCAGGTTAACACTCCAAACCCATCCCTCCCACCACCTCTACGCAACCCTGAGGACAGTCCACCCCCAAGTACTAAGGGCCAATATGTGCCTGACCGAAGCAAACACTGGACAGAATTCGTAATCATGGAGAACGCACATGATGCCATCTGTATTTTAAACAACTCTGCAGCTTTCAACCGCATGAAGGTAGATTACACTTTTGACCCGGTTCCCAACAGCAATTTATGGCTCTGTAATGTGTACTTGCAGGGCGAACTGGTGGCACAAGCCAGAGGGACCAAGAAAAGTGCAAAACACTCAGCGGCAGAGGAGGCAGTGAAGAAGTTGCGAATGAACCAAGCTGCTCGCCAAcaagagcagcagcagcagcagcagcagcaacaacaacaacaacaacaattttctGGAGGAAACTATTTTTCAGAGGAATCCGCTGGTTGCTACTCTCAGCAAAGCAGCAGTGTGGCACAGCTCGGTGAATTGGTAATCCTTGAAAATTCAGATAATGCTATATGCATAATAAACGACACTGCTCAATTTAATAAGGTGTCGGCAGAATACAAATTCACAGTTCTGGCAGACCACAGCTGGCGATGTGAAGTTTACCTGGATGGTCAGTATGTGGCAACAGGGCTTGGTCCCAAAAAAACAGTCAAGCACATCGCGGCCGAGGAGGCGCTTGCCACGCTTCGGCGTACACAGGCTGTGGTGAAGTCCAATCTTAGGAAGGAGGGCCACGCCGATGCAATTTCCCGAGATCAAATCATGTGTCGTTCTGGTGAGGAAGCCGTTCGGCAGGAGATTAAAGAGGACAACATTGGGAACCAGCTACTCCGTAAGATGGGCTGGACAGGTGGAGGCTTGGGTAGGGAAGGAGACGGCATTGCTGAACCTATCAAAGTCAAAGAGCAGTTCACTCGAGAAGGACTCGGAATGGACATGGACAGACATGGTAGTCAGCTGACAAAGCGTGACATTGAGGACATCATTCGGAATTACGCAAGTTCGGAACGCCAAGACGATCTGCGCTTCTCCACCGAGCTTAACAACGAAGAGCGCCGACAGATTCACCAGGTGTCCCAAAGGTATGGGCTGCGCAGCAAATCGTACGGACAGGGTCGACAACGCTTTTTAGTGGTTAGCCGAAGAGTTCAGAAGgaacagctgattggtcagctctTGCAGGAAGGACAGGTTGGACGATATGAACTGGTGAAACCTCAGCCTTTATAAACTCAGGCTTCTGATAAGCCCACACATAAAAGCaaacagttttatttgttttcaaagagctcaaagtattttttaaaagatgtaaagtGGACAGAAGCCTGAAAAGCCTGTCAATGTCTACAAACATGTACCCTTTTCTCCCGTTACCATTGTGTATTTTCATGTTTTGTCCAAATTTGCTGTAGGTTAGCTCAAGGCCATATGAAGACCGCAAATCTAACTAGCCTGTCAAATCATATATATATCCTGTGGATGATATTTATTGACCTGGATATTAGTAAAGGGGCTTTACGGCAGCATGTGCTCCTGTCTGAAATGACATTCCATTTTCTCCACTTGTTTTCACAATGGACAGTTCTTTCATCTTCTGTAAGAGCAACActtgaaatataaaaacaacactgaATTACTAAA

Function

symbol description
nkrf Predicted to enable nucleic acid binding activity. Predicted to be active in nucleolus and nucleoplasm. Orthologous to human NKRF (NFKB repressing factor).

GO:

id name namespace
GO:0005654 nucleoplasm cellular_component
GO:0005730 nucleolus cellular_component
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030616-73 Predicted to enable nucleic acid binding activity. Predicted to be active in nucleolus and nucleoplasm. Orthologous to human NKRF (NFKB repressing factor).

Ensembl:

ensembl_id ENSDARG00000100536

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00014561 True 3082 mRNA 0.48 3 32852388 32858973
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Neighbor

gene id symbol gene type direction distance location
XLOC_007387 NA coding upstream 1620 32832923 ~ 32850768 (+)
XLOC_007386 crhr2 coding upstream 64342 32783972 ~ 32788046 (+)
XLOC_007385 BX088596.2 coding upstream 97085 32751464 ~ 32755303 (+)
XLOC_007384 f9a coding upstream 414188 32430982 ~ 32438200 (+)
XLOC_007383 NA coding upstream 704187 32068279 ~ 32148201 (+)
XLOC_007389 AL590151.2 coding downstream 28835 32887808 ~ 32907751 (+)
XLOC_007390 lnx2b coding downstream 59199 32918172 ~ 32945931 (+)
XLOC_007391 tex11 coding downstream 190606 33049579 ~ 33068736 (+)
XLOC_007392 pdzd11 coding downstream 405330 33264303 ~ 33268494 (+)
XLOC_007393 sowahd coding downstream 470447 33329420 ~ 33331494 (+)
XLOC_007381 NA non-coding upstream 794436 31904437 ~ 32057952 (+)
XLOC_007394 NA non-coding downstream 476756 33335729 ~ 33339116 (+)
XLOC_007398 BX004980.1 non-coding downstream 619688 33478661 ~ 33481466 (+)
XLOC_007402 AL929104.1 non-coding downstream 785683 33644656 ~ 33644771 (+)
XLOC_007405 NA non-coding downstream 1039996 33898969 ~ 33902269 (+)

Expression

Expression of XLOC_007388(nkrf) in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 150.
End of interactive chart.

Expression of XLOC_007388(nkrf) in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 150.
End of interactive chart.

Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000000_11577295_11582295 NKRF coding CI01000000 null 11576427 ~ 11582337 (+)