LOC103023562


Basic Information

Item Value
gene id LOC103023562
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 961275 ~ 968113 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007238348.3
CCATCTCAGCAGTTCTTTTTCCCTCAACAAGATAAGGCGATGGGTCGTTTGTCGCTTTCTCAGAAGAGTTACTCCAACATTGGCTCAATTGGGTCTGGATCTCTTAGGGTtggaggaggtggtggagggGGTTCTAGGTCCAGCTATGGCTATGGCTACTCTTTGGGCGGAGGGGTGGGTGGTGCACTTGGAAGCCAGGTTAGGTACGGAGTAGGTTCTGCTGTAGGTGGAGGTTTTAGCACTGGTGGTGGCAGGTTTGGGTCAGGAATGgcagttagtagtagtagtagtgttggtggtggtggtggaaggTTTGGGATGGGCTTTGGTtctggtggtggtgttggtagTGGATTTGGTTTTGGTGGTGGCAGGTTTGGAAtggctgctggtggtggtggtggaggaggtggtggtgcTGGTGCCGGTGCTGGTTTCTGGACTGGAGGAAGTTCCATTGCAGATGGTGGCCTTCATCCATTTACCACCAATGAGAAACTAGAGCTTCAGACCCTGAACGATCGATTGGCCACCTACCTGGACAAGGTGAAACGACTGGAGACCGCCAACCATGAGCTGGAGGAGAAGCTACAAGGCTTCAAGTCTAACACAGTGCAGGTCACCTACGACCTGCAGGCTTACCAGACCCAACTACATCCTGTTCGAGACCAACTTACAGGATTTCTGAAGGAATGCTCCCGCCTGGCGCTGATGATTGATAACGGCAAATTGGCAGCTGATGACTTCAGAATCAAGTACGAGAATGAACTTGCAGTGAGGCAGACTGTAGAGGGAGACGTCGCCGCCCTGAAGGCCCTCAGAAGAGAATATGAGCTAAACAGCGCTACCCTGTTGCAGGAATTTCAAATCCTTCTGAAAGACCGTGATACAATCAACACCAACCATCAGAAGGAGGTGCTGAGTCTTCGTGGGCAGGTGGCAGGAACTCTGACTGTGGACGTTCAGCCGGCCGACTCTATGGATCTCTCTCGCCGACTGGCCGACCTTCGCTCTGAGTACGAAACCATCGTAGAGAAGAACCACCAAGAAATCGAGAACTGGTACACTAAGAAGCTGGAAACTAAGCATGTGGAGACGACCCAGGTTGCAGAAGTTACCATGAGTGGAAGCTCTGAGATCGCTACGAGCAGAGACCAGATCCTCACCATACAGACTGAACTGGATGCACTTCTGCTGCAGAAGAGCCAGCAGGAGCAGCGATTGGTGGATGTTCAGGGGCAGAAGCAGATGCAGCTGCTGGCTCTGAGTCGATTGGCTGGGAATCTGGAGGGTGAGCTTGCCTCAGTTCGGGAAAGTACTCTGCAGCAATCCAGAGATTACCAGCTTCTGCTCAGCACCAAAGttcagctggagagagagatttCTACCTACAAATCACTGCTGGAGTTTGCCGGAGATCTCAGCAAGTTCCCTGGAATGAGTTACCGATCGTCGATGTGGGTACAGAGCTCAGCATCTTCAgctgcaccagcagcagcaccagctgcaccagcaccaccagcaccacaagctgcaccagcagcagcatctgAATCCTCagctgcatcagcagaagtGAAGTCAGGTGAATCTGAGGTCCAGTCGGTACCAGATGTGAAAGCAGATGAAAAGAAGCCTACTGAATCTCCTCCTGGCCTGAGTGACATCACTGTACCTGAAGAACCTCTCGACCAATCAGATTAGAGCAGGATCTGATGTCACTGTTTCTCAAATTTAATTGTAAGCTGAACCCGGTTAGCTTTGACTAACCGTgaacacaataaacaataaactgcAGTGAAAACGTA

Function

GO:

id name namespace
GO:0043603 cellular amide metabolic process biological_process
GO:0043292 contractile fiber cellular_component
GO:0044449 obsolete contractile fiber part cellular_component
GO:0036379 myofilament cellular_component
GO:0005861 troponin complex cellular_component
GO:0005865 striated muscle thin filament cellular_component
GO:0015629 actin cytoskeleton cellular_component
GO:0030016 myofibril cellular_component
GO:0030017 sarcomere cellular_component

KEGG:

id description
ko05150 Staphylococcus aureus infection

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007238348.3 True 1808 mRNA 0.52 7 961275 968113

Neighbor

gene id symbol gene type direction distance location
LOC103026766 NA coding upstream 9661 941924 ~ 951614 (+)
LOC103027056 LOC108413120 coding upstream 27074 904230 ~ 934201 (+)
LOC103027665 LOC108413281,LOC108412240 coding upstream 65475 889210 ~ 895800 (+)
LOC103027992 LOC108413169 coding upstream 76740 855966 ~ 884535 (+)
LOC103028300 LOC107686882 coding upstream 113173 830395 ~ 848102 (+)
LOC103046652 NA coding downstream 183498 1151611 ~ 1171823 (+)
LOC111193496 NA coding downstream 250644 1218757 ~ 1228783 (+)
LOC103028492 NA coding downstream 264977 1233090 ~ 1236197 (+)
LOC103027248 LOC103027248 coding downstream 272050 1240163 ~ 1243893 (+)
LOC103027651 NA coding downstream 280454 1248567 ~ 1253895 (+)
G99645 NA non-coding upstream 62961 897347 ~ 898314 (+)
G99642 NA non-coding upstream 64486 896419 ~ 896789 (+)
G99623 NA non-coding upstream 109806 848199 ~ 851469 (+)
LOC103024499 NA non-coding upstream 169175 790106 ~ 792100 (+)
G99604 NA non-coding upstream 329441 631505 ~ 631834 (+)
G99651 NA non-coding downstream 789 968902 ~ 971158 (+)
G99654 NA non-coding downstream 10617 978730 ~ 980663 (+)
G99656 NA non-coding downstream 16788 984901 ~ 986268 (+)
G99657 NA non-coding downstream 21861 989974 ~ 991666 (+)
G99671 NA non-coding downstream 59736 1027849 ~ 1028224 (+)
LOC111193492 NA other upstream 368075 590183 ~ 593200 (+)
LOC111193579 NA other upstream 420804 534029 ~ 540471 (+)
LOC103036139 NA other upstream 464899 487474 ~ 496376 (+)
G99561 NA other upstream 479056 474660 ~ 482219 (+)
LOC103031902 NA other upstream 924211 20991 ~ 37064 (+)
ubl5 ubl5 other downstream 140363 1108476 ~ 1110592 (+)
G99710 NA other downstream 213314 1181427 ~ 1184269 (+)
LOC111193582 NA other downstream 328302 1296415 ~ 1298377 (+)
LOC111193593 NA other downstream 877378 1845491 ~ 1853019 (+)
LOC103047668 NA other downstream 917115 1885228 ~ 1889237 (+)

Expression


Co-expression Network