ube2f (ube2f,LOC107725407,LOC107674019,LOC107556276,LOC107707607,LOC107566887)


Basic Information

Item Value
gene id ube2f
gene name ube2f,LOC107725407,LOC107674019,LOC107556276,LOC107707607,LOC107566887
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 25740227 ~ 25759643 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007239760.3
ctgcggtgtgtgtgtgtgtgtgtacccggTCCGCTGCAGGCCGccgggtgtgtgtgagtgttgggtTAGTAAAGTTAGCGCTGGGTGAATCTCCGCTGATTATCCGGTAAAATAATCCGGATCTGCGGGTTTAATAACCGGTAAATTTAGCGCTGTTATTACGGAACACCGCGGGGATTAGCGGAGCTGCGGGGAGGCCCGGGCATGCTGTAGAGGTCCGGCCGCTGGAGCGCAGCGCTAACCGGCGGCTCGCTAACCGACCGACCCGGTAAACAGCAGCGGAGgtgggTGTGAGAGCACGCATGCGTGGTGGTGAGCTATGCTGACGTTGGCGAGTAAGCTGAAGAGGGAGGAGGGCGTGAGGGCGGGCGGAAGCCCCACCAGCTCCCACGATGCCTCACACCGAGTGTCCATCAGAGACCGGCTGCTCATTAAAGAGGTTGCAGAGCTTGAGGCCAACCTTCCTAACACCTGTAAGGTCACGTTTGTCGATGTCAACAAGCTCCATCACTTTCAGCTCGCCATTACTCCAGATGAAGGATATTACCAGAGTGGAAAGTTCCAGTTTGAGATTGAAGTTCCTGAAGCCTACAACATGGTGCCTCCTAAAGTTAAGTGCTTGACAAGAATTTGGCATCCAAACATCGCAGAGACGGGGGAAATCTGCCTAAGCTTATTGAGAGAGCATTCAATCGATGGCACAGGGTGGGCACCAACACGCACGCTAAAGGATGTGGTTTGGGGGTTGAATTCTTTATTCACTGATCTTCTGAACTTCGATGACCCCCTGAATATAGATGCTGCGGAGCATCATTTACGggacaagGACGATTTCAGGAATAAAGTGCAGGACTTCATTAAGAACTATGCAAGATGATGCCTCGGTCAGCTGCGCTAGCCGCTCACGCACGCCCGCGACTTCGCAGCCGAGCGCCCGCCCGAGCGACCACCCGCGAGCCCTGAGCGCCACAGAGACAAAATCCCGAAACATTTCCAAATGTGAAGAGAGCCAGACACGTCCTGTGGCTTTAATCGACGCTCTCGCGTGAAGGTTTGGGAGCGGGGTTGGTGGGCTCGTCTTTGATCTttgatcttcttcttcttttgtttgtttttttgttcttttctcgCTCAGGGCCGTTTTGCAGAAGCCCCGACAGCTGGTTCTGCTTTATCCAGCTGGCtttgacaaaaaagaaaaaaatgcgtAACGCATTGAAAAATGAATTGATAAAGgaataatgaaaaatgtattcaCAGCAACGATAAGACACACGCTCTCTGATGTCACCTCACGTGCTAGTGCCTCTGTGACCTGACGCTGACTGCTACAGCCTGCAAGCTCCCACCTTCATGTGCTACTGCGTACCTGGTGTCCCTCCAACACCAGCACTTCACACGCGAGGACTGAATGCTCACAATGCTCACGATGATCACAATGCTCGCTTAGCCCGCGCCTGTTCTGCAGGACATGATCATTATTTACTTTTGCTGGAATTTGTCCCGATCGCGAGACTGTTGTACCGATTCCGGAGACGGCGCTTCGACTTCCTCGCACTCCTGTATGCGTTTCTGTTTTCGTCTGTGTGCGTAAACACGTTCAGCTTTACGGATGTGTGCATGTTCTAGCGTATGCGAGCGAACACTGGGACACCAGCACTGTGTAAATGTGGGAGAGTGGATGAATGTCTGATTTGGTAGCATGCACTGGGCTACTGGACCACTCAGCCAAAAGCCTATGAAGCTAGTgagaatttatttaaaaaaaatttctcCCCTTTCCTTTCCTTAGAGTTGTATATCCATTTGTAAAGTATATTAAAGATGGGTTCTACTATGACTA

Function

symbol description
ube2f Predicted to enable NEDD8 conjugating enzyme activity. Predicted to be involved in protein neddylation. Predicted to be active in nucleus. Orthologous to human UBE2F (ubiquitin conjugating enzyme E2 F (putative)).

NR:

description
PREDICTED: NEDD8-conjugating enzyme UBE2F

GO:

id name namespace
GO:0045116 protein neddylation biological_process
GO:0019788 NEDD8 transferase activity molecular_function
GO:0005524 ATP binding molecular_function

KEGG:

id description
K10687 UBE2F; ubiquitin-conjugating enzyme E2 F

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007239760.3 True 1843 mRNA 0.51 10 25740227 25759643

Neighbor

gene id symbol gene type direction distance location
LOC111193460 NA coding upstream 220861 25484843 ~ 25519366 (+)
LOC103025458 NA coding upstream 290948 25423712 ~ 25449279 (+)
LOC111193564 NA coding upstream 317969 25419540 ~ 25422258 (+)
LOC103023109 NA coding upstream 353927 25382872 ~ 25386300 (+)
LOC103022503 NA coding upstream 365395 25372806 ~ 25374832 (+)
LOC103038099 erbb4,LOC108441681,LOC108440448,LOC101079286 coding downstream 4204 25763847 ~ 26023673 (+)
LOC111193484 NA coding downstream 316055 26075698 ~ 26078799 (+)
LOC103039357 NA coding downstream 429322 26188965 ~ 26193144 (+)
LOC103039973 NA coding downstream 485596 26245239 ~ 26248347 (+)
LOC111193566 NA coding downstream 490530 26250173 ~ 26254877 (+)
G106370 NA non-coding upstream 29771 25710216 ~ 25710456 (+)
G106289 NA non-coding upstream 173801 25563594 ~ 25566426 (+)
G106275 NA non-coding upstream 180199 25558581 ~ 25560028 (+)
G106286 NA non-coding upstream 185512 25552591 ~ 25554715 (+)
G106273 NA non-coding upstream 191244 25456120 ~ 25548983 (+)
G106391 NA non-coding downstream 195294 25954937 ~ 25960449 (+)
G106380 NA non-coding downstream 266601 26026244 ~ 26030682 (+)
G106446 NA non-coding downstream 463493 26223136 ~ 26228689 (+)
G106466 NA non-coding downstream 525249 26284892 ~ 26285416 (+)
G106476 NA non-coding downstream 550086 26309729 ~ 26309982 (+)
LOC111193565 NA other upstream 169406 25458815 ~ 25570821 (+)
LOC111193563 NA other upstream 370788 25361744 ~ 25369439 (+)
G106146 NA other upstream 1327129 24411208 ~ 24413098 (+)
G106036 NA other upstream 1750635 23987207 ~ 23989592 (+)
G106017 si:ch73-12o23.1,LOC108439175,LOC108258846,LOC107722961,LOC107590719 other upstream 1816456 23915635 ~ 23923771 (+)
LOC103037236 NA other downstream 394774 26154417 ~ 26171801 (+)
G106661 lancl1 other downstream 2254873 28014516 ~ 28022047 (+)
G106673 NA other downstream 2306709 28066352 ~ 28066983 (+)
LOC103027743 NA other downstream 2943424 28703067 ~ 28724026 (+)
LOC111193573 NA other downstream 3389422 29149065 ~ 29159680 (+)

Expression


Co-expression Network