LOC103026069


Basic Information

Item Value
gene id LOC103026069
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 541945 ~ 548280 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007241222.3
ttttatgaGATGCGTAACTTCAAAACCAGGTAGTTGTGAGTATTGATAGTACATTTATAGATCATTTTAAGTATTAAAGGGTATAAATTATTGAGGGATgtggttttaataaatatatatgtattgatTAGAGTGGCTATTATTAATTGGGGTTAGGGGTATAGATGGTTGAGGTATTGATAAATATGGATATTGATGAATATGGTATAGGTACTCATGAGTATTGATGAGTATGTAATTGTTGGTTGGAATGGGTATGGAATTGATTATATGAATATTGACTGGTATAGGAATTCGTGGTTGCAGTGGTATTGATCAGTATAGGTATTGTTAGTTATGCCTATTGATGTAATATTATAGATTGAAATGATTTATTGTGGGTGTATATGGGTATTGATTGGTATGGTAAAATGGGTATATCTGGTTCTGTTCTGAAGTCCAGAACCTACAGTCTCCATCTGCTCAACCCCTGAAGATACCCAGCCCAGTGTGGGATGGAGGTGGGCGGAGTTATGGAGGAGGGCAGAGTCGTTTTGGAGCTCCACATGTTATACGACTCGGAATCGCCCTGCAGCAGGTCTGTAGGAACTGATCTCTCCATGCAGGAAATCGGAAACCTCCAATCAGAAGTGAGGAAGCTGAGAGAGATCATCACCTCCCTGCAGGAGAAGCTGAAGGAACGAGCAGAGGAACTCTATAAAGAGGTGGAACCCAGTTTGTGTTCTGCCTGCAAAGTTAAACTGAAGAACACAGAGATACAGAACCTCTCAGGACTTAATCAGAACCCACTGCAGGACGTGGAGGAGGATGTATCCAGTGTGTATTCTGTGTGTAAGACTAAAATAGACTCTGGACTGGACCATGAGAACCTAAACTCACTGGAGGATGTGGAAGAGGCAGAGTCGGAGGATGATGATGGCGGATTCTCTTTGCAGTGCTACACCGACGCTGACCCTGACCCAACCAATTCCAATGACCCAAGCAAGCCCATTCCAACCAATCCCAACCTCAACCCAACCAACCACACCAAGCCCATCCTAACCAATCCCACCGACCCCGACTCCACCAATCCCAAgcccaacccaaccaaacccaCTTCCACAGACTGGGTGGAGCCAGGCTGTAATGGTGGACCACAGCATACACTCACCACTCCATTAAAGATGTGCTCGGTGAGACTGATGGACTGTGTAACGGCGGTCTCGACACTCGTGGACCACCACCAAGTAGAGCAGGAACCGATGGGAAACAACAGAGATGATGTCGATCATGAAGATCCCAGTTTTATTCCCTCTGGTGACGAGTCCAGTAATGAAGAAGGCCACGACCGAAAGAAACGCGATCACGTTCAACAGCAAAACCAGAGTTCAGGTCCATCGGATGGCCTGCATGTTGAGAGTGTGTCCCCCGGTGGGAAAACTTTCTCCTGTTCTCAGTGTAAGAAAATGTTCGGTAACCGGAAGAACCTTAGGGCGCATGAGAAGAGGCACAATGAGCAGAAGGACTTTCTCTGCGAGGTCTGCGACCTGAAGTTCATCAAGTTGTCAGAGCTGAAAAAGCATAGTTTGATGCACAAGGAAAAGGGCAAGTTCAGGTGTTCAGGCTGCAAGAAGAGCTTCCTCGATTCCTCCTTGTTAAGGAGTCACTCTTGCAATCTTCCTCTTTCAGGTGACAAGACTTGTGACAATGACAGGTCGCCTTCGAGTAAAGGTCACAAACAAAAGAAGTGTGATGTCACTGAACAGCAAAACCAGAACTTTGGGGAAAGTTCAGGTCCGTCGGACGACCTGCAGGTTGAGAATGTGTCTCTGGATGAGAAGAGGAAGTCGTTCTCCTGTTCTGTGTGTAAGAAATTGTATGCTAGTCTCAAGTACCTTAAGCTGCACGAGAAGAGGCACAACGAGGTGAAAGACTTCCTCTGCGAAGTCTGCAGCAGGTCGTTCATCAGTTTAACCGAGCTAAAAAAGCACATGTTAATGCACACGGGAGAGGGCAAGTTCAAGTGTCTGGTCTGCGGAAGGAGCTTCCTCAATTTGTCCAGCTTCAAACTTCACTCAGTAAGTCACAGCGATGAACGTGCTTTCAGCTGCGACGAGTGTGGAAGGAAATATAAGGTGAAAGGGTCACTCGTGGAGCACCAGAAGTCCCACACCGGGCTTCAACTGTTTCCGTGCTCCGACTGTGGCAAGACTTTCACCCACAAAAGGTACCTGAAGAAACACATGCTCCGCCACTCCAAGGAGAAGCAGTTCCAGTGCTCCTATTGCCAGAATAAGTTCTCGCAGCTGAACAGTCTGAAGACACATATGCGAATCCACAGCGACGACAAGCCGTACAAGTGCTCTCACTGCGGCAAAGGTTTCAGACATAAGGTGCATATGCAGTGTCATGAGAGAACACATACTGGAGAGAAGCCGTACCTCTGCGCCGACTGCGGGAAGAGTTTCTCCGATCCATCGCATTTCAACGAGCACAAGCGGTTGCACACCGGCGAACGGCCTTACGTCTGCACCACCTGCGGCAAGAGTTTCAGCAAGAAGATCACTCTTCGCCAGCATGAGAAAATACACACTGGAGAAAAGCCATATAAGTGCACGGAGTGCGAGAAGACCTTCGCAAGGCCCTGCGTATTCAAAAACCACCTGAGGATTCATACCGGTGAAAAGCCCTACCAGTGCCCCATCTGCAAGGAAAAGTTTACCTTTTTAAGTTCTCTGAACAGCCACAAGAAAAAACATGCTGCAGATATTCCACTCGTGACCACCTGATCAGTAACAGGTAAAGCGAGGTGGGGGAACGGGGATTGTGAAAAAATTGCCTGCATCGGATCCGAATTTCAGCGCTGCAAGAGAAAAATGTCTGTGTAGAATGACATAGTGAAAGAGTAGTAAAATTTGAGTGACAGCATGTGACCATACGACGAGAAGACTAGCATGTTTGACATGCTCGGCGACACGCTCCCTGGCACTGACCTATAGCCATGATTGACAGATTCTTTGCTCCTCCTCGGCAATGACCTACGAACTCAACGCAAGGACGTGGACGACAATTGGTCAGTGACTTGCGTGTGGTGTTGCCTGTTCCCCAAGTAAGAAACAAAATGAAGATGATTGCTTAAttgacatagtgaacatcgtgAGAGACTAAAAAATTGCGTAGTCTGAGCTTGGAATAAGACATGGGACAGAATATGCATCTCCCAAAAGACACCGAGGTTCTCCAGGCAGTGGTTTGTACCCACGGACACTTAATCCATGTTCAGAAAGaataatttttaattggtcTTTGGGTTTTGTTCCAAATATCAGAGCAGCTCTACTGATGACAACCAGATCCTTACCTCCAGAAACTGTTTAACTGTaaagattgtttttattatttttgcataCTGTGAAATGCTGTGTGAAACACTCACGGGTgttaaattattacaaaaagacatgatttttaaatttgttttttaataaaataaaaatattggcatATTGAGTATTTTTCCTTGAAACACTACATGGCCAAAAGATCAGTCAAAATTCTTAGACTCACACTGAGAACATCGTCTTACTGTACATCTGCGGGAGCAGCCTTcagctttcaaaataaaagtccttctCAATGCATTTTGTTGTACCTTTcattaaacagtataaaaatataaatgttatatatgcAGAAACTGAATGTTGAACATGCAGTAATGAATCGTTTTTAGTCACTGGAGAAAAGAATGCATAATGGATACGCGAACAAATGCTTTTTGTACATATTGGAAATATGTACAGCGCCCCCACCAGGCCAACCTTTTAGGATTCTGCAACAAacaacaatgaaaaacaaacaaaaaaaaaaaacagagattatGAATTATGTTCAGCCAGTTCAAAATGTTAATCTGTCCATTTGTGAGTTCCTTTATCTCAGTATAAAGacgataaaatatattaaaacaatcgttaaaaaaataataaaatacaattacagCAAATGTACAGTCCCCTCCCCATCAACACAAGTACAGGCATTTATTCGAGACATGTTGGGTGTCTAAGGTTCCCTTGGAGCTACgatgctaatgtggctaacaagCAATGGAATCCTATAGTCCAccaattagcatggtgctaactcCATATCCAGTCATTGCACAGTCTTGTCAAACCCTCTATAAAAGGGTTCAGTGATCTCCAGCAAACCTGCTGTAGTGTTACACTGTATAGCAGCAAAAATACATACTGGATATAAAAGCCTAACTTCCTCCATTCaatacttaaaatacatttttttgtatttttactggatacatacatacaaagaGCAACACCCAAGTAAGGGACCCTTGCTGCTTACCTCTGCAGTACTGCACTAAAAAAAGTACATACTGGAAGAAGATGCTTTCATCGAGGttcaagtatttaaaaaatacataccgGAAAAGCTTTACCTCTAATATTTAATACTTGTAAAATACTTAATGGAGAAGAGTTTACTCTGGGTGTAATAATTTGGAATTAAATACTGGACAAAAGCGTTTAGtatgtacaaaaatgtatagaagccatacatacatttaacataaaaaaaaacttttaaatacaTACTGGGAAACTTTTGGGATTCAACAGGTATAACTTAATGGAGACATTActaatagaatacattttagagacttacctctgaacacattct
>XM_007241223.3
GTAGAGGTTTAAACgcaaagagaagaggagagtaATCAGAGAAGTCCAGAACCTACAGTCTCCATCTGCTCAACCCCTGAAGATACCCAGCCCAGTGTGGGATGGAGGTGGGCGGAGTTATGGAGGAGGGCAGAGTCGTTTTGGAGCTCCACATGTTATACGACTCGGAATCGCCCTGCAGCAGGTCTGTAGGAACTGATCTCTCCATGCAGGAAATCGGAAACCTCCAATCAGAAGTGAGGAAGCTGAGAGAGATCATCACCTCCCTGCAGGAGAAGCTGAAGGAACGAGCAGAGGAACTCTATAAAGAGGTGGAACCCAGTTTGTGTTCTGCCTGCAAAGTTAAACTGAAGAACACAGAGATACAGAACCTCTCAGGACTTAATCAGAACCCACTGCAGGACGTGGAGGAGGATGTATCCAGTGTGTATTCTGTGTGTAAGACTAAAATAGACTCTGGACTGGACCATGAGAACCTAAACTCACTGGAGGATGTGGAAGAGGCAGAGTCGGAGGATGATGATGGCGGATTCTCTTTGCAGTGCTACACCGACGCTGACCCTGACCCAACCAATTCCAATGACCCAAGCAAGCCCATTCCAACCAATCCCAACCTCAACCCAACCAACCACACCAAGCCCATCCTAACCAATCCCACCGACCCCGACTCCACCAATCCCAAgcccaacccaaccaaacccaCTTCCACAGACTGGGTGGAGCCAGGCTGTAATGGTGGACCACAGCATACACTCACCACTCCATTAAAGATGTGCTCGGTGAGACTGATGGACTGTGTAACGGCGGTCTCGACACTCGTGGACCACCACCAAGTAGAGCAGGAACCGATGGGAAACAACAGAGATGATGTCGATCATGAAGATCCCAGTTTTATTCCCTCTGGTGACGAGTCCAGTAATGAAGAAGGCCACGACCGAAAGAAACGCGATCACGTTCAACAGCAAAACCAGAGTTCAGGTCCATCGGATGGCCTGCATGTTGAGAGTGTGTCCCCCGGTGGGAAAACTTTCTCCTGTTCTCAGTGTAAGAAAATGTTCGGTAACCGGAAGAACCTTAGGGCGCATGAGAAGAGGCACAATGAGCAGAAGGACTTTCTCTGCGAGGTCTGCGACCTGAAGTTCATCAAGTTGTCAGAGCTGAAAAAGCATAGTTTGATGCACAAGGAAAAGGGCAAGTTCAGGTGTTCAGGCTGCAAGAAGAGCTTCCTCGATTCCTCCTTGTTAAGGAGTCACTCTTGCAATCTTCCTCTTTCAGGTGACAAGACTTGTGACAATGACAGGTCGCCTTCGAGTAAAGGTCACAAACAAAAGAAGTGTGATGTCACTGAACAGCAAAACCAGAACTTTGGGGAAAGTTCAGGTCCGTCGGACGACCTGCAGGTTGAGAATGTGTCTCTGGATGAGAAGAGGAAGTCGTTCTCCTGTTCTGTGTGTAAGAAATTGTATGCTAGTCTCAAGTACCTTAAGCTGCACGAGAAGAGGCACAACGAGGTGAAAGACTTCCTCTGCGAAGTCTGCAGCAGGTCGTTCATCAGTTTAACCGAGCTAAAAAAGCACATGTTAATGCACACGGGAGAGGGCAAGTTCAAGTGTCTGGTCTGCGGAAGGAGCTTCCTCAATTTGTCCAGCTTCAAACTTCACTCAGTAAGTCACAGCGATGAACGTGCTTTCAGCTGCGACGAGTGTGGAAGGAAATATAAGGTGAAAGGGTCACTCGTGGAGCACCAGAAGTCCCACACCGGGCTTCAACTGTTTCCGTGCTCCGACTGTGGCAAGACTTTCACCCACAAAAGGTACCTGAAGAAACACATGCTCCGCCACTCCAAGGAGAAGCAGTTCCAGTGCTCCTATTGCCAGAATAAGTTCTCGCAGCTGAACAGTCTGAAGACACATATGCGAATCCACAGCGACGACAAGCCGTACAAGTGCTCTCACTGCGGCAAAGGTTTCAGACATAAGGTGCATATGCAGTGTCATGAGAGAACACATACTGGAGAGAAGCCGTACCTCTGCGCCGACTGCGGGAAGAGTTTCTCCGATCCATCGCATTTCAACGAGCACAAGCGGTTGCACACCGGCGAACGGCCTTACGTCTGCACCACCTGCGGCAAGAGTTTCAGCAAGAAGATCACTCTTCGCCAGCATGAGAAAATACACACTGGAGAAAAGCCATATAAGTGCACGGAGTGCGAGAAGACCTTCGCAAGGCCCTGCGTATTCAAAAACCACCTGAGGATTCATACCGGTGAAAAGCCCTACCAGTGCCCCATCTGCAAGGAAAAGTTTACCTTTTTAAGTTCTCTGAACAGCCACAAGAAAAAACATGCTGCAGATATTCCACTCGTGACCACCTGATCAGTAACAGGTAAAGCGAGGTGGGGGAACGGGGATTGTGAAAAAATTGCCTGCATCGGATCCGAATTTCAGCGCTGCAAGAGAAAAATGTCTGTGTAGAATGACATAGTGAAAGAGTAGTAAAATTTGAGTGACAGCATGTGACCATACGACGAGAAGACTAGCATGTTTGACATGCTCGGCGACACGCTCCCTGGCACTGACCTATAGCCATGATTGACAGATTCTTTGCTCCTCCTCGGCAATGACCTACGAACTCAACGCAAGGACGTGGACGACAATTGGTCAGTGACTTGCGTGTGGTGTTGCCTGTTCCCCAAGTAAGAAACAAAATGAAGATGATTGCTTAAttgacatagtgaacatcgtgAGAGACTAAAAAATTGCGTAGTCTGAGCTTGGAATAAGACATGGGACAGAATATGCATCTCCCAAAAGACACCGAGGTTCTCCAGGCAGTGGTTTGTACCCACGGACACTTAATCCATGTTCAGAAAGaataatttttaattggtcTTTGGGTTTTGTTCCAAATATCAGAGCAGCTCTACTGATGACAACCAGATCCTTACCTCCAGAAACTGTTTAACTGTaaagattgtttttattatttttgcataCTGTGAAATGCTGTGTGAAACACTCACGGGTgttaaattattacaaaaagacatgatttttaaatttgttttttaataaaataaaaatattggcatATTGAGTATTTTTCCTTGAAACACTACATGGCCAAAAGATCAGTCAAAATTCTTAGACTCACACTGAGAACATCGTCTTACTGTACATCTGCGGGAGCAGCCTTcagctttcaaaataaaagtccttctCAATGCATTTTGTTGTACCTTTcattaaacagtataaaaatataaatgttatatatgcAGAAACTGAATGTTGAACATGCAGTAATGAATCGTTTTTAGTCACTGGAGAAAAGAATGCATAATGGATACGCGAACAAATGCTTTTTGTACATATTGGAAATATGTACAGCGCCCCCACCAGGCCAACCTTTTAGGATTCTGCAACAAacaacaatgaaaaacaaacaaaaaaaaaaaacagagattatGAATTATGTTCAGCCAGTTCAAAATGTTAATCTGTCCATTTGTGAGTTCCTTTATCTCAGTATAAAGacgataaaatatattaaaacaatcgttaaaaaaataataaaatacaattacagCAAATGTACAGTCCCCTCCCCATCAACACAAGTACAGGCATTTATTCGAGACATGTTGGGTGTCTAAGGTTCCCTTGGAGCTACgatgctaatgtggctaacaagCAATGGAATCCTATAGTCCAccaattagcatggtgctaactcCATATCCAGTCATTGCACAGTCTTGTCAAACCCTCTATAAAAGGGTTCAGTGATCTCCAGCAAACCTGCTGTAGTGTTACACTGTATAGCAGCAAAAATACATACTGGATATAAAAGCCTAACTTCCTCCATTCaatacttaaaatacatttttttgtatttttactggatacatacatacaaagaGCAACACCCAAGTAAGGGACCCTTGCTGCTTACCTCTGCAGTACTGCACTAAAAAAAGTACATACTGGAAGAAGATGCTTTCATCGAGGttcaagtatttaaaaaatacataccgGAAAAGCTTTACCTCTAATATTTAATACTTGTAAAATACTTAATGGAGAAGAGTTTACTCTGGGTGTAATAATTTGGAATTAAATACTGGACAAAAGCGTTTAGtatgtacaaaaatgtatagaagccatacatacatttaacataaaaaaaaacttttaaatacaTACTGGGAAACTTTTGGGATTCAACAGGTATAACTTAATGGAGACATTActaatagaatacattttagagacttacctctgaacacattct

Function

GO:

id name namespace
GO:0044424 obsolete intracellular part cellular_component
GO:0005634 nucleus cellular_component
GO:0043226 organelle cellular_component
GO:0043229 intracellular organelle cellular_component

KEGG:

id description
ko04110 Cell cycle

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007241222.3 True 4686 mRNA 0.43 3 543178 548280
XM_007241223.3 False 4293 mRNA 0.44 4 541945 548280

Neighbor

gene id symbol gene type direction distance location
LOC107197104 NA coding upstream 82169 454872 ~ 459776 (+)
gtf3c1 NA coding upstream 200208 311666 ~ 341737 (+)
rexo5 NA coding upstream 248566 276653 ~ 293379 (+)
LOC103028503 NA coding upstream 318724 216013 ~ 223221 (+)
LOC111193578 NA coding upstream 353346 187147 ~ 188599 (+)
LOC103043293 LOC108413567,LOC107572909 coding downstream 108388 656668 ~ 728123 (+)
LOC103030233 LOC108413570 coding downstream 186801 735081 ~ 757324 (+)
mvb12a NA coding downstream 220729 769009 ~ 779862 (+)
LOC111193580 NA coding downstream 258734 807014 ~ 809445 (+)
LOC103028614 LOC108415945,LOC106564086 coding downstream 266180 814460 ~ 829481 (+)
LOC111193491 NA non-coding upstream 9858 530003 ~ 532087 (+)
G99568 NA non-coding upstream 12837 501095 ~ 529108 (+)
G99478 NA non-coding upstream 118641 381194 ~ 423304 (+)
G99497 NA non-coding upstream 122233 419206 ~ 419712 (+)
G99466 NA non-coding upstream 169328 340099 ~ 372617 (+)
G99582 NA non-coding downstream 21377 569657 ~ 575403 (+)
G99588 NA non-coding downstream 32072 580352 ~ 580737 (+)
G99596 NA non-coding downstream 58100 606380 ~ 612000 (+)
G99604 NA non-coding downstream 83225 631505 ~ 631834 (+)
LOC103024499 NA non-coding downstream 241826 790106 ~ 792100 (+)
LOC111193579 NA other upstream 1474 534029 ~ 540471 (+)
LOC103036139 NA other upstream 45569 487474 ~ 496376 (+)
G99561 NA other upstream 59726 474660 ~ 482219 (+)
LOC103031902 NA other upstream 504881 20991 ~ 37064 (+)
LOC111193492 NA other downstream 41903 590183 ~ 593200 (+)
ubl5 ubl5 other downstream 560196 1108476 ~ 1110592 (+)
G99710 NA other downstream 633147 1181427 ~ 1184269 (+)
LOC111193582 NA other downstream 748135 1296415 ~ 1298377 (+)
LOC111193593 NA other downstream 1297211 1845491 ~ 1853019 (+)

Expression


Co-expression Network