LOC103031172 (LOC103031172,LOC108439360)


Basic Information

Item Value
gene id LOC103031172
gene name LOC103031172,LOC108439360
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 14282927 ~ 14290159 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007241890.3
TGCGGAGAGCCGGGTGCTGCTCCATGTCTCGGGGTGATCGGCGctccgcagcagcagcagggtgaGCGCGAGCAGCGAGTCCGGAAAGAATCAGCAGGGAGCGCGAGACCGAGCAGCGCGAGAGCACCATGCCCGCACAGAGTAAAGACGACGGGGGCTGGAAGAAGTTCATGTGGAATTCGGAGACGCGCGAGGTGCTGGGGCGCACCGGAGGCAGCTGGGCAAAGATCCTCCTGTTCTATGTCATCTTTTATGGCTTCCTAGCTGGAATCTTCATTGGCACCATCCAGGCCCTTCTCCTCACCTTGAGCAACTACAAACCCACCTGGCAGGACAGAATTGCTCCTCCAGGGCTCACCCACACCCCTCGCTCAGACAAATCTGAGCTTTCATTCAGCGTAAATGATGTGGAAACGTATTTGAAATACACAAAATCCATGAGAGAATTCCTGGAGGCCTATAATGAAGAAACCCAAAGAGACCAAATGAAGTTTGAAGACTGTGGAGACCAACCTCAAGAGTACAAGCACCGGGGAGATCTGGAGAGTGATATCGGTGCCAGAAAGGCTTGTCGATTCCAGAGGACTTTTCTTGGGCCTTGCTCAGGCATTGAAGATAAGGAATTTGGCTTTAGCGAGGGAAAACCCTGCCTGATTGTTAAGCTCAATAGGATTGTGAATTTCAAACCAAAGCCCCCACTGACCAATGAGTCTATCCCAGAAGAGGCCCAGCACAAAATCCAGCGCAATGTGATTCCAATTTACTGCCataataagAGAGAAGAAGACGAGGGTAAACTTGGGGAAGTGAAATACTATGGCATCGGAGGAGGCTTCCCCCTCCAGTATTACCCGTACTACGGAAAGCTCCTGCACCCACAGTACCTGCAGCCTCTTGTGGCGGTCCAGTTTGTTAACCTGACCATGAACTACGAGCTCCGCATTGAGTGCAAAGTGTTCGGTGAAAACATTCACTACAGCGACAAGGATCGCTACCAGGGACGCTTCGACATTAAAATGACCATCAACAACTATTGACCTCCGTCGTGAGCGCAGCACCTTTACTCTCTCCCAGTTTTAAGGACCATCTTCTGACTTGAGATACACAGGCATCTGACCGATCCTCCCTGCTGGTCTTCCACAGTCTCTCGCCGAGgggatgcaaaaaaataagtgtcTCACGTCAGAAAGTGGCCTTTCTGGATAGTTTAGcagaggtttaaaaaaaagtttcaaaaacCAGTCCATACAAATCCATCACATGTGGGACCTGACGTTATTTGTCTGCTTCAATGCGAGCTTTCTGCTTCCATATAGGGTTAGAATGTAAATGCCTGGAGGACTAGCCATAGCatatactgttatactaataaatgaaaacaattcATGAGCTAAGGGACATATTCTTTTTATTGAAAAGTCCACCAAGAATGTAGTCAGTACTGTTCTGTCAATCTATTACTATATATCCACCACCACGTGTGGGTTTGCTCCACTTTTAAAGTGCACGGTAGTCGCATATGTAGGTCGTTCCAAGCCAAGCCATGTGTGATTCAGCTTTATTCAACTGTGCAtatctgtattctgtattcttCTTCACCAAATGCACAAAACACTGCTCCACCTGCATTTGGAGGTATTTTAGAGATGTtagctttctttctctgtctctgtagtAACATGTAGGCCTTTATGTTcttaaatatttgtttgtttgttctttaaAATCGTTGCGACGGGGAAGAATTGTGTTTCATCTTGATTTCATCTCTGAATGTATGTTGATATTGCCTTTAAACAAAATACTGTATTGTAAGAACTGATGCTATGTGTCTTACTATGTTTCTTTTCCTCTGTCTGCCTTTGGTCTTACATCACACAGTGTGGTGTATCGCTCACaagaatgttttaaatatttatgtaagGAGATCCATTTATGTAATTGCACAGGAAACAGGTTTCTGCAGGAAACCTTTCTGTGTAATAATACCAAAACCATTATACTGGTGATATTAGACGCATTATTATCATTGTGACGCCCCATTCTGTAGAATGTTTTGTAGATGTGTGCAGTCGGTGTCTACCATCAAACATCTGCCATATCACATGAGTCCCTTTAACTCCAATGCTAAAACTAGTCTGTGCTTGGTTTCCCAAAAGTACAGCTTAACGATCATTCTAAGATGGTAAAAATgagcatatatttaaatattctctCTGAAAGAGGACGCACAATGATCTGAAtaatgcttttgggaaacataGCTCTCAAGAGaattaaccaaaataaaaatacaaataaacgtTAAGTCTG

Function

NR:

description
sodium/potassium-transporting ATPase subunit beta-233-like

GO:

id name namespace
GO:0006813 potassium ion transport biological_process
GO:0006814 sodium ion transport biological_process
GO:0005890 sodium cellular_component

KEGG:

id description
K01540 ATP1B, CD298; sodium/potassium-transporting ATPase subunit beta

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007241890.3 True 2313 mRNA 0.44 6 14282927 14290159

Neighbor

gene id symbol gene type direction distance location
LOC103033906 LOC108258922,LOC108439361,LOC107564279,LOC107692629,LOC107665976 coding upstream 38871 14223980 ~ 14244056 (+)
LOC111193619 NA coding upstream 221384 14051804 ~ 14061543 (+)
eif3f eif3f,LOC107723164,LOC107758850,LOC107665937 coding upstream 355129 13921248 ~ 13927798 (+)
LOC103047056 npy2rl,LOC108439369,LOC107758849,LOC107590775,LOC107714138,LOC107665946,LOC107692719 coding upstream 477698 13773430 ~ 13805229 (+)
LOC103023349 LOC108439383,LOC108258976 coding upstream 602706 13676444 ~ 13680221 (+)
LOC103031792 LOC108439359,LOC107723198,LOC107564241,LOC107692626,LOC100334711 coding downstream 18767 14308926 ~ 14330415 (+)
knl1 NA coding downstream 98299 14388458 ~ 14409396 (+)
dmd LOC108439357 coding downstream 120524 14410683 ~ 14664759 (+)
LOC103039857 caly,LOC103039857,LOC108434710,LOC108258305,LOC105891014,LOC107583165,LOC107684294 coding downstream 1945869 16236028 ~ 16254238 (+)
LOC103039552 NA coding downstream 2030963 16321122 ~ 16325115 (+)
G103491 NA non-coding upstream 20949 14261603 ~ 14261978 (+)
G103488 NA non-coding upstream 23501 14258824 ~ 14259426 (+)
G103485 NA non-coding upstream 28081 14254370 ~ 14254846 (+)
G103482 NA non-coding upstream 33102 14249120 ~ 14249825 (+)
G103464 NA non-coding upstream 83351 14199037 ~ 14199576 (+)
G103477 NA non-coding downstream 609 14290768 ~ 14291254 (+)
G103495 NA non-coding downstream 10703 14300862 ~ 14301289 (+)
G103505 NA non-coding downstream 53511 14343670 ~ 14344468 (+)
LOC111193540 NA non-coding downstream 83495 14373654 ~ 14375532 (+)
G103517 NA non-coding downstream 87600 14377759 ~ 14387696 (+)
G103490 LOC106510829 other upstream 21388 14260625 ~ 14261539 (+)
G103376 zgc:77880,LOC108439367,LOC107692630,LOC107723165,LOC103363053,LOC107758853,LOC105904859,LOC107590776 other upstream 347260 13929065 ~ 13935667 (+)
sh3pxd2a sh3pxd2a other upstream 1250421 12851001 ~ 13032506 (+)
cryzl1 cryzl1 other upstream 1760624 12483622 ~ 12522303 (+)
cab39l cab39l,LOC107676861,LOC107718429 other upstream 2258163 12000639 ~ 12024764 (+)
G103551 NA other downstream 328476 14618635 ~ 14619082 (+)
G103561 NA other downstream 400884 14691043 ~ 14692199 (+)
LOC103032764 LOC108443686,LOC108258285,LOC107746061,LOC107684317,LOC107566138,LOC105891017,LOC107690754,LOC107086972 other downstream 709296 14999455 ~ 15297939 (+)
G104000 NA other downstream 2161016 16451175 ~ 16458209 (+)
col17a1 col17a1,LOC108434660,LOC107684270,LOC107583183 other downstream 2173779 16463938 ~ 16507787 (+)

Expression


Co-expression Network