LOC103031288


Basic Information

Item Value
gene id LOC103031288
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 5454692 ~ 5457457 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007246636.3
TAAAAGAAACCCGtttttgaactgtttttttggGGACTATTTCCAGATGTTTGGACTCTAGCCTTGTTTTTTGTAGTCTTGCTTTTTCTGTAGTTTAGCTGTTTACGTTAAAATCCCTTTACACACAGCTTTAATGTAAAAGGAAGGTGGATGTttaggtgtgtgtatatgtagttAGGTGTGGGTGTATGGTgtctaacctacctacctatcaaataattaatatataacttATGAAAACAACATCAGCAGTACCACCAGCAGCAACCACAGCAACATCAGAAAAATGGAGCAACCGTTTTATCATGACGACTCGTTTCTCTCTGCTTATGGCCATCCAGACGCTGCTCTGCACGACTACAAGCTCCTCAAGCAGAACATGACGGCGGGCTTCGCTGAGCAGTACCGGAGCCTCAAGTGCCTGAGGGGGGAAAGCGACTTCTACGGGGCTGCCGCTGGAGCAGGGGACGCGGCATCGCTCAAGCTTGCCTCGTCCGAGCTGGAGAGGCTCATCGGTGGTTCTGGAGGAGGCGGAGGAGTTGTGGGTGGTGTGATCACCAGCCCGAGTACCGGTGCCAGTGCTGGCGCCGGCCCTGGAGGGGTACCACTCcagcatcagcatcaccaccaaTTGTACGCTCGCACCATTGCCGAAGACCAAGAAGGCTTCGCCGACGGCTTCGTCAAGGCTCTAGACGAGCTTCACAAGATGAACCACGTCCCCCCACCCAACGTGGCACTCGGAGGAGCCGCCGCTGCCACTGCAGCCACCACAGCCACAGGTGGTGCCTCCTCATGCGCCAGTGCCGCCTCCAGTGTCTTCCCGGACACTCCAGTGTACGCCACTCTCAGCAGCTGCCATCCAAACACTAACGTCTCTGGCCTTCCACCGGCAGCCAGCGGCTACCCCACTGCCACCATCAGCTACCTGCCTcaataccaccaccaccaccatcttcagcatcatcagcaccaccaccagcacaacCCCCACAACAACCACCACAGCCACCACCAACCTCCCAGCCATCACTTCCAGCACGCCGCCAGACTAGCCGGCCTCAAAGAGGAGCCCCAGACCGTGCCAGACCTGCAAGGGGACAGCTCGCCGCCCACGTCGCCCGTGGACCTGGAGGACCAGGAGCGCATGAAGGCTGAGCGCAAGCGGCTACGCAACCGCCTGGCGGCCACCAAGTGCAGGAAGCGCAAGCTGGAGCGCATCTCGCGCCTGGAGGACAAGGTGAAGGTGCTGAAGACGGACAACGCCGGGCTCTCGAGCGCCGCCTCGCTGCTGCGCGAGCAAGTGGCGCAGCTCAAGCAGAAGGTCATGACGCACGTCAGCAGCGGGTGCCAACTGATGCTGGCCCCCAAGATTAAGACGTACTGACGATGCTGATAAGGTACTGATACGGTACTGATAAAGTAGTACGGGAGTACTGGACAGTGTTTTATTGATACAGGACAATGCACTCTGAAATGGACAgtctgtgtttaagtgtgtgtgtgttgcgagGATGCTCACACTTAAGATGCATACAACCCAACACAACatgggtgaaaaaaaaagtactggacAGTGTGTGTTGATAATGGACATAAGTGCATACTGAcatggacagtgtgtgtgtgtgtgtatgtacattgGGAGGGACGGGTCAAAACTTGCTCTAAGTGAAATGATGACTTTAcaaactctgtgtgtgtttgaatgtatTGAGAAGCTTTAAACCAACTTTAAAGGTGcaatatatagttttttcttGACAACACATGCACTGAACTCTAATGAACTCAAAATGATTATTACACAACATtataaatcactaaatattGCATATTAGCAACTTCGtgagctttaaaacagaaaaaaggaatCATAGCTGTaaagaaatactgtatattgcacCTTTAAAAACTATGtttgagtgtgtatttgtgtgtttctttgtgtATGTTGGGGAATGGGCTGCACACACCTAagatttaaaagttttattcactataaaacaaaaaagtaggttgtgtgtgtgtgtctgtgtgattgagagagagaatgccatacaatgcaaaaaaacacacacgaaaaaaaataatgatgcatTTTTTGAATGCAACCAGTCCTGCAGCACTGAGCATTTCATGCATTTTGTTAATTGTTGTTTTCTTGTAGAAAActtgttttacttttaattttgtgttgctctcttttgttttactgttttaaagcatttccttccttacttttaaaaacaaaaacatactttttgttTGTGAGGTACTTCCCTGTGAAATGAAATGGGAACAAAAAATGCACACAACAAGGTGGGAggggctttttttatttaaaaagaaaaggaagcaAGAAAAAGACCCTAAAATATGACCTGAttcacattatttttatgtgaGTGATATCCTATGAATACATTGCAGTAAGTTATTGTCACTGTATAAGTCTGTGTGTAGTatatgtgtacgtgtgtgtgtctggttgAGCTGGACTGAACTGtaaactgtagaaaaaaaattcattttttcattttttgttgatttttcttttcgtatttaagtaaaatcctttaaaacatT
>XM_007246637.3
ATTCTGTTGAGAGCAGAGCTGCGAGAGGCGAGGAGTGAAGGATTGAATTTGTGTTTATATAGAGGCGATTTAGAAGCGAAGAAGTAATTTTTTCGGGGAAGGAGGAGTGTGAAAGAGTGTGGAGGAGTGTCACGAAGTTCTGGACTGCGCTCTGAGACAGCTGTCGACTTGACGCTGCTCTGCACGACTACAAGCTCCTCAAGCAGAACATGACGGCGGGCTTCGCTGAGCAGTACCGGAGCCTCAAGTGCCTGAGGGGGGAAAGCGACTTCTACGGGGCTGCCGCTGGAGCAGGGGACGCGGCATCGCTCAAGCTTGCCTCGTCCGAGCTGGAGAGGCTCATCGGTGGTTCTGGAGGAGGCGGAGGAGTTGTGGGTGGTGTGATCACCAGCCCGAGTACCGGTGCCAGTGCTGGCGCCGGCCCTGGAGGGGTACCACTCcagcatcagcatcaccaccaaTTGTACGCTCGCACCATTGCCGAAGACCAAGAAGGCTTCGCCGACGGCTTCGTCAAGGCTCTAGACGAGCTTCACAAGATGAACCACGTCCCCCCACCCAACGTGGCACTCGGAGGAGCCGCCGCTGCCACTGCAGCCACCACAGCCACAGGTGGTGCCTCCTCATGCGCCAGTGCCGCCTCCAGTGTCTTCCCGGACACTCCAGTGTACGCCACTCTCAGCAGCTGCCATCCAAACACTAACGTCTCTGGCCTTCCACCGGCAGCCAGCGGCTACCCCACTGCCACCATCAGCTACCTGCCTcaataccaccaccaccaccatcttcagcatcatcagcaccaccaccagcacaacCCCCACAACAACCACCACAGCCACCACCAACCTCCCAGCCATCACTTCCAGCACGCCGCCAGACTAGCCGGCCTCAAAGAGGAGCCCCAGACCGTGCCAGACCTGCAAGGGGACAGCTCGCCGCCCACGTCGCCCGTGGACCTGGAGGACCAGGAGCGCATGAAGGCTGAGCGCAAGCGGCTACGCAACCGCCTGGCGGCCACCAAGTGCAGGAAGCGCAAGCTGGAGCGCATCTCGCGCCTGGAGGACAAGGTGAAGGTGCTGAAGACGGACAACGCCGGGCTCTCGAGCGCCGCCTCGCTGCTGCGCGAGCAAGTGGCGCAGCTCAAGCAGAAGGTCATGACGCACGTCAGCAGCGGGTGCCAACTGATGCTGGCCCCCAAGATTAAGACGTACTGACGATGCTGATAAGGTACTGATACGGTACTGATAAAGTAGTACGGGAGTACTGGACAGTGTTTTATTGATACAGGACAATGCACTCTGAAATGGACAgtctgtgtttaagtgtgtgtgtgttgcgagGATGCTCACACTTAAGATGCATACAACCCAACACAACatgggtgaaaaaaaaagtactggacAGTGTGTGTTGATAATGGACATAAGTGCATACTGAcatggacagtgtgtgtgtgtgtgtatgtacattgGGAGGGACGGGTCAAAACTTGCTCTAAGTGAAATGATGACTTTAcaaactctgtgtgtgtttgaatgtatTGAGAAGCTTTAAACCAACTTTAAAGGTGcaatatatagttttttcttGACAACACATGCACTGAACTCTAATGAACTCAAAATGATTATTACACAACATtataaatcactaaatattGCATATTAGCAACTTCGtgagctttaaaacagaaaaaaggaatCATAGCTGTaaagaaatactgtatattgcacCTTTAAAAACTATGtttgagtgtgtatttgtgtgtttctttgtgtATGTTGGGGAATGGGCTGCACACACCTAagatttaaaagttttattcactataaaacaaaaaagtaggttgtgtgtgtgtgtctgtgtgattgagagagagaatgccatacaatgcaaaaaaacacacacgaaaaaaaataatgatgcatTTTTTGAATGCAACCAGTCCTGCAGCACTGAGCATTTCATGCATTTTGTTAATTGTTGTTTTCTTGTAGAAAActtgttttacttttaattttgtgttgctctcttttgttttactgttttaaagcatttccttccttacttttaaaaacaaaaacatactttttgttTGTGAGGTACTTCCCTGTGAAATGAAATGGGAACAAAAAATGCACACAACAAGGTGGGAggggctttttttatttaaaaagaaaaggaagcaAGAAAAAGACCCTAAAATATGACCTGAttcacattatttttatgtgaGTGATATCCTATGAATACATTGCAGTAAGTTATTGTCACTGTATAAGTCTGTGTGTAGTatatgtgtacgtgtgtgtgtctggttgAGCTGGACTGAACTGtaaactgtagaaaaaaaattcattttttcattttttgttgatttttcttttcgtatttaagtaaaatcctttaaaacatT

Function

GO:

id name namespace
GO:0060047 heart contraction biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007246636.3 True 2589 mRNA 0.46 1 5454869 5457457
XM_007246637.3 False 2419 mRNA 0.48 2 5454692 5457457

Neighbor

gene id symbol gene type direction distance location
rad23a rad23a coding upstream 383550 5060535 ~ 5071142 (+)
LOC103026170 NA coding upstream 650145 4796254 ~ 4804547 (+)
LOC103042234 meis1,LOC107757034 coding upstream 667807 4730629 ~ 4786885 (+)
LOC103025559 actr2,LOC108423375,LOC108441254,LOC104930021,LOC106585927,LOC107583198 coding upstream 783356 4648447 ~ 4671336 (+)
LOC103024921 LOC108441252,LOC108258536 coding upstream 829844 4507634 ~ 4624848 (+)
rnaseh2a rnaseh2a,LOC107747423 coding downstream 20078 5477535 ~ 5486445 (+)
snrpb2 snrpb2,LOC107684252,LOC107676294 coding downstream 30005 5487462 ~ 5493881 (+)
LOC103027484 LOC108441199,LOC108258526 coding downstream 60616 5518073 ~ 5527443 (+)
fbxo48 fbxo48,LOC107684254 coding downstream 129832 5587289 ~ 5590899 (+)
cenpk cenpk coding downstream 204359 5661816 ~ 5669700 (+)
G101186 NA non-coding upstream 90345 5363866 ~ 5364347 (+)
G101167 NA non-coding upstream 170849 5279027 ~ 5283843 (+)
G101020 NA non-coding upstream 177201 5277264 ~ 5277491 (+)
G101007 NA non-coding upstream 277552 5173943 ~ 5177140 (+)
G100974 NA non-coding upstream 370887 5081767 ~ 5083805 (+)
G101207 NA non-coding downstream 8493 5465950 ~ 5466415 (+)
G101232 NA non-coding downstream 56926 5514383 ~ 5514689 (+)
G101245 NA non-coding downstream 87958 5545415 ~ 5546545 (+)
G101247 NA non-coding downstream 102400 5559857 ~ 5567450 (+)
LOC111193477 NA non-coding downstream 162589 5620046 ~ 5620854 (+)
G100975 NA other upstream 362944 5086760 ~ 5091748 (+)
atg4d atg4d other upstream 809336 4629123 ~ 4645356 (+)
G100820 akt3b,LOC108438606,LOC108259077,LOC107594289,LOC107729704,LOC107703832,LOC101071975 other upstream 1186866 4250083 ~ 4267826 (+)
LOC103022119 NA other upstream 1393943 4011995 ~ 4060749 (+)
LOC103023443 NA other upstream 2225326 3226739 ~ 3229366 (+)
G101452 NA other downstream 824568 6282025 ~ 6407811 (+)
mzt1 mzt1,si:dkey-15d12.2,LOC107556706 other downstream 842657 6300114 ~ 6302702 (+)
LOC103032856 march9,LOC108435943 other downstream 1497862 6955319 ~ 6997446 (+)
G101622 zc3h13 other downstream 1687345 7144802 ~ 7146340 (+)
LOC103042156 NA other downstream 1927300 7384757 ~ 7393225 (+)

Expression


Co-expression Network