Gene
RNA
| Item | Value |
|---|---|
| gene id | snrpb2 |
| gene name | snrpb2,LOC107684252,LOC107676294 |
| gene type | coding |
| species | mexican tetra (Astyanax mexicanus) |
| category of species | ornamental fish |
| Item | Value |
|---|---|
| chromosome id | NC_035908.1 |
| NCBI id | CM008311.1 |
| chromosome length | 31403898 |
| location | 5487462 ~ 5493881 (+) |
| genome version | Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome |
| symbol | description |
|---|---|
| snrpb2 | Predicted to enable U1 snRNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to be part of U1 snRNP. Human ortholog(s) of this gene implicated in connective tissue disease. Orthologous to human SNRPB2 (small nuclear ribonucleoprotein polypeptide B2). |
| description |
|---|
| U2 small nuclear ribonucleoprotein B'' |
| id | name | namespace |
|---|---|---|
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0019013 | viral nucleocapsid | cellular_component |
| GO:0017069 | snRNA binding | molecular_function |
| GO:0000166 | nucleotide binding | molecular_function |
| id | description |
|---|---|
| K11094 | SNRPB2; U2 small nuclear ribonucleoprotein B'' |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_007246639.2 | True | 1130 | mRNA | 0.46 | 7 | 5487462 | 5493881 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| rnaseh2a | rnaseh2a,LOC107747423 | coding | upstream | 1017 | 5477535 ~ 5486445 (+) |
| LOC103031288 | NA | coding | upstream | 30005 | 5454692 ~ 5457457 (+) |
| rad23a | rad23a | coding | upstream | 416320 | 5060535 ~ 5071142 (+) |
| LOC103026170 | NA | coding | upstream | 682915 | 4796254 ~ 4804547 (+) |
| LOC103042234 | meis1,LOC107757034 | coding | upstream | 700577 | 4730629 ~ 4786885 (+) |
| LOC103027484 | LOC108441199,LOC108258526 | coding | downstream | 24192 | 5518073 ~ 5527443 (+) |
| fbxo48 | fbxo48,LOC107684254 | coding | downstream | 93408 | 5587289 ~ 5590899 (+) |
| cenpk | cenpk | coding | downstream | 167935 | 5661816 ~ 5669700 (+) |
| LOC103029074 | NA | coding | downstream | 183705 | 5677586 ~ 5795428 (+) |
| LOC103029379 | kcnq5,LOC108441989,LOC100711684,LOC102297355,LOC103148493 | coding | downstream | 314557 | 5808438 ~ 6019959 (+) |
| G101207 | NA | non-coding | upstream | 21047 | 5465950 ~ 5466415 (+) |
| G101186 | NA | non-coding | upstream | 123115 | 5363866 ~ 5364347 (+) |
| G101167 | NA | non-coding | upstream | 203619 | 5279027 ~ 5283843 (+) |
| G101020 | NA | non-coding | upstream | 209971 | 5277264 ~ 5277491 (+) |
| G101007 | NA | non-coding | upstream | 310322 | 5173943 ~ 5177140 (+) |
| G101232 | NA | non-coding | downstream | 20502 | 5514383 ~ 5514689 (+) |
| G101245 | NA | non-coding | downstream | 51534 | 5545415 ~ 5546545 (+) |
| G101247 | NA | non-coding | downstream | 65976 | 5559857 ~ 5567450 (+) |
| LOC111193477 | NA | non-coding | downstream | 126165 | 5620046 ~ 5620854 (+) |
| G101272 | NA | non-coding | downstream | 131212 | 5625093 ~ 5627363 (+) |
| G100975 | NA | other | upstream | 395714 | 5086760 ~ 5091748 (+) |
| atg4d | atg4d | other | upstream | 842106 | 4629123 ~ 4645356 (+) |
| G100820 | akt3b,LOC108438606,LOC108259077,LOC107594289,LOC107729704,LOC107703832,LOC101071975 | other | upstream | 1219636 | 4250083 ~ 4267826 (+) |
| LOC103022119 | NA | other | upstream | 1426713 | 4011995 ~ 4060749 (+) |
| LOC103023443 | NA | other | upstream | 2258096 | 3226739 ~ 3229366 (+) |
| G101452 | NA | other | downstream | 788144 | 6282025 ~ 6407811 (+) |
| mzt1 | mzt1,si:dkey-15d12.2,LOC107556706 | other | downstream | 806233 | 6300114 ~ 6302702 (+) |
| LOC103032856 | march9,LOC108435943 | other | downstream | 1461438 | 6955319 ~ 6997446 (+) |
| G101622 | zc3h13 | other | downstream | 1650921 | 7144802 ~ 7146340 (+) |
| LOC103042156 | NA | other | downstream | 1890876 | 7384757 ~ 7393225 (+) |
