LOC103036567 (LOC108435966)


Basic Information

Item Value
gene id LOC103036567
gene name LOC108435966
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 6538347 ~ 6548346 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007246651.3
AGCTCCAGAACCCGCCGTGCTGGAAGGGGCAGTTTGGCCGCCGTGTTAAGAAACGCGTTtcactttttgtacatttttccgCTTAAAGCAGATCATTTAGGGCATCATGAGCGACAACGAGAAGGAGTATGTGGAGCGGGAGTCACGATCCAGAAGCCGGAGCCATAGAGTCTCTGCTAAATCCAACAGCGAGTCCCCGAGACGTTCCCCAGCGGGGTCTAAAGATGGGTCCCATCGTTCCAGATCTCACTCCAGGTCCAGATCTAGGTCCAGGTCCCGTTCCCGCCGGAGCACAAGGAGGCGCTACTCTCGTTCACACTCGCGCTCTCGTTCACGCTCCCACTCTCGCCGCCGCCACTCTCGCAGCCGATCCTACAGCCATGAGCATCGCCGCCACAGAAGCCACAGCCACTCTCCAATGTCCAACCGCAGACGGCATGTCGGCAATCGGGCGAATCCAGACCCTAACTGCTGCCTGGGTGTGTTTGGTCTGAGTCTTTATACCACAGAGAGAGATCTGAGAGAGGTGTTCTCTAAGTACGGTCCTCTGAGCAGCGTCAGCATCGTGTACGATCAGCAGTCACGCCGATCACGAGGCTTCGCTTTCGTCTACTTCGAGAACAGGGAGGACTCTAGGGAGGCTAAAGAGCGAGCTAATGGGATGGAGCTGGACGGGAGACGTATCAGAGTGGACTATTCCATCACTCAGAGGCCACACACCCCCACCCCGGGCATCTATATGGGACGACCCACATATGGGGGAGGAAGGCCGAGTGCGTCCGGAGGCCGCTCTAGAGATTATGATCGCGGTTACGATCGAGGATACGAACGCTATGATGACAGAGAATACTACAAATCTTACAGGCGCAGGTCTCAATCACCCTACTACAACCGCGGAGGGTACAGGTCACGCTCTCGGTCGCGGTCGTACTCCCCACGTCGATACTGAAGAATCGAgtagaaggatggatggatggatggatggatggatgatggatggatggatggatggatggatggatggatgga
>XM_022674623.1
AGCTCCAGAACCCGCCGTGCTGGAAGGGGCAGTTTGGCCGCCGTGTTAAGAAACGCGTTtcactttttgtacatttttccgCTTAAAGCAGATCATTTAGGGCATCATGAGCGACAACGAGAAGGAGTATGTGGAGCGGGAGTCACGATCCAGAAGCCGGAGCCATAGAGTCTCTGCTAAATCCAACAGCGAGTCCCCGAGACGTTCCCCAGCGGGGTCTAAAGATGGGTCCCATCGTTCCAGATCTCACTCCAGGTCCAGATCTAGGTCCAGGTCCCGTTCCCGCCGGAGCACAAGGAGGCGCTACTCTCGTTCACACTCGCGCTCTCGTTCACGCTCCCACTCTCGCCGCCGCCACTCTCGCAGCCGATCCTACAGCCATGAGCATCGCCGCCACAGAAGCCACAGCCACTCTCCAATGTCCAACCGCAGACGGCATGTCGGCAATCGGGCGAATCCAGACCCTAACTGCTGCCTGGGTGTGTTTGGTCTGAGTCTTTATACCACAGAGAGAGATCTGAGAGAGGTGTTCTCTAAGTACGGTCCTCTGAGCAGCGTCAGCATCGTGTACGATCAGCAGTCACGCCGATCACGAGGCTTCGCTTTCGTCTACTTCGAGAACAGGGAGGACTCTAGGGAGTATCATTCTTTCATAAACTGTTCTAATCAGGCTAAAGAGCGAGCTAATGGGATGGAGCTGGACGGGAGACGTATCAGAGTGGACTATTCCATCACTCAGAGGCCACACACCCCCACCCCGGGCATCTATATGGGACGACCCACATATGGGGGAGGAAGGCCGAGTGCGTCCGGAGGCCGCTCTAGAGATTATGATCGCGGTTACGATCGAGGATACGAACGCTATGATGACAGAGAATACTACAAATCTTACAGGCGCAGGTCTCAATCACCCTACTACAACCGCGGAGGGTACAGGTCACGCTCTCGGTCGCGGTCGTACTCCCCACGTCGATACTGAAGAATCGAgtagaaggatggatggatggatggatggatggatgatggatggatggatggatggatggatggatggatgga

Function

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K12897 TRA2; transformer-2 protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007246651.3 False 1029 mRNA 0.56 8 6538347 6548346
XM_022674623.1 True 1059 mRNA 0.55 8 6538347 6548346

Neighbor

gene id symbol gene type direction distance location
LOC103031597 ubac2 coding upstream 9034 6521314 ~ 6529313 (+)
LOC111193520 NA coding upstream 25089 6512464 ~ 6513258 (+)
LOC103025984 ubac2 coding upstream 36729 6484337 ~ 6501618 (+)
LOC103031289 dachc,LOC108435962,LOC108259061,LOC107732708,LOC107602747 coding upstream 75762 6351249 ~ 6462585 (+)
dis3 dis3 coding upstream 258236 6257549 ~ 6280111 (+)
igf2bp2 igf2bp2,LOC108435967,LOC105911772,LOC107749880,LOC107704342 coding downstream 5465 6553811 ~ 6633366 (+)
LOC103037816 cunh3orf70,LOC108435969,LOC107556711,LOC105912663,LOC102778299 coding downstream 143929 6692275 ~ 6733982 (+)
alg11 alg11,LOC107556718 coding downstream 628182 7176528 ~ 7183893 (+)
spp2 NA coding downstream 641978 7190324 ~ 7196997 (+)
LOC103040632 LOC108435946,LOC107747441,LOC107676094 coding downstream 724212 7272558 ~ 7281839 (+)
G101483 NA non-coding upstream 1445 6529751 ~ 6536902 (+)
G101485 NA non-coding upstream 4589 6532003 ~ 6533758 (+)
G101466 NA non-coding upstream 165050 6372757 ~ 6373297 (+)
G101455 NA non-coding upstream 190052 6338045 ~ 6348295 (+)
G101462 NA non-coding upstream 191214 6346557 ~ 6347133 (+)
G101490 NA non-coding downstream 30911 6579257 ~ 6627008 (+)
G101583 NA non-coding downstream 139939 6688285 ~ 6688632 (+)
G101610 NA non-coding downstream 449744 6998090 ~ 7013954 (+)
G101609 NA non-coding downstream 450740 6999086 ~ 7094070 (+)
G101626 NA non-coding downstream 546201 7094547 ~ 7120309 (+)
G101452 NA other upstream 130536 6282025 ~ 6407811 (+)
mzt1 mzt1,si:dkey-15d12.2,LOC107556706 other upstream 235645 6300114 ~ 6302702 (+)
G100975 NA other upstream 1446599 5086760 ~ 5091748 (+)
atg4d atg4d other upstream 1892991 4629123 ~ 4645356 (+)
G100820 akt3b,LOC108438606,LOC108259077,LOC107594289,LOC107729704,LOC107703832,LOC101071975 other upstream 2270521 4250083 ~ 4267826 (+)
LOC103032856 march9,LOC108435943 other downstream 406973 6955319 ~ 6997446 (+)
G101622 zc3h13 other downstream 596456 7144802 ~ 7146340 (+)
LOC103042156 NA other downstream 836411 7384757 ~ 7393225 (+)
G102015 NA other downstream 2166493 8714839 ~ 8719235 (+)
LOC103025691 NA other downstream 2249399 8797745 ~ 8836081 (+)

Expression


Co-expression Network