tpt1 (tpt1,LOC107691594,LOC107567988,LOC107598740,LOC107654875)


Basic Information

Item Value
gene id tpt1
gene name tpt1,LOC107691594,LOC107567988,LOC107598740,LOC107654875
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 7435630 ~ 7443495 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007246674.3
TGAGCGCGCATTGACGTCATCTGTTCTGGCAGTGTCTAGAGCTGATCTCGGTCTCTCGGCCTTTCCAGCTGAGTCCGCCGCCAGCGCAGCGCCTGCTCCGAGCCCTCCAACACAATCCATCAAAATGATCATCTACAAGGACATCATCACCGGAGACGAGATGTTCTCGGACATCTACAAAATCAAAGAGTCTGAGAATGGAATGATGATCGAAGTCGAGGGAAAGATGATCAGCAGAGCAGAGGGTGATATCGACGATGCGCTCATTGGTGGCAATGCGTCAGCAGAGGTCCAGGACGAAGGCTGCGACTCTACGACAGTCAGTGGTGTTGACATCGTCCTCAACCACAAACTCACTGAGACCAGCTACGACAAGAAGTCCTACACAGCTTACATCAAGGACTACATGAAGGCAGTGAAAGCCAAGCTGCAGGAAACATCTCCTGATCGGGTAGACCCCTTCATGGCTAACGCACCAGCTGAGGTCAAGAAAATCCTAGGAAACATCAAGAACTTCCAGtttttcACAGGAGAGTCCATGAACCCAGATGGCACTATTGGCCTCCTTGACTTCCGTGAGGATGGTGTGACGCCCTACATGCTCTTCTTCAAAGACGGTCTTGAGATTGAGAAATGcTAAATTCCCCTGCTGCATCCTAAAGTGCCTCCCCCCCATCAGTGGCCGTCATCAGCCCGGTGGCTGCGAGGGCTTGCGGATTAATTGGATCACCTCATTCCTCCCAACTTCATCAAAACCAGAAGCTCTTTTTAACCCCTCCCCCCAACCCCGACGAAGAGGATAttgatttctttgatttcagTGTCTGTCCATCCAGAAGACTTGAGACTTGCTCTGCTGTGAATCAATGTTTTTGGGGGGGAGAACAGTATTTTAGTGAGCTGAACCATCTTGCGAAGAGCTTGCGTTATTGCGCAGACGCAGCTCACTAGGgttttttggttttcattattatttttttaaaatacattagctACCACAATGGTGAAGTCGACTGCCTGGGCCTTGGTTTGCTGTGTGCATGTCAGCTCTCAGACAGCAAGTTGTACAGTTATTTGCCACATGTCCCTTCTCCAATCACAGGATTGAATAGGATTTCTTGGCACTATTtgtgacataaaaataaagttaagctGCTGGCTAAACAa

Function

symbol description
tpt1 Predicted to enable calcium ion binding activity. Predicted to be active in cytoplasm. Is expressed in brain; eye; lateral mesoderm; liver; and spinal cord. Orthologous to several human genes including TPT1 (tumor protein, translationally-controlled 1).

NR:

description
translationally-controlled tumor protein homolog

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007246674.3 True 1167 mRNA 0.48 6 7435630 7443495

Neighbor

gene id symbol gene type direction distance location
LOC103041253 NA coding upstream 90566 7338167 ~ 7345064 (+)
LOC103040938 rab3da,LOC103040938,LOC108435977,LOC108258507,LOC107757002,LOC107747429,LOC107675349,LOC107569532 coding upstream 116711 7294285 ~ 7318919 (+)
pld6 pld6,LOC107583251 coding upstream 146510 7285492 ~ 7289120 (+)
LOC103040632 LOC108435946,LOC107747441,LOC107676094 coding upstream 153791 7272558 ~ 7281839 (+)
spp2 NA coding upstream 238633 7190324 ~ 7196997 (+)
pibf1 pibf1 coding downstream 25848 7469343 ~ 7538634 (+)
LOC103044305 NA coding downstream 98845 7542340 ~ 7560927 (+)
LOC103034778 LOC108437774 coding downstream 265804 7709299 ~ 7770528 (+)
LOC103023156 NA coding downstream 1097499 8540994 ~ 8543564 (+)
LOC103024012 creb1a,LOC107757658,LOC107714305,LOC108437762,LOC107552236,LOC107691602 coding downstream 1206625 8650120 ~ 8664508 (+)
G101679 LOC107655627,LOC107559781,LOC108256914,LOC108437766,LOC105901645 non-coding upstream 53155 7378262 ~ 7382475 (+)
G101676 NA non-coding upstream 64233 7371071 ~ 7371397 (+)
G101674 NA non-coding upstream 66048 7369275 ~ 7369582 (+)
G101656 NA non-coding upstream 165487 7269806 ~ 7270143 (+)
G101636 NA non-coding upstream 260741 7174665 ~ 7174889 (+)
G101767 NA non-coding downstream 6418 7449913 ~ 7452365 (+)
G101776 NA non-coding downstream 52975 7496470 ~ 7498497 (+)
G101777 NA non-coding downstream 53936 7497431 ~ 7499837 (+)
G101778 NA non-coding downstream 59896 7503391 ~ 7628715 (+)
G101832 NA non-coding downstream 283662 7727157 ~ 7727563 (+)
LOC103042156 NA other upstream 42405 7384757 ~ 7393225 (+)
G101622 zc3h13 other upstream 289290 7144802 ~ 7146340 (+)
LOC103032856 march9,LOC108435943 other upstream 438184 6955319 ~ 6997446 (+)
G101452 NA other upstream 1027819 6282025 ~ 6407811 (+)
mzt1 mzt1,si:dkey-15d12.2,LOC107556706 other upstream 1132928 6300114 ~ 6302702 (+)
G102015 NA other downstream 1271344 8714839 ~ 8719235 (+)
LOC103025691 NA other downstream 1354250 8797745 ~ 8836081 (+)
trnar-ucu_1 NA other downstream 1390345 8833840 ~ 8833931 (+)
G102411 LOC107747660 other downstream 3082182 10525677 ~ 10526160 (+)
LOC111193528 NA other downstream 3425082 10868577 ~ 10870156 (+)

Expression


Co-expression Network