LOC103027484 (LOC108441199,LOC108258526)


Basic Information

Item Value
gene id LOC103027484
gene name LOC108441199,LOC108258526
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 5518073 ~ 5527443 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007246708.3
ATAAACCCTggttgagtgtttttttttctctcggtTGACTCCTGAAAGGGTCTGCGTGTTTCTCTGTGGAGCTGAGCTGCACTGATCAACTGCCGCTAGAGGGGGAAAACAAAAAGTATTTCATTCACATCTGGAGGAAGAGGAGCTCAGCGCGGGGATGCGCGCGTCGCACGAGCTCAGGGCGCATCTTCAGGAGAGATACTACTTTTATAAAAGAAGAGACTGGACAACAGAATTCAGATGGAATCAAATAAATAAGAAGAGAAGTAAGATTGAAGGAAGTTGGGAAAGAGCTTGACCCAGAACAGCGAGTAAGGGGTGAAGGATGGCGGAAAGAAACAAATCTGTCTTGGTGGTAACGTGGACACAAGGCCAGCCATTAGAGAGCCCTCAGAACCCTCTTGTGGCAAACTACGACATTCCTCTGGATTACGACGTTCCCCTAGACGAGATCCCGGACACGACTCAGGGCAGAGCCTTTTTCGTAGCCACCATCATCATCGCTGCGGTTCTGGTCAGCATCATGCTGGTCTGCGGGATTGGGAATTGCCTCTTCATCGCTACTTTAGCTCGGTACAAAAAACTGCGCAACATCACCAACCTGCTGATCGCTAACCTGGCAGTGTCGGATTTCCTGGTGGCGGTGGTGTGCTGCCCCTTCCTGGTGGATTACTACGTGGTTAAGCAGCTTTCCTGGGACCATGGGATCATCCTGTGCGTTTCCATCAACTACCTGAGGACAGTGTCTCTTTACGTGTCCACAAACGCCCTGCTGGCCATCGCTGTGGACAGGTACCTGGCCATTGTGCATCCCCTGAAGCCTCGGATGAAGTACCAGACCGCCTACTGGCTCATATTCGGGGTCTGGATCGTCCCCATCCTGATCTCCGTCCCCTCGGCATACTTCGCCACGGAACAGGAGTACCCTCATGGCTCCGTCTCCCACGACAACAAGATCTTCTGTGCCCAGATCTGGACCGCAGACCAGCAGCTGCTCTACCGCACCTATTTCTTGTTCGTTCTGGTCGTGGAGTTCCTGGTGCCAGTGGTGGTCATGGCAGTCTGCTACACCCGCATTTCGCTCGAATTGTGGTTCAAGAAAGTCCCAGGCTTTCCTACCGAGCAGCTCCAGCGGAGGCTGCGGCGACGACGCCAGACCGTCGTAGTCCTGATCGCAGTTCTGGTAGCCTATGTGATGTGCTGGGCGCCGTACTACGGCTTCGCCATCTTGCGGGACTTTTACCCCGCACTGATTACGCGGGAACGCAATTCGTTGGTGGCGTTCTACATCATCGAATGCATTGCCATGAGCAACGGGGTCATCAACACCCTGtgctttgtgagtgtaaagaacAATGCCGCCAAGTGTTTCAAGGGAATGAAACTTGCACAATGGCATGGCACCTCAAGGACTAACATTGCCATGTGCAAGATGGCGGATGAGGGTGACATGAGGACTTCCTCACTTAGAGTGACCGAACAAGTGTAATGTATGCGGTAGGGAAGGGCTTGAACAGAGGAATGTAGGAATGGCACCACAAGAACCAACTTTGGTAGTGCAAGATGGTAGGGCACCACAAGGACAATTGCTACTATGTGAAACATAGTGGATAAGGGTGACATTAGGACTTCCTCAGTAAAAGAGAGTGGAATAAACGTGAATAACATGAAGGAATTAAGTGCACTATGGCATGGCACCTCGAGGATCAATACTGGCATGTGCAAGATGGCAGACGAGGGTGATAAGAGAGAAATGTACATGAAGAAGGTGAAGGTATGGAAGGTTTGGTGCCATAGTAGAGTACCTCAAAGACCAACATTACCATCTGCAAAATGGCATAGGATCTCAAGGACCAACATTGGCATGGTGGCACATTGGCACAACTTCTTCTCTTAGAATTGTTGAACAAGTAGAATTAATGAGAATACGGTAAAGGAACTAAAGGATTTGTGCAGTGGCATGGCATCATAGGGACTAGCATGTGCAAGATGGCAGATGACGGTGACATGAGGACTTCCTCACTTATAGTGACCTAATAAGTGGAATGGATGTGAATAAGGCGAAGGTATGGAAGGCCTTGCACAGCGTAATGGTAACTTTAGGAGCAACATTGGCATGTGAAGGATGGCATGACACATCAAGAACCAACATTACTGCTGTGGTAAACCCCCTATAAAACCCC

Function

NR:

description
PREDICTED: prokineticin receptor 2-like

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007246708.3 True 2183 mRNA 0.50 3 5518073 5527443

Neighbor

gene id symbol gene type direction distance location
snrpb2 snrpb2,LOC107684252,LOC107676294 coding upstream 24192 5487462 ~ 5493881 (+)
rnaseh2a rnaseh2a,LOC107747423 coding upstream 31628 5477535 ~ 5486445 (+)
LOC103031288 NA coding upstream 60616 5454692 ~ 5457457 (+)
rad23a rad23a coding upstream 446931 5060535 ~ 5071142 (+)
LOC103026170 NA coding upstream 713526 4796254 ~ 4804547 (+)
fbxo48 fbxo48,LOC107684254 coding downstream 59846 5587289 ~ 5590899 (+)
cenpk cenpk coding downstream 134373 5661816 ~ 5669700 (+)
LOC103029074 NA coding downstream 150143 5677586 ~ 5795428 (+)
LOC103029379 kcnq5,LOC108441989,LOC100711684,LOC102297355,LOC103148493 coding downstream 280995 5808438 ~ 6019959 (+)
LOC103030021 LOC108441987,LOC108258654 coding downstream 523407 6050850 ~ 6101321 (+)
G101232 NA non-coding upstream 3384 5514383 ~ 5514689 (+)
G101207 NA non-coding upstream 51658 5465950 ~ 5466415 (+)
G101186 NA non-coding upstream 153726 5363866 ~ 5364347 (+)
G101167 NA non-coding upstream 234230 5279027 ~ 5283843 (+)
G101020 NA non-coding upstream 240582 5277264 ~ 5277491 (+)
G101245 NA non-coding downstream 17972 5545415 ~ 5546545 (+)
G101247 NA non-coding downstream 32414 5559857 ~ 5567450 (+)
LOC111193477 NA non-coding downstream 92603 5620046 ~ 5620854 (+)
G101272 NA non-coding downstream 97650 5625093 ~ 5627363 (+)
G101306 NA non-coding downstream 224406 5751849 ~ 5754338 (+)
G100975 NA other upstream 426325 5086760 ~ 5091748 (+)
atg4d atg4d other upstream 872717 4629123 ~ 4645356 (+)
G100820 akt3b,LOC108438606,LOC108259077,LOC107594289,LOC107729704,LOC107703832,LOC101071975 other upstream 1250247 4250083 ~ 4267826 (+)
LOC103022119 NA other upstream 1457324 4011995 ~ 4060749 (+)
LOC103023443 NA other upstream 2288707 3226739 ~ 3229366 (+)
G101452 NA other downstream 754582 6282025 ~ 6407811 (+)
mzt1 mzt1,si:dkey-15d12.2,LOC107556706 other downstream 772671 6300114 ~ 6302702 (+)
LOC103032856 march9,LOC108435943 other downstream 1427876 6955319 ~ 6997446 (+)
G101622 zc3h13 other downstream 1617359 7144802 ~ 7146340 (+)
LOC103042156 NA other downstream 1857314 7384757 ~ 7393225 (+)

Expression


Co-expression Network