LOC103028459 (LOC108428195,LOC108258943,LOC107566531,LOC107710590)


Basic Information

Item Value
gene id LOC103028459
gene name LOC108428195,LOC108258943,LOC107566531,LOC107710590
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 12818186 ~ 12833144 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007251358.3
cgctctttcttcttctcctttttaaCTCATAACAAGCACAAACACTGGAGCAGGTGGATCTTGCCAGCTTTAAAATGTGACTACTAAACCTTCCACCTTCCATTCTTGATACTCCACCTTcactgtacctactgtacctcCATTGCCCTCAAAACCAGCTGTCACCATTCTACATATCTGAAACATGGAGGTTTTCTCCAGAATAAGCGAAGGCAACCCTGTTTTGAACCTCTCACGTCTACAGCTGCACGGCCTGGACCTGGACCACGTTGGAGAGGCCCAGAAGAAGCAAATACAGCAGGTTTACCTCACTTACAACAGCCTGACACTGTTCCCCACCTCTGTCTGCCTCCTCTCCAACCTGGAGCACCTGGATCTGAGCAACAACTCCCTCAAACTTGTGCCCGACGAAATCACAAGGTTAACCAGCCTAAAAACTCTGGTGGCCAAAAACAATCATCTGGATGAAACTTCCTTCCCCAAACACTTTGGGTCAATGCAGATTGAAAGCCTGAACATGGGCGGGAACCGATTCAGGGAGATACCCGTGCAGTTCCTGAAGCTCAGCAAGCTGCAGTCTCTGTCACTTGGTGGGAATAGATTAAAGAGCATCCCTGCGGAGATAGGAAAGCTGAGCAGGTTGGAGATGCTGTATCTGGGTGGGAATATGATCTCTTGTATCCCTCCTGAACTGGCCAATCTGAGCTGCCTCAGATACCTGGTACTGTGTGACAACTGCATCCAGAGCATCCCCCCTCAGCTCAACAGACTCCACGCCTTGCTATCTCTTAGTCTTCATAACAACCTCCTGACATTCCTTCCCCGGGAGATCCTCAGCCTGGTCCACCTGCAGGAGCTCAGTCTTCGAGGCAACCCACTAGTGGTACGTTTTATTAAGGACATGACTTACGACCCTCCGTCTCTGCTGGAACTAGCTGGTCGGACCATCAAATCCCATAACCTCCCGTACCTTCCAAGAGACCTGCCGGCCAACCTGTGCTCCTATCTTGATATGGCCAGCAAGTGCCCCAACCCCAAATGTGCAGGAGTGTATTTCGACTCGTGTGTCCGGCACATCAAGTTTGTGGACTTCTGCGGCAAGTTCCGCCTGCCCCTCATGCACTACCTCTGTTCTCCAGAATGCAGCTCTCCCTGCAGCTCCAACCCACAAAGTGACGCAGAGTCAGAAGACGAGATCAGCGTACCTGTGGACAGACTGCAGAGAGTGCTTCTGGGATAGCAAGATCCTCCAGAGATGGAGGAGAACTGTTTTAtacatgtacattttatttgtgtatCAGAAAGATACatacactgacgatttttggcaaaattaaaggattttaagtgcaccttatagtgcgaaaaatatcataaaaggATCATTTGCATAAGTAATTATGCATTaggcagttagctagctaacctagttagttAACTAAAAGTCAAAAGTTGAACCTCATAACCTTTAAAATGAACTACTGTTCGATGATgcattagctaagctagctaattaaCTGGTTATCTAGGAAGTTGGTAAAATGGTTACATTTAAACCTACAACGGAAAAACAAACttcattagctagctagctatttagctaactggttagctagttaagcAAGGGTCAGCTAAGAactacagtactagtcaaaataaacaattatcaacaaaaaagaaataaactctagatctgaattactgaaataaagtaatttttcaatgatattctattttttgagatgcactagtaattaCTAAAGTATTATTTAGCTAGCtttgattaaaaagtaaacataAAGTACCACAACGGATTCTCAAAGtatctaattaaataaatatttagttaCCAAAGATCAGCtacaactacaaaaaaacagtaggGTAAATACTGTAAACGCTTCATCAATGCTAACTATAATCACCAACTTAGCTAAATAATAAGCTTTGCCTGCTAAGCACTAAAATAGAACTAAACAGCTATATGATAATTTAGTCCTGTGCAGCTAAGAACTGgacatatgtacagtatattcagaCCACATTTTTGGCAACCCGTGAAACTCTGTAAAAGGGTCACAGACGCTGTTGAATCACTATAGAACTGTCTACCAGGGATATAGGAATGTTCATGGGGGAGAAAAAGCACAAACATTGACGCTTCTACTATGAACTGCTGAAACGACAGCACAAACTTCCCAGTACTACCTCTGAGTTACGCACAGTGTGTTTTGGCAGGGGACGTTATTCTTGGAAAGTGCCATGCAGGTTTTGGTTGGTACTTTTGGAGACTCTTCTTTTCTGTATTGagtctttttatgttttaaagtaCAATAGACAGACAAAAGTATTAAGACACCCACACATTATACTGTACCTACAGGACCAATGTGGAATCGGCCCCCCCTTTGCAGAAGGTTTGTAacattttgagttattgagtcAGAATAGTGTTGGAGACTTTTATGCACTATGTATTTTAGGACATGCACTGCTATGTAACTTTCATACTGATCTGCATGCTCCATTTCATTATAGTATAACATTCGAATAAAGCTTTTTAGATCCACCTATCCACCCACTGCATAGCTATGTGCagtttatacacctgtggcctgTATTAAACACCTGAATTAAATCATTAA

Function

NR:

description
PREDICTED: leucine-rich repeat-containing protein 58-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007251358.3 True 2645 mRNA 0.42 4 12818186 12833144

Neighbor

gene id symbol gene type direction distance location
LOC103028151 fstl1,LOC103028151,LOC108428196,LOC108258944,LOC106575075,LOC105019681 coding upstream 2525 12785758 ~ 12815661 (+)
LOC103027506 gja8,LOC108258942,LOC107603011,LOC107566539,LOC107746070 coding upstream 51016 12762266 ~ 12767170 (+)
bcl9 bcl9,LOC107676875,LOC107746055,LOC107746285 coding upstream 84989 12568579 ~ 12733197 (+)
LOC103025394 NA coding upstream 257075 12546334 ~ 12561111 (+)
cbr1 cbr1,LOC108428204,LOC107746284,LOC107692178 coding upstream 278620 12535280 ~ 12539566 (+)
stn1 obfc1 coding downstream 4015 12837159 ~ 12846645 (+)
cfap58 NA coding downstream 392157 13225301 ~ 13429937 (+)
LOC103043054 NA coding downstream 746983 13580127 ~ 13590984 (+)
LOC103024001 LOC108439370,LOC108258974,LOC107758869,LOC107590749 coding downstream 797473 13630617 ~ 13665746 (+)
LOC103023667 LOC108439371 coding downstream 840154 13673298 ~ 13676357 (+)
G103086 NA non-coding upstream 697 12817258 ~ 12817489 (+)
G103067 NA non-coding upstream 34883 12767216 ~ 12783303 (+)
LOC111193478 NA non-coding upstream 35128 12781599 ~ 12783058 (+)
G103068 NA non-coding upstream 35882 12775254 ~ 12782304 (+)
G103023 NA non-coding upstream 78018 12626199 ~ 12740168 (+)
G103102 NA non-coding downstream 185704 13018848 ~ 13019168 (+)
G103130 NA non-coding downstream 201087 13034231 ~ 13034919 (+)
G103133 neurl1,neurl1aa,LOC107676877 non-coding downstream 207496 13040640 ~ 13045883 (+)
G103163 NA non-coding downstream 379253 13212397 ~ 13214646 (+)
G103169 NA non-coding downstream 392337 13225481 ~ 13225718 (+)
cryzl1 cryzl1 other upstream 295883 12483622 ~ 12522303 (+)
cab39l cab39l,LOC107676861,LOC107718429 other upstream 793422 12000639 ~ 12024764 (+)
map2k7 map2k7,LOC107676852,LOC107712243 other upstream 1523371 11274746 ~ 11294815 (+)
LOC111193528 NA other upstream 1948030 10868577 ~ 10870156 (+)
G102411 LOC107747660 other upstream 2292026 10525677 ~ 10526160 (+)
sh3pxd2a sh3pxd2a other downstream 17857 12851001 ~ 13032506 (+)
G103376 zgc:77880,LOC108439367,LOC107692630,LOC107723165,LOC103363053,LOC107758853,LOC105904859,LOC107590776 other downstream 1095921 13929065 ~ 13935667 (+)
G103490 LOC106510829 other downstream 1427481 14260625 ~ 14261539 (+)
G103551 NA other downstream 1785491 14618635 ~ 14619082 (+)
G103561 NA other downstream 1857899 14691043 ~ 14692199 (+)

Expression


Co-expression Network