stn1 (obfc1)


Basic Information

Item Value
gene id stn1
gene name obfc1
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 12837159 ~ 12846645 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007251363.3
AGTAGTGTTACTCGCAGTGTGAGTGAGCGCTGATGAAGAACAGGCGCGGGGTGTTTGGCTGAAACTCTGCAGGGCTAAAAgctgttagtttagtttattaagtAATTCTAAACAGAAGGAGAAAATACTAACTGTATTCACCAGTGTGATTTTTACATAATACAGATGCAGATCTTTTGCTGCCTCTTGTTTGAGTGAAGGTTACAGGCTTGACCTGTTGGAATGAATGCACCATGGCCAGTGATCAAGGTGGCAGTGAAGATGAACCTCCATCACTGTTATGGGGACAGGACCCTGTGTTTTCAGCCTATGCCAGGCTCTATGTTAAAGACATTCTACAAATGAAAGAGTCTCTACAAGTTCCAGGAATCTACTTTTATAAAAATCACCCTCTGTTCCAAGTGGGCGTGCTGGGCACTGTGGTATACAGGCGGGAGAGAGAGGACTTTTACTGCTATGGAGTGGATGACAGTACTGGAGTCATCAACTGCCTGTGCTGGAAAGATGAGAAATGGAGGGACGATGGAGACTCGGTAAAGCGAGGAGGCTCTGGTGGAGTGTTTAATGTGGAGGAGCAGTTGAGGAAACTCAGAGAGACTCAGAGGAGCAGCTGTATGCTGGAAATAGGAGACTTGCTCAGAGTGCGTGGCTCCCTCAAAACCTCCCGGGAGCAGAGGGAGATCATGGCCTCCTCCTTTTATAAAGTGAGTGATCCGGTGATGGATGTGCAGATTGCCCGGATGCTGGAGATACCTCAGCTCTACAGGGACTGCTACGACAAGCCCTTCCAGGCACTGGGCAGTGAGGTTGAAGCAAGCACCACTGAtGCTGGTGGGCACCCAAATTTCCAGTCCTTGCTCGGTCAGTCAGTTCGCATCCTGAAGAAATTCCTGAAAGAGAAGGAAGTGGCCAAGTTTCGACCGTACGACGTTGAATATCTCTTACACCCACTGATCCAGTGGCCACCCCGGAACACAGCATCAGGGCAGgaGGTGACTTCTGCTGGACCATCGTTTTCCACACAGGTCAAGAACCTTCTCAAAGAAACACTGAAGATTCTGCAGAGTGAGGGGGAGATATTTCGCAAAGTCCTCTCCCCAGACGAGCTTTACAATGTGACTGAACAAGATAAAGACCTGTTGGCGGCAATACGAGATATGATAAGAGAAGATTCCAAAAGAGAGAAATATGCTGAGAAGGGTTGCCATGTCCTGCACATATTGTCCAGCGTCAGGCAGAAATACAGTCGCAATCTCAGCAGAGAAGCCTTGGAGGTCGCCCTCAAGTTTTTAGAATGTAACAGTGATATTATCAGTACCATGGACTCCCATTATACAGTTCTGTAGCGATGGAGCTGGAAACGCATGTGCCTGTGGACACTCAAGACAACTTTTGGCTGCTTTTTGGAGCCAGTTTTCAGGTTTCTCAGAGCAGATGGGTAGAAGTTTAAGCACTTTCATTGTTGACAGACAATGGACAGATTTCTGCTTTGCGGTTTTTACCTAGACACTGACTGTGCtatcttctttctttctgttttcaaATGGCATCTGTTGGTTTACTGTGATCTTACTTCCATAGTTGTCCCAAATGGGGCTTGATGAAAATTTTACAGTTACGTCTCATTTGTGCTTTTTAAAAACGTGCCTTCTGTTTTGCCTTTTGTTTATTGATTCAGTCTGTTTTTCTGAAGTTAATCAAGGCCTAGACTATGTTGTACATAGTCATTGCATTGTTTATAATTTTGTAACAAAAAGAGTCGAACATTTTTTCAATGTtgagaaattaagagaccattgaATGTAATTTCATTAAGACTTCATTTGTGACCCTACAAACCCCAACACGCACTTAAGCtctctggctttttttttattttacatgttttcttAACCCTTATAGACCCTGTCTCCATTACAAAGGACATAATgtacttctttttttatgtttttcatgaattatccaaataaaaaagttttcaagccattaaaA

Function

NR:

description
CST complex subunit STN1-like

GO:

id name namespace
GO:0010833 telomere maintenance via telomere lengthening biological_process
GO:0043047 single-stranded telomeric DNA binding molecular_function

KEGG:

id description
K23312 STN1; CST complex subunit STN1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007251363.3 True 1992 mRNA 0.44 10 12837159 12846645

Neighbor

gene id symbol gene type direction distance location
LOC103028459 LOC108428195,LOC108258943,LOC107566531,LOC107710590 coding upstream 4015 12818186 ~ 12833144 (+)
LOC103028151 fstl1,LOC103028151,LOC108428196,LOC108258944,LOC106575075,LOC105019681 coding upstream 21498 12785758 ~ 12815661 (+)
LOC103027506 gja8,LOC108258942,LOC107603011,LOC107566539,LOC107746070 coding upstream 69989 12762266 ~ 12767170 (+)
bcl9 bcl9,LOC107676875,LOC107746055,LOC107746285 coding upstream 103962 12568579 ~ 12733197 (+)
LOC103025394 NA coding upstream 276048 12546334 ~ 12561111 (+)
cfap58 NA coding downstream 378656 13225301 ~ 13429937 (+)
LOC103043054 NA coding downstream 733482 13580127 ~ 13590984 (+)
LOC103024001 LOC108439370,LOC108258974,LOC107758869,LOC107590749 coding downstream 783972 13630617 ~ 13665746 (+)
LOC103023667 LOC108439371 coding downstream 826653 13673298 ~ 13676357 (+)
LOC103023349 LOC108439383,LOC108258976 coding downstream 829799 13676444 ~ 13680221 (+)
G103086 NA non-coding upstream 19670 12817258 ~ 12817489 (+)
G103067 NA non-coding upstream 53856 12767216 ~ 12783303 (+)
LOC111193478 NA non-coding upstream 54101 12781599 ~ 12783058 (+)
G103068 NA non-coding upstream 54855 12775254 ~ 12782304 (+)
G103025 NA non-coding upstream 160641 12654601 ~ 12676518 (+)
G103102 NA non-coding downstream 172203 13018848 ~ 13019168 (+)
G103130 NA non-coding downstream 187586 13034231 ~ 13034919 (+)
G103133 neurl1,neurl1aa,LOC107676877 non-coding downstream 193995 13040640 ~ 13045883 (+)
G103163 NA non-coding downstream 365752 13212397 ~ 13214646 (+)
G103169 NA non-coding downstream 378836 13225481 ~ 13225718 (+)
cryzl1 cryzl1 other upstream 314856 12483622 ~ 12522303 (+)
cab39l cab39l,LOC107676861,LOC107718429 other upstream 812395 12000639 ~ 12024764 (+)
map2k7 map2k7,LOC107676852,LOC107712243 other upstream 1542344 11274746 ~ 11294815 (+)
LOC111193528 NA other upstream 1967003 10868577 ~ 10870156 (+)
G102411 LOC107747660 other upstream 2310999 10525677 ~ 10526160 (+)
sh3pxd2a sh3pxd2a other downstream 4356 12851001 ~ 13032506 (+)
G103376 zgc:77880,LOC108439367,LOC107692630,LOC107723165,LOC103363053,LOC107758853,LOC105904859,LOC107590776 other downstream 1082420 13929065 ~ 13935667 (+)
G103490 LOC106510829 other downstream 1413980 14260625 ~ 14261539 (+)
G103551 NA other downstream 1771990 14618635 ~ 14619082 (+)
G103561 NA other downstream 1844398 14691043 ~ 14692199 (+)

Expression


Co-expression Network