lipt1


Basic Information

Item Value
gene id lipt1
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 11373667 ~ 11375319 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007253114.3
TAGCGCAAcccgacagaacaccggatctGATCTCACCACAACGCATGTGCTGACACCggatacaaaaaaaacccttaGGACTCTTAGCGTAGCATGGGAACTTAGGACAGAATGAGGTGAagttattgatttttaaacgctgaatatttcaaacaaacagagaaaaggCTTAAATATAGGACTACAATGGCTCTGAGGACTTTTTCGAGAGAGTCAATGAGGAGGCTAACGTTGCTTCCATCTAACTTGCCTTTTCTGCTGATTCCCAGGCTTAGCTCTACTTTAAAAACatatcttgaggatttctgCAAACCAGGGGTCATTCTCAAGTCTCCCTCTACTGACATTTTCCAAAACCTGGCTCTGGAGGACTGGATACACCAGCATATTGATGTACAGACTCGAAGAGTGCTGCTTCTGTGGAGAAATGATTCAGCTGTGGTTATTGGTAGGCACCAAAACCCTTGGCAGGAGTGCAACCTGCCCATGATGAGAAAACTTGGGATACCACTGGCTCGACGTAGAAGTGGTGGTGGGACTGTTTATCATGATTTGGGCAACATAAACCTGACTTTCTTTACATCCAAGAAGAACTATGACCGCCGCAGGAACTTAGGGGTTGTTACTGGTGCTCTGAAGGACTTGAGGCCAGATCTGGATGTCGTTGCCACAGATAGATTCGACATTGTCCTAAATGGTGATTATAAAATCTCAGGAACTGCTGCAAAGTTGGGCAGGACAGCTGCATACCATCACTGCACTCTATTGTGCTCCTCCAACAGGCCCCTGCTTTCCTTGGTGCTCCAGAGCAACTGCAAAGGCATCAAAAGCAATGCCACCCCTAGTGTACCATCCCCTGTCAAAAACCTCATGGATGAAGATCCGTCTTTGGAGGCCACTGACATCATGGAAGCCATTGCCTCTCGCTACAATGCAGAATTTGGCTTTGATGGCCCCATCATAACCGTGGATCCCAGTGTGGAGGACCTGATGCCTGGCATTCATGACATGGCAGCTGAACTAAAGACCTGGGAGTGGGTTTACGGCAGGACACCCAAGTTCAGCATCTGCACATCTTTCACAGTCGAAGGTGCAAATGTTGCACTGGATATGGACATCAAGAATGGTGTGGTAGAAAAGTGTGCCATGGACGTACCCCAACAATGGCTGCTCCCAGAGGTTGGGCAGCAGCTTGGCTCAGCACTCACCGGTGTCCGGTTCTGTCCAAGTGAGGCTGCGGCAGTTGTGGCCGCCCTCATGAGGACGAGCTCGCAAGATCCTGACCTTGCAAGAAAGACTCGCCGTCTGTATGAAAGTGTTGTGGCAGTAATATGAATAAAGCTTTTATATCTGTTCATCTTTTGTGATGTTGGTTTAATTGATGTTGATTGTATTGTCAAAATACTGTTAAGGTCTATAGTGAGTGTAAATCTGTGGCTAAGAAGCAcattgtaattatttaattattattatgtaattatttgtaaaatacaTGTCCaattattaatactgaattcatgttttcacttactttttctagcctgcactgtGGATTTTTTCTGATTGTGGTCAATAAAAGACATGCACAGTACAGCTTAGTTAGAGAATAGAACCTGAGAATAGAAGGTAGCAAGTATGGTGGGACAATATGGT

Function

NR:

description
PREDICTED: lipoyltransferase 1, mitochondrial-like

GO:

id name namespace
GO:0009249 protein lipoylation biological_process
GO:0016740 transferase activity molecular_function

KEGG:

id description
K10105 LIPT1; lipoyltransferase 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007253114.3 True 1653 mRNA 0.45 1 11373667 11375319

Neighbor

gene id symbol gene type direction distance location
pkn1 LOC108428230,LOC107603033,LOC107712223,LOC107561874,LOC107676851 coding upstream 100664 11197689 ~ 11273003 (+)
LOC103038803 prr36,LOC107382350,LOC103150089,LOC106941305,LOC106515293 coding upstream 187830 11151317 ~ 11185837 (+)
LOC103039116 mcoln1,LOC108428233,LOC107561871,LOC107676888,LOC107603030,LOC107718592,LOC106588379 coding upstream 230841 11119383 ~ 11142826 (+)
trappc5 trappc5,LOC107692146,LOC107712234,LOC107676838 coding upstream 257741 11112593 ~ 11115926 (+)
LOC103040348 NA coding upstream 337237 11027552 ~ 11036430 (+)
eif5b eif5b coding downstream 1170 11376489 ~ 11400006 (+)
LOC103036596 arhgef7,arhgef7b,LOC107718510,LOC107567796,LOC107746262 coding downstream 28925 11404244 ~ 11450384 (+)
LOC103035965 sox1 coding downstream 256414 11631733 ~ 11633775 (+)
LOC111193615 mcf2l coding downstream 611600 11986919 ~ 11996727 (+)
arl11 NA coding downstream 680791 12056110 ~ 12058454 (+)
G102633 atp5h,LOC103037520,LOC102207628,LOC103369154 non-coding upstream 842 11368038 ~ 11372825 (+)
G102620 NA non-coding upstream 57877 11310627 ~ 11315790 (+)
LOC111193530 NA non-coding upstream 63982 11307142 ~ 11309685 (+)
G102621 NA non-coding upstream 72700 11299454 ~ 11300967 (+)
G102618 NA non-coding upstream 112630 11259422 ~ 11261037 (+)
G102638 NA non-coding downstream 68944 11444263 ~ 11444514 (+)
G102648 NA non-coding downstream 145351 11520670 ~ 11520911 (+)
G102652 NA non-coding downstream 184091 11559410 ~ 11559897 (+)
LOC111193531 NA non-coding downstream 214804 11590123 ~ 11672512 (+)
G102654 NA non-coding downstream 223744 11599063 ~ 11599504 (+)
map2k7 map2k7,LOC107676852,LOC107712243 other upstream 78852 11274746 ~ 11294815 (+)
LOC111193528 NA other upstream 503511 10868577 ~ 10870156 (+)
G102411 LOC107747660 other upstream 847507 10525677 ~ 10526160 (+)
LOC103025691 NA other upstream 2537586 8797745 ~ 8836081 (+)
trnar-ucu_1 NA other upstream 2539736 8833840 ~ 8833931 (+)
cab39l cab39l,LOC107676861,LOC107718429 other downstream 625320 12000639 ~ 12024764 (+)
cryzl1 cryzl1 other downstream 1108303 12483622 ~ 12522303 (+)
sh3pxd2a sh3pxd2a other downstream 1475682 12851001 ~ 13032506 (+)
G103376 zgc:77880,LOC108439367,LOC107692630,LOC107723165,LOC103363053,LOC107758853,LOC105904859,LOC107590776 other downstream 2553746 13929065 ~ 13935667 (+)
G103490 LOC106510829 other downstream 2885306 14260625 ~ 14261539 (+)

Expression


Co-expression Network