sugt1 (sugt1,LOC104941757)


Basic Information

Item Value
gene id sugt1
gene name sugt1,LOC104941757
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 18860729 ~ 18895531 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007254805.3
TCTCCACAGTTGGGAGTTTGACAGTCCTGATGTTTACATGGCGCTAAGCAGCAGCGAGGAGGGCCTTTCGGTTTCACTCAGAACTTTCTAGACCTTCTTCTTCACCCACGAGAACGGCGGACTCATGGCCAGCGACAGGAGTTTTACTGACAGTTTCATAGACGAGGACCCGAAGCGAGCTCTGCAGGAGCTGAATGTGGCTTTGGGAGATACAGCTGACAATGCAGAATGGCTCTGTCAGCGATCTTATGCACACATTCTGGTCCAGGACTATAACAgAGCAGTCGATGATGCTAAGAAAGCACAGCAGCTTCAGCCTGGTATGGCCACTGCCTTCCTGAGAAAAGGAATCGCAGAATATCATCTCAACAACATCAGTGAGGCTCAGCAGACCTTTACAGCAGGAAAGGCACTTGATGATTCCAATGAGGCTTTTGTAACGTGGATGAAGCTCTGCGAAGAGAAAATGACACAAAGACAAAATGGAACCGCAACTTCGCAGCAAACTGCAGCAGCTCCACATGTCAAACATGACTGGTACCAGACAGAATCGCAAGTCACTGTCACCATCATGGTGAAGAATGCCAAGAAGGAGGATGTTGCTGTCACCTTTGGAGAAAAAGAGTTGAGAGCGGAAATGAAGCTTCCATCTGGAGAGGATTACTGCCTACATATCCACCTTCTACACCCTGTGGTTCCTGAGCAGAGCACTTTAAAGATCCTCTCCACTAAGgtcGAGATTAAGATGAAGAAGACGGAAGCAATCCGGTGGGAGAAGCTGGAGGGGGAAGGCACCCTACCCAGCGTCAAGCACTTCGCTCCCTCCCCGAACCAGTACCCATCATCCTCCCACTATACCCGCAACTGGGACAAGTTGGTGGGCGATATtaaggaggaagagaagagcGAGAAGCAGGAGGGAGATGCCGCACTGAACTCGCTGTTCCAGCAGATCTACTCAGATGGCTCTGATGAGGTCAAGAGGGCCATGAACAAGTCTTTCATGGAATCTGGAGGCACAGTTCTCAGCACCAACTGGTTAGATGTTGGCAAACGGAAAGTAGACGTGAATCCTCCAGATGACATGGAGTGGAAGCAATATTAATTGGACGGTGAATTCGACGTTGAGTGCTGCGCCAGTCTTCACCACATTGGCCCTGACCTTTCCTCcattctttcttgttttctttctttttttttatatttggccAGTCTCTTGGACCCACATGTAATGTTGGAATAACAACTCAGTTTAAGTAGGTTTCAGTTTCCATTGGCAATTGTTTGTTGTTCATAATTAGGTTTTCCGTGTCAAAGAGTCCATTTTAAATGGAAAGTTCCCACAAGCCACTGGACCTAGACTTCTCTTCATCTGTGTCTGGGAACCTGCCCATTAATGTTTTAGAAACACCACACATGCTCTTTTTCTCGTATTGTTTTGGCATGTTTCAACACTTAAAGTGTGGGTGCTGGCTGAATAAATTGTCAACATTTTGAACATCTCTCtcctacacaaaaaaaaataatcttggGTCATTATTCAAAATTTTGTTCAGTGATCAAGAGCCACAACATTACTCGTTTTCACTTTTCAAGCACTTGTGCCTCAAGATATATTTAGCCATTTTTATGATGTACTTAAAGGGGTCATGCTTTACTGAATACAATTACAGacacattgtaaataaattttTCTTGCTCAAAGtgactttcctatttttttccgTATTCATGGTGATTTAGGACAGAAACATCTTCCACAGGTATTTTCTTTGAAAAGCTGGGCATGAGTGATGCAAggcttaaagtggcagtccgtattattttgtttctaaactgaaagtaaaagatgTTTTTCTGAGTAGAGAAGGaataaaaaactgtgtttaatggta
>XM_015607258.2
TTCTCCACAGTTGGGAGTTTGACAGTCCTGATGTTTACATGGCGCTAAGCAGCAGCGAGGAGGGCCTTTCGGTTTCACTCAGAACTTTCTAGACCTTCTTCTTCACCCACGAGAACGGCGGACTCATGGCCAGCGACAGGAGTTTTACTGACAGTTTCATAGACGAGGACCCGAAGCGAGCTCTGCAGGAGCTGAATGTGGCTTTGGGAGATACAGCTGACAATGCAGAATGGCTCTGTCAGCGATCTTATGCACACATTCTGGTCCAGGACTATAACAgAGCAGTCGATGATGCTAAGAAAGCACAGCAGCTTCAGCCTGGTATGGCCACTGCCTTCCTGAGAAAAGGAATCGCAGAATATCATCTCAACAACATCAGTGAGGCTCAGCAGACCTTTACAGCAGGAAAGGCACTTGATGATTCCAATGAGGCTTTTGTAACGTGGATGAAGCTCTGCGAAGAGAAAATGACACAAAGACAAAATGGAACCGCAACTTCGCAAACTGCAGCAGCTCCACATGTCAAACATGACTGGTACCAGACAGAATCGCAAGTCACTGTCACCATCATGGTGAAGAATGCCAAGAAGGAGGATGTTGCTGTCACCTTTGGAGAAAAAGAGTTGAGAGCGGAAATGAAGCTTCCATCTGGAGAGGATTACTGCCTACATATCCACCTTCTACACCCTGTGGTTCCTGAGCAGAGCACTTTAAAGATCCTCTCCACTAAGgtcGAGATTAAGATGAAGAAGACGGAAGCAATCCGGTGGGAGAAGCTGGAGGGGGAAGGCACCCTACCCAGCGTCAAGCACTTCGCTCCCTCCCCGAACCAGTACCCATCATCCTCCCACTATACCCGCAACTGGGACAAGTTGGTGGGCGATATtaaggaggaagagaagagcGAGAAGCAGGAGGGAGATGCCGCACTGAACTCGCTGTTCCAGCAGATCTACTCAGATGGCTCTGATGAGGTCAAGAGGGCCATGAACAAGTCTTTCATGGAATCTGGAGGCACAGTTCTCAGCACCAACTGGTTAGATGTTGGCAAACGGAAAGTAGACGTGAATCCTCCAGATGACATGGAGTGGAAGCAATATTAATTGGACGGTGAATTCGACGTTGAGTGCTGCGCCAGTCTTCACCACATTGGCCCTGACCTTTCCTCcattctttcttgttttctttctttttttttatatttggccAGTCTCTTGGACCCACATGTAATGTTGGAATAACAACTCAGTTTAAGTAGGTTTCAGTTTCCATTGGCAATTGTTTGTTGTTCATAATTAGGTTTTCCGTGTCAAAGAGTCCATTTTAAATGGAAAGTTCCCACAAGCCACTGGACCTAGACTTCTCTTCATCTGTGTCTGGGAACCTGCCCATTAATGTTTTAGAAACACCACACATGCTCTTTTTCTCGTATTGTTTTGGCATGTTTCAACACTTAAAGTGTGGGTGCTGGCTGAATAAATTGTCAACATTTTGAACATCTCTCtcctacacaaaaaaaaataatcttggGTCATTATTCAAAATTTTGTTCAGTGATCAAGAGCCACAACATTACTCGTTTTCACTTTTCAAGCACTTGTGCCTCAAGATATATTTAGCCATTTTTATGATGTACTTAAAGGGGTCATGCTTTACTGAATACAATTACAGacacattgtaaataaattttTCTTGCTCAAAGtgactttcctatttttttccgTATTCATGGTGATTTAGGACAGAAACATCTTCCACAGGTATTTTCTTTGAAAAGCTGGGCATGAGTGATGCAAggcttaaagtggcagtccgtattattttgtttctaaactgaaagtaaaagatgTTTTTCTGAGTAGAGAAGGaataaaaaactgtgtttaatggta

Function

symbol description
sugt1 Predicted to be involved in protein stabilization. Orthologous to human SUGT1 (SGT1 homolog, MIS12 kinetochore complex assembly cochaperone).

NR:

description
protein SGT1 homolog isoform X1

GO: NA

KEGG:

id description
K12795 SUGT1, SGT1; suppressor of G2 allele of SKP1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007254805.3 True 1895 mRNA 0.44 13 18860730 18895531
XM_015607258.2 False 1893 mRNA 0.44 13 18860729 18895531

Neighbor

gene id symbol gene type direction distance location
LOC103031957 LOC103031957 coding upstream 2366 18827279 ~ 18858363 (+)
LOC103031642 ednrb,LOC108434743,LOC105911940,LOC106569465,LOC107658690,LOC107566659 coding upstream 52567 18789523 ~ 18808162 (+)
mid1 mid1,LOC103030906,LOC106575281,LOC106574413 coding upstream 118087 18642708 ~ 18742642 (+)
arhgap6 arhgap6 coding upstream 294015 18404506 ~ 18566714 (+)
LOC111193482 NA coding upstream 523467 18336145 ~ 18337262 (+)
LOC103024565 LOC108434738 coding downstream 113035 19008566 ~ 19012966 (+)
LOC103033226 NA coding downstream 118875 19014406 ~ 19022921 (+)
LOC103024880 NA coding downstream 137874 19033405 ~ 19050916 (+)
LOC111193549 NA coding downstream 161867 19057398 ~ 19067487 (+)
LOC103025512 fgf14,LOC108434733,LOC108258297,LOC105911936 coding downstream 273352 19168883 ~ 19309236 (+)
G104588 NA non-coding upstream 211654 18648215 ~ 18649075 (+)
G104504 NA non-coding upstream 287195 18569451 ~ 18573534 (+)
G104534 NA non-coding upstream 350087 18447789 ~ 18510642 (+)
G104499 NA non-coding upstream 412623 18362032 ~ 18448106 (+)
G104658 NA non-coding downstream 34504 18930035 ~ 18930393 (+)
G104660 NA non-coding downstream 45567 18941098 ~ 18956053 (+)
G104667 NA non-coding downstream 103004 18998535 ~ 19026586 (+)
G104666 NA non-coding downstream 131621 19027152 ~ 19029365 (+)
G104680 NA non-coding downstream 135486 19031017 ~ 19031311 (+)
LOC111193547 NA other upstream 1441591 17406595 ~ 17419138 (+)
LOC103031769 prps2 other upstream 1721756 17119847 ~ 17138973 (+)
LOC103035065 nhlh2,LOC103035065,LOC108434665,LOC108258389,LOC107739819,LOC105019883 other upstream 1966137 16888386 ~ 16894592 (+)
LOC103037450 NA other upstream 2286296 16555694 ~ 16574433 (+)
col17a1 col17a1,LOC108434660,LOC107684270,LOC107583183 other upstream 2352942 16463938 ~ 16507787 (+)
G104656 pcdh8 other downstream 23529 18919060 ~ 18923203 (+)
nfkbiz nfkbiz other downstream 838695 19734226 ~ 19744924 (+)
G105276 NA other downstream 2093742 20989273 ~ 21055483 (+)
G105312 abcb6,abcb6a,LOC107556273,LOC107750068 other downstream 2123507 21019038 ~ 21028990 (+)
G105357 NA other downstream 2431661 21327192 ~ 21369204 (+)

Expression


Co-expression Network