G53545


Basic Information

Item Value
gene id G53545
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 5474236 ~ 5476740 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU60978
GAGGGGAAAAAAGAGAAAAAAGACATTATCCTAGTGGCACAAAAGTTCAAAAAAAACAAAAGCACAGTGGGGGTAAAAATTTTTTGACTAGGACTGTCACTAGAGACTGACCGTGTGATGTCCAGAGCTTTTTGGACCTTAGCTTGGACTGAGCCCAAGAGGTCAGCTCCCATTTTCTTCAGTAGTTGAGTGAGCAGAACAAAAAGCCAGTCCTGGAGATCCTCTCTGTGCACAGTAATGAAGTCCACTAGTGTCTCCAAGAACATGCTAAACACTACCTTGCTGTGAGGATCTGCAAACATCCTGGTGAAGATCTCACACAGCCTCTTCAGCTCCACACGGC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU60978 True 343 lncRNA 0.45 2 5474236 5476740

Neighbor

gene id symbol gene type direction distance location
CI01000009_05402729_05410456 NA coding downstream 63780 5402504 ~ 5410456 (-)
CI01000009_05367161_05370504 PTPLB, HACD2, DKFZP459B2333 coding downstream 103732 5365766 ~ 5370504 (-)
CI01000009_05362086_05363378 NA coding downstream 110155 5362042 ~ 5364081 (-)
CI01000009_05278137_05361256 ADCY5 coding downstream 112758 5277137 ~ 5361478 (-)
CI01000009_05190789_05192684 NA coding downstream 281346 5190494 ~ 5192890 (-)
CI01000009_05513478_05515588 NA coding upstream 36529 5513269 ~ 5515588 (-)
CI01000009_05571226_05587885 NA coding upstream 93761 5570501 ~ 5588015 (-)
CI01000009_05675971_05682578 NA coding upstream 199032 5675772 ~ 5683383 (-)
CI01000009_05724421_05725824 NA coding upstream 247101 5723841 ~ 5725834 (-)
CI01000009_05759177_05759509 NA coding upstream 282259 5758999 ~ 5759770 (-)
G53510 NA non-coding downstream 65892 5407998 ~ 5408344 (-)
G53503 NA non-coding downstream 79911 5393525 ~ 5394325 (-)
G53498 NA non-coding downstream 86572 5387321 ~ 5387664 (-)
G53490 NA non-coding downstream 99517 5374270 ~ 5374719 (-)
G53487 NA non-coding downstream 104455 5369580 ~ 5369781 (-)
G53511 NA non-coding upstream 15071 5491811 ~ 5498995 (-)
G53515 NA non-coding upstream 25655 5502395 ~ 5505248 (-)
G53514 NA non-coding upstream 30232 5506972 ~ 5508789 (-)
G53552 NA non-coding upstream 46904 5523644 ~ 5539688 (-)
G53556 NA non-coding upstream 62465 5539205 ~ 5546637 (-)
G52828 NA other downstream 1242767 4217420 ~ 4231469 (-)
CI01000009_03261739_03262843 NA other downstream 2212279 3261038 ~ 3262843 (-)
CI01000009_02885473_02893975 NA other downstream 2574829 2883688 ~ 2893975 (-)
G52410 NA other downstream 2911703 2551724 ~ 2562533 (-)
G55814 NA other upstream 2949081 8425821 ~ 8428012 (-)
CI01000009_08858198_08860555 NA other upstream 3381412 8856310 ~ 8860563 (-)
G59097 NA other upstream 6811477 12288217 ~ 12289518 (-)
CI01000009_13975122_13976026 NA other upstream 8498648 13975099 ~ 13978614 (-)

Expression


Co-expression Network