LOC103036999 (LOC108434729)


Basic Information

Item Value
gene id LOC103036999
gene name LOC108434729
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 19482626 ~ 19532872 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007254821.3
GAGCGCTGGAGCGCGAGGCACTGGCGCGTGCTCCCCGGTGGATGTTACCGGCTATGGACCGAGCTCGCGGCGCTGTCGTTTCTCCGCTGCAGTCCCGCTGCAGTGCTTTAGCTGTGCTCGGGATTCGGGATGTGTTCTGAAGTGTGTGTTCAGGTCCGCGCTGTGTGTTTTGATCTGCTGGGAGAACTTTAAGATAGATATAGGAGGGGGGTAGAGGAGGGGGGTCGCTGTGCTTGGATCAGTCCGACCACCTGTTAAACGCGCCTGAATGGAAACTATGTCACCTCAGCAGCAAATAAACATCAGCCAGAGCCGCTCCTCATCTATCTCCACCGAGGACACAAAAATGGAGAACAAACGGAGGATGAAGGCTATGTCTTATCGCCGGCAGTCTGCTCCTTCCCTGGTCATCAGCAAAGCTCTGACCAGATCCAGAACAATGTCCAGGGAAAACTGCTTGTCTCCAGTCTGCCCAGAAACCTGCTTGCTGGTGCAGTCGTTCCTGACCCCTGGGCGGATGTTTATTTCTCATGCCTATGCCCAGCTGAAGACTGGCCTGCAGACACAGGAGAGACACCTGTTCCTCTTCACCGACATCCTGCTCATCAGCAAGGCCAAATCTTCAACAAACTTCAAGCTGAAAGCCCAGGCACGTGTCTGTGAAATGTGGACGGCGAACTGTATGGATGAAGTGTGTGAGGGAAGTAACAGTCCTGAAAAAAGCTTCGTCATGGGTTGGCCCACCTGCAACTGTGTGGCTACATTCAGCTCTGTGGAACAGAAGGAAAAGTGGCTCTCCCTTATGAAAAGTCAGATAAAAGACGAGAAAGAGAAGGATCACCCCAAAACAATCCCTCTTCGAGTGTACACCAAGGACTTTTCATATAAAACCCTTGCTGTGAGTAATTCGGACAGTGCTAATGAAGTTACTCGTCTGGCGCTGCAGCAGTTCGGCATTGTGGGTTGTGTGAAGGACTACCAGCTGTGGGTGAGTTCCAGAAAAGACAACTCTCCTTACCCTCTCATTGGTCATGAATATCCTTTCAGCATTCAAATGAGCCACATAAGAGAGCCACTGAGTCAAACCGGTGATGTGAAAAGTGAAGCAACTACTCCAccagacaaagacaaagaagtGGAGCTGCTCTTTGACCAGTTACAGACCGACAGCCAGTGTCAGTTCATCCTCAAGCCGAGTAGAGTGGCTGTAGGACACTCCTTTGCAGTTGATCCAGACCAGAAGCCATTCAAGAGACGCCGTTCACTCATCAACTGGGCTTTTTGGCGTGGCTCCAGCACTCAGCTGGATGATCCACCCCCGTCTCCTTTTCTTCCCACCACTGGTCGGCTCTTTGGCCTGCCGCTCAGTGTGGTGTGCACGGATAACAGCCTCCCCAAGCCTATAATGGACATGTTGGTGTTTCTGTACCAGGAGGGGCCGTTCACACGGGGAATCTTCCGGCGCTCTGCCGGGGCCAAGGCGTGCAGAGAGCTACGAGACATACTGGACTCTGGATTCCAGGACATTCAGCTGGCCCGTCAGTCCATCTTTGTGATTGCTGCTGTGTTTAAGgACTTCCTGCGGAGCATTCCAGGCAGCTTGTTACTATCAGATCTCTATGAGAAGTGGATGGCCACCATGGATTCATCCGATGAAGCAGAAGACAACCAGTTACAGGCTATTCAGAGTTTGGTGACCTCACTCCCCTCTGAGAACATCCTCCTCCTGAAGCACATTTTGGCAGTGCTCTATAACATCCAGCTCCGAGCTGAGGAAAACCAGATGAATGCCTTCAACCTTGCTGTTTGCATttctcccagcatgctctcttCCTCTGCACAGAGCAGCCCTGAGATGGAAGGAGAAGGTGCCAAAAAGGTCTGTGACTTGGCAAGGATAATGATTGAAAATTGCACGGCAGTAATGGGAGAAGACGTCACCACCCTGTTTGATGGTTTTCCTCAAAGATGCAATATAGATGGTCATGGATCAGACATTTCCTCTTATCAGATGACAGACTCATCGTATGACAGTCTGGAGAATGAACTGAACGATGATTCTGGATCTCCCTTCCAGCCCATGCAGAGGTCGCGGGGGAAGCCAGACAGTCGCAGCTGTGACTCAGTGCTTACCCTGAGTGACTGTGACCTGGACCAGCCTGACCAAGACAACACCCTCAATGCACACCACCTGCTTTCCCCACTTTCCCATCCTGTAAAAACTAGCTCTGCAGTGAGCCCGTCCTCCCCTCGCCCCTGTTCCCCTTGCGAGGTACCTGCTCTGCAACAGGGAATTCGTCAGTTGAGGCGCTGTTCTGAACCTGCCATCTGGTCTTCGACCTCGTCGTTGAGCAAGTACCTGGAGCGAGTGGGAAACCGAAAGGGCAGCTATGACGGTGCCGCAAGCCAAggcaaaaacgatgcagagatGCTTGTTAAGCATTTGAAAAACTTGAGGTTGGACAAGCAAAGTAGCTCTAGCCAGAGTGGTCAGAAAGAAAGACCTGTTCGTAAAGAGCGTAAAGAGCACCTTAAACCTCCCCCTCTGCATCTAGATGCCAGTTGCTCCAGTCTTTATTCTCCCGCGGCTTCTCCAACACGCTCTTCAATGAGCTCCTTGGACAGTGCTTTCTCTCAGCACTCAGCTGACTTTGCCAAACCTTGCTCTCAACCTGTGGGCACCTTCAAGGCAATAGTGACCAGTTCTCCCAGATCCCCTGGCTTCGTGTCCATACCGTCACCTGGCCCAACAGGTCCTTCTCCAAAGGAATCTCCACCTAAAGAGAGGTTTGACTGGAGCCAACTGAGAAGTACGCATGGGTTACATCCAAATACTTGGCTCAAGAGAGACCACAGACTGTCCTTGTCAAAAGACAGAATTGGCCTTGAACATGAAGAAACAGAGGATCAACCTGTCCAGTCTGATGTTTCCTTCCAGACTGACCACATCAAGGAGAATCAAAGTCTTGAGTCAAGCAATTCAACCTGTAGGAAAAGATCCACCAGCCCTCCTTCCTATCAAGAAGCCATGCTTCAGACGCAGAACAGCAAGCCAGTTTATTACCATGCCTCAGAGAAACCTCTAACAGTCAAAGAACTGAGAGAACTTCACAATCAGGCGTGTATCTTGCGCAAGACAAACCTGGGAAGGAGGTATATTCAAAAGAGCACCTTTAACACAACTGGAGGCGAGAACAGCAGCCTGCCAAAGTCTTTGTTCTACGGGCAAAGTGGTCGATGCTTGGCCTTGTACAGGCAGAAATCGTACTCCCTCATTCCTGTCGAAGAGACGTCTCATGGATACGCTTCATGTCAGCGCCGAGCATCTGAACCTGGAAGCACTTTCCTGGGGTTAGACCGGGAGTCCGCGAAGAGTCTGGAGTATCTGCACAGGCAGGCCATAGCCAACCAAGACAGAGATTCTGTCTCCCTCCATTATGGACTCAAGGTATCCGATGTGGAACCGCATGATAGAGCCACTGAACCTTGCTTGTCTCCTTCTGCCACAAAGGCTGTGAAGGACTACTTCACCCTGCATGGAGGTGATGATACCCAGAGTAATGTAAAGAAGAGTCAGGAAGTGGCACTGGCAGTTGTCCATGGCAAGCGGGAGTGGATAAGGAGGTGCAGCGATCCGCGGCTTGAGGACTTTGAAAAGATGTTTTTTGCGGAGGAGTCTTACGTTTGACTTACTAGTCACAAGTTGTGCATTTTCCAAAATTCTGTCCCAAAGTGGTTTTCCCTGTTTTGACCTGATCTTATACAATTGTTAATCGTTACTGTGGTCAATTAATAAATTGCTTTTAGATCAGGGGTATCAGACCTGTACACATTTTGGACCGCTGttgctgcatgttttttttccagccaAATAGAAGGTCCTTTATGGGTTCTTTGAAAACTTTGAAGACCAGTTGAATAAACAAGTGGAATTAGGTTTGATGCTGCTTGCTTACAGGCCAAATTATACTCTTGCGTCAAACCTACGCATAGCCACGGACCATACGCCATAGCCCGATGCGTAGCTCCCTAGAAATGTAGCAATGCAGCATCAAATTTGATTGGGCCCCATGCATTCCGAGGATGCATGCATGCAGTATAAATTCAGGCAGCCTTGTAGGGCACTCGCGCAAGCTACACCACTTGTAACAAATCAACTCAAaccagaagtataaattggccttaagaATTAAAACCAACCACACCAGCCCAATATGTATAGGTTTGAAACCCCTGTTCTTTAGAATCAGGAAACACGGAAAGCATGGAGAATTCTAGGACTAGTTTAGAAAGTAATCTTTAATGTAAATATGGTTTGTATATTGGAAGCATGTGGCTGTGGCctgctgtgtgtatatacactatatggtcaaaagtattgggacacctgctcattcgtTGTTTCTACCCAAATCAAGGGTATTCAAGGAGagtttatccttttttttttactaattttgtcagagtaactgtctctactgtctaatTGAGGAAACAAAGCTGGATGATCACCCCTCCATCCTATTTAAATTCAAGGTTAGGGGCTTTATACCCATCTAGCCCACATCTGGTATTAGGCATAGTGGcagtaggtttatgtttggCACTGTTTGGCTCAGTTCCAGAGGGTTCAATTCCagtggcagtacttctctacaggaactAGGCAAGTTGGTTGTATTGAAAGTACATAAAGTTGAATGAA

Function

NR:

description
PREDICTED: rho GTPase-activating protein 20-like

GO: NA

KEGG:

id description
K20641 ARHGAP20; Rho GTPase-activating protein 20

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007254821.3 True 4705 mRNA 0.49 15 19482626 19532872

Neighbor

gene id symbol gene type direction distance location
LOC103036301 pspc1,LOC108258933,LOC108434730 coding upstream 25460 19425383 ~ 19457166 (+)
LOC103025817 LOC108434731,LOC106575534,LOC106575594 coding upstream 63247 19413020 ~ 19419379 (+)
LOC103035666 LOC108434719 coding upstream 71413 19409307 ~ 19411213 (+)
LOC103025512 fgf14,LOC108434733,LOC108258297,LOC105911936 coding upstream 173390 19168883 ~ 19309236 (+)
LOC111193549 NA coding upstream 415139 19057398 ~ 19067487 (+)
LOC103026133 LOC108434715 coding downstream 29807 19562679 ~ 19576104 (+)
LOC103040050 LOC108434714,LOC108258858 coding downstream 45417 19578289 ~ 19591937 (+)
LOC103034347 LOC108429797,LOC108258862 coding downstream 61437 19594309 ~ 19607808 (+)
LOC103026741 LOC108429797 coding downstream 90556 19623428 ~ 19648111 (+)
LOC103039332 LOC108429797,LOC108258862 coding downstream 127133 19660005 ~ 19684150 (+)
G104729 NA non-coding upstream 159396 19323008 ~ 19323230 (+)
G104712 NA non-coding upstream 276912 19205426 ~ 19205714 (+)
G104706 NA non-coding upstream 331664 19147704 ~ 19150962 (+)
G104702 NA non-coding upstream 362360 19118654 ~ 19120266 (+)
G104680 NA non-coding upstream 451315 19031017 ~ 19031311 (+)
G104798 NA non-coding downstream 1162 19534034 ~ 19534314 (+)
G104799 NA non-coding downstream 1584 19534456 ~ 19536048 (+)
G104809 fdx1,LOC108434718,LOC108259004,LOC102789999 non-coding downstream 10831 19543703 ~ 19558989 (+)
G104811 NA non-coding downstream 27161 19560033 ~ 19560591 (+)
G104841 NA non-coding downstream 157228 19690100 ~ 19690589 (+)
G104656 pcdh8 other upstream 559423 18919060 ~ 18923203 (+)
LOC111193547 NA other upstream 2063488 17406595 ~ 17419138 (+)
LOC103031769 prps2 other upstream 2343653 17119847 ~ 17138973 (+)
LOC103035065 nhlh2,LOC103035065,LOC108434665,LOC108258389,LOC107739819,LOC105019883 other upstream 2588034 16888386 ~ 16894592 (+)
LOC103037450 NA other upstream 2908193 16555694 ~ 16574433 (+)
nfkbiz nfkbiz other downstream 201354 19734226 ~ 19744924 (+)
G105276 NA other downstream 1456401 20989273 ~ 21055483 (+)
G105312 abcb6,abcb6a,LOC107556273,LOC107750068 other downstream 1486166 21019038 ~ 21028990 (+)
G105357 NA other downstream 1794320 21327192 ~ 21369204 (+)
LOC103046939 LOC107701771,LOC107725347,LOC107565259 other downstream 2722213 22255085 ~ 22283453 (+)

Expression


Co-expression Network