LOC103039009


Basic Information

Item Value
gene id LOC103039009
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 19688960 ~ 19703422 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007254827.3
ACGGGAAAATCTCTGCTTCATGCTGTTGGCACAAAGATTTAGCTGTTCACAGTCTGGACTGGAAAGCCCCATGctatttacttttttagttttactttcAAAAGTGATGTTCCTGTGGGAATGACAGCATCCCTACTTGCTGTATATATAAGAGCTTCCTTTTAATcaactttttgtttatttgcatcagCCTGCTAAAGACTGTAGAAGAGTGCATTTGTCTCTTGAAAATGGAAAAGGAACAATACAGTTCTGAAGATGATTTATCTTGTGAAAACAATAAATCACTGGACGGGATGTTTCATGGCCACTTTGAGGACAGAGTTCGTCCCTATATTGACCTGATTGATTCTCTGAGGCAGCTTGGTGTTGAAGAAGATTTACCTCTACCAAGTATAGCGGTGATTGGAGATCAGAGCTCTGGGAAAAGCTCAGTGTTGGAGGCTTTATCTGGAGTTGCTTTACCCCGAGGAAGtgGTATTGTTACCAGATGTCCTCTGGAGCTGAAGTTGAGGAAGATCAAAAATGGAGTTCAGTGGCGAGCTACCATATCTTACAGCAATGTGCAGATTGAGTTTGATAACCCTGCACTTGTTGAACGTTATGTTAAAGAAGCCCAAAACAAACTGGCTGGAGATGGAGTTGGAATCTGTGATGAGCTCATCACACTAGAGATTAAGTCTCCTGAAGTGTGTGATCTCACACTGATTGATCTTCCTGGGATCGCCAGAGTTCCTGTGAAAGGTCAGCCTGAGGATATTGGAGATCAGATAAAGAATCTCATACATAGGTTCATTAGGAAGGTTGAAACCATCAATTTAGCAGTGGTTCCATGCAACGTTGACATTGCAACTACAGAGGCACTGAGAATGGCACAGGAAGTGGACCCTGAAGGAAAAAGAACACTAGCCATTCTCACTAAGCCAGACCTTGTTGATAAAGGAACAGAGAAAAACGTTCTGGATGTTGTCAGAAATCAGGTTATCTCTTTAAGCAAAGGATACATCGTTGTTAAATGCCGTGGCCAGAAGCAGATTGATGAGAAGATCTCTCTGGATGAGGCTACTCGAGTGGAGAGAGATTTCTTCAAACATCATGAACACTTCAGTTGCCTTCTGAAGGAGGAGAGAGCCACTGTTAAGTGCCTTGCCAGCAGATTGACTCAGGAACTGGTTGACCACATCAAAaaATCCCTGCCTGTGATGTTGGAGCAGGTAAATAAGCAACTGTGGGACCTGAGAAAAGAGCTGAGTCGTTGTGATGGTGGCCCACCACTGGATCCACAGAAGAGGAAGGtcttttttattagtATCGTGATGAAATTCAATGACAAGATCAATCACCTGTCACGTGGAGAAGTGAGTAACAGTGATGACAACTTGTTTGTTCAGCTCCGGGCAGAATTCAAGAAGTGGATGGACCATCTTGACAGTACAGATTCATCATTTTATCAGACGGTCCAGAACGTGGTGAATGAGTATGACCAGAAACACAGAGGAAGAGAGCTGCCTGGCTTCAGTGattataatgtgtttgagaCGTTGGTGCAGAGGCTTGTGATGCAACTGAAGGGACCAGCCAATTACACACTCATGCTCATAAGAGAGAAAATCCAGAAATGTTTCTCAGATGTGTCCAAAGAATGCTTTAGCATGTATCCTTTCCTCCATTGTGTTGCAACAAACAAGATAGACAACATTCAGTCAAAGCAAGAAGCCAAAGCGGAGCAGAGGATCCTGGAGCAGTTTGAGATGGAGCAACTGGTCTACACTCAGGATGACATCTACTTCAAAATCTTAAACCAGGCAGAATTTGCTGAGGACAAAAAGAAATCTgaagataaaaagaagaaaaaaggttCTAGCTTCGACAGCAAGAGCATGTTTCCTAAAATGCTGAGGACCTATTATGAGATCGTAGTGCAGCGATTGGCCGACCAGGTGCCCATGCTAATACGGTACTTCATGCTAAAggaatcttctcagctgctttGCAAAGAGATGCTGGGGTTGCTGGATGGAGCCAATGTTACTGAGGTTCTCCGTGAGGAGTCAGAGATCAGCAGACTCCGCATTAACATGCAGAACCGTGTAGAGCGTCTCACGGCCGCTCAAGAAAAACTCAGTAACTTTGTTTAAGGAACCactatcagaatac

Function

GO:

id name namespace
GO:0072330 monocarboxylic acid biosynthetic process biological_process
GO:0009259 ribonucleotide metabolic process biological_process
GO:0009260 ribonucleotide biosynthetic process biological_process
GO:0046031 ADP metabolic process biological_process
GO:0046034 ATP metabolic process biological_process
GO:0006090 pyruvate metabolic process biological_process
GO:0006096 glycolytic process biological_process
GO:1901292 nucleoside phosphate catabolic process biological_process
GO:1901293 nucleoside phosphate biosynthetic process biological_process
GO:1901575 organic substance catabolic process biological_process
GO:0009108 obsolete coenzyme biosynthetic process biological_process
GO:0006163 purine nucleotide metabolic process biological_process
GO:0006164 purine nucleotide biosynthetic process biological_process
GO:0006165 nucleoside diphosphate phosphorylation biological_process
GO:0046939 nucleotide phosphorylation biological_process
GO:0009117 nucleotide metabolic process biological_process
GO:0006733 obsolete oxidoreduction coenzyme metabolic process biological_process
GO:0009123 nucleoside monophosphate metabolic process biological_process
GO:0009124 nucleoside monophosphate biosynthetic process biological_process
GO:0019359 nicotinamide nucleotide biosynthetic process biological_process
GO:0009126 purine nucleoside monophosphate metabolic process biological_process
GO:0009127 purine nucleoside monophosphate biosynthetic process biological_process
GO:0019362 pyridine nucleotide metabolic process biological_process
GO:0019363 pyridine nucleotide biosynthetic process biological_process
GO:0046390 ribose phosphate biosynthetic process biological_process
GO:0009132 nucleoside diphosphate metabolic process biological_process
GO:0055086 nucleobase-containing small molecule metabolic process biological_process
GO:0019637 organophosphate metabolic process biological_process
GO:0009135 purine nucleoside diphosphate metabolic process biological_process
GO:0006753 nucleoside phosphate metabolic process biological_process
GO:0006754 ATP biosynthetic process biological_process
GO:0006757 ATP generation from ADP biological_process
GO:0009141 nucleoside triphosphate metabolic process biological_process
GO:0009142 nucleoside triphosphate biosynthetic process biological_process
GO:0009144 purine nucleoside triphosphate metabolic process biological_process
GO:0009145 purine nucleoside triphosphate biosynthetic process biological_process
GO:0009150 purine ribonucleotide metabolic process biological_process
GO:0044281 small molecule metabolic process biological_process
GO:0009152 purine ribonucleotide biosynthetic process biological_process
GO:0044283 small molecule biosynthetic process biological_process
GO:0090407 organophosphate biosynthetic process biological_process
GO:1901135 carbohydrate derivative metabolic process biological_process
GO:0042866 pyruvate biosynthetic process biological_process
GO:1901137 carbohydrate derivative biosynthetic process biological_process
GO:0009156 ribonucleoside monophosphate biosynthetic process biological_process
GO:0072521 purine-containing compound metabolic process biological_process
GO:0072522 purine-containing compound biosynthetic process biological_process
GO:0009161 ribonucleoside monophosphate metabolic process biological_process
GO:0072524 pyridine-containing compound metabolic process biological_process
GO:0072525 pyridine-containing compound biosynthetic process biological_process
GO:0009165 nucleotide biosynthetic process biological_process
GO:0009166 nucleotide catabolic process biological_process
GO:0009167 purine ribonucleoside monophosphate metabolic process biological_process
GO:0009168 purine ribonucleoside monophosphate biosynthetic process biological_process
GO:0006793 phosphorus metabolic process biological_process
GO:0046434 organophosphate catabolic process biological_process
GO:0006796 phosphate-containing compound metabolic process biological_process
GO:0009179 purine ribonucleoside diphosphate metabolic process biological_process
GO:0009185 ribonucleoside diphosphate metabolic process biological_process
GO:0019693 ribose phosphate metabolic process biological_process
GO:0009199 ribonucleoside triphosphate metabolic process biological_process
GO:0009201 ribonucleoside triphosphate biosynthetic process biological_process
GO:0019439 aromatic compound catabolic process biological_process
GO:0009205 purine ribonucleoside triphosphate metabolic process biological_process
GO:0032787 monocarboxylic acid metabolic process biological_process
GO:0009206 purine ribonucleoside triphosphate biosynthetic process biological_process
GO:0034655 nucleobase-containing compound catabolic process biological_process
GO:0034404 nucleobase-containing small molecule biosynthetic process biological_process
GO:0046496 nicotinamide nucleotide metabolic process biological_process
GO:0016052 carbohydrate catabolic process biological_process

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007254827.3 True 2157 mRNA 0.43 14 19688960 19703422

Neighbor

gene id symbol gene type direction distance location
LOC103039332 LOC108429797,LOC108258862 coding upstream 4810 19660005 ~ 19684150 (+)
LOC103026741 LOC108429797 coding upstream 40849 19623428 ~ 19648111 (+)
LOC103034347 LOC108429797,LOC108258862 coding upstream 81152 19594309 ~ 19607808 (+)
LOC103040050 LOC108434714,LOC108258858 coding upstream 97023 19578289 ~ 19591937 (+)
LOC103026133 LOC108434715 coding upstream 112856 19562679 ~ 19576104 (+)
cep97 cep97 coding downstream 10154 19713576 ~ 19727108 (+)
eed eed coding downstream 77533 19780955 ~ 19791604 (+)
hikeshi hikeshi,LOC106574699 coding downstream 89452 19792874 ~ 19798191 (+)
ccdc81 NA coding downstream 96171 19799593 ~ 19822020 (+)
prss23 prss23,LOC107570079,LOC106575973 coding downstream 175353 19878775 ~ 19884491 (+)
G104811 NA non-coding upstream 128369 19560033 ~ 19560591 (+)
G104809 fdx1,LOC108434718,LOC108259004,LOC102789999 non-coding upstream 129971 19543703 ~ 19558989 (+)
G104799 NA non-coding upstream 152912 19534456 ~ 19536048 (+)
G104798 NA non-coding upstream 154646 19534034 ~ 19534314 (+)
G104729 NA non-coding upstream 365730 19323008 ~ 19323230 (+)
G104891 rpl24,LOC107575619,LOC107551103,LOC107751658,LOC107662676 non-coding downstream 3224 19706646 ~ 19710814 (+)
LOC111193552 NA non-coding downstream 78707 19782129 ~ 19782686 (+)
G104921 NA non-coding downstream 109961 19813383 ~ 19863419 (+)
G104944 NA non-coding downstream 243421 19946843 ~ 19947441 (+)
G104950 NA non-coding downstream 293157 19996579 ~ 20008771 (+)
G104656 pcdh8 other upstream 765757 18919060 ~ 18923203 (+)
LOC111193547 NA other upstream 2269822 17406595 ~ 17419138 (+)
LOC103031769 prps2 other upstream 2549987 17119847 ~ 17138973 (+)
LOC103035065 nhlh2,LOC103035065,LOC108434665,LOC108258389,LOC107739819,LOC105019883 other upstream 2794368 16888386 ~ 16894592 (+)
LOC103037450 NA other upstream 3114527 16555694 ~ 16574433 (+)
nfkbiz nfkbiz other downstream 30804 19734226 ~ 19744924 (+)
G105276 NA other downstream 1285851 20989273 ~ 21055483 (+)
G105312 abcb6,abcb6a,LOC107556273,LOC107750068 other downstream 1315616 21019038 ~ 21028990 (+)
G105357 NA other downstream 1623770 21327192 ~ 21369204 (+)
LOC103046939 LOC107701771,LOC107725347,LOC107565259 other downstream 2551663 22255085 ~ 22283453 (+)

Expression


Co-expression Network