eed (eed)


Basic Information

Item Value
gene id eed
gene name eed
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 19780955 ~ 19791604 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007254833.3
TCGACAGAGCACCGTTCTTCGGTCTGCAGTAGCGGAGCTCCTCTCCACGCCGCTTTGTGGCAGCGCAGCGTGGCCGCCGGGTTTTTCTTCagcagaggaagaagaagatgagGGGGAAGATGTCTGAAGCTCCTGCCGAGGCGGGAAACGACATGCCGGCAAAAAAGCAGAAACTAAGCAGCGACGAGAACAGCAACCCGGACCTTTCCGGAGACGAGAACGATGATGCCGTCAGCGTTGAGAGTGGCACCAATGCTGAACGTCCCGACACCCCCACCAACACCGCCAATGCCCCTGGCAGAAAGAGCTGGGGCAAGGGCAAGTGGAAATCGAAGAAATGCAAATACTCCTTCAAGTGTGTTAACAGTCTAAAGGAAGACCATGGCCAGCCTTTGTTTGGGGTCCAGTTCAACTGGCATAGTAAGGAGGGCGACCCCCTTGTCTTTGCAACAGTGGGAAGCAACAGAGTCACCTTATATGAATGTCATTCCCACGGAGAGATCCGGCTCCTGCAGTCCTACGTAGATGCGGATGCAGATGAGAACTTCTACACTTGCGCTTGGACGTATGACACCAGCACCAGTCACCCTCTGTTGGCGGTAGCTGGCTCCCGAGGCATCATCCGCATCATTAACCACATCACTATGCAGTGCGTCAAACATTATGTGGGGCATGGAAACGCAATCAATGAGCTCAAATTTCATCCAAGAGATCCAAACCTACTGCTGTCAGTGAGCAAAGACCACGCGTTGCGTCTATGGAACATTCAGACGGACACACTTGTAGCCATATTTGGTGGTGTGGAGGGCCATAGAGATGAGGTGCTGAGTGCGGACTTTGACCTCCTTGGTGAGAAGATCATGTCTTGTGGAATGGACCACTCTCTGAAACTGTGGAGGATTAACTCTGAGCGAATGCAGAAAGCAATACGATGCTCTTATGAGTACAACCCCAGCAAGACCAACAGGCCTtttgtgtctcagaaaatccaCTTCCCAGACTTTTCCACAAGAGACATCCACAGGAACTATGTAGATTGCGTACGCTGGCTTGGGGATTTAATCCTCTCTAAGtCCTGTGAAAATGCTATTGTGTGTTGGAAACCTGGTAAGATGGAGGATGATATCGATCACATCAAGCCCAACGAGTCTAACGTGACTATCCTGGGCCGCTTTGACTACAGCCAGTGTGACATCTGGTACATGCGCTTCTCCATGGACTTTTGGCAAAAGaTGTTGGCTCTGGGAAATCAAGTCGGAAAGCTTTATGTCTGGGACCTGGAAGTAGAAGATCCTCATAAAGCAAAGTGTACCACCCTCACCCTCCCGAAATGCACCTCAGCCATAAGACAGACCAGCTTCAGCAGGGACAGCAGTATTCTCATAGCGGTGTGTGACGACGCCTCTATCTGGCGCTGGGACAGGTTACGCTGAGGCGTTTTCCTTCCTCGTGCCAGTACAAATGACTGCTCTTCACAGAAGGTCCTTGTGGCTGAGGAACCAGGACAATGGATGGTCTTTAGGTCCAATCTGCTTAGGCTGTGGAACTTGCTTACTCAGATGTGTTGCACCTctgcttttgttttgtcttttgccACCTTTTCTGTCTTTAATAAAACTTATTTTGTACCA

Function

symbol description
eed Predicted to contribute to histone methyltransferase activity (H3-K27 specific) and nucleosome binding activity. Predicted to be involved in chromatin silencing and negative regulation of transcription by RNA polymerase II. Predicted to act upstream of or within histone methylation. Predicted to be located in nucleus. Predicted to be part of ESC/E(Z) complex. Is expressed in several structures, including eye; gonad; heart; intestine; and midbrain hindbrain boundary. Orthologous to human EED (embryonic ectoderm development).

NR:

description
PREDICTED: polycomb protein EED

GO: NA

KEGG:

id description
K11462 EED; polycomb protein EED

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007254833.3 True 1631 mRNA 0.50 12 19780955 19791604

Neighbor

gene id symbol gene type direction distance location
cep97 cep97 coding upstream 53847 19713576 ~ 19727108 (+)
LOC103039009 NA coding upstream 77533 19688960 ~ 19703422 (+)
LOC103039332 LOC108429797,LOC108258862 coding upstream 96805 19660005 ~ 19684150 (+)
LOC103026741 LOC108429797 coding upstream 132844 19623428 ~ 19648111 (+)
LOC103034347 LOC108429797,LOC108258862 coding upstream 173147 19594309 ~ 19607808 (+)
hikeshi hikeshi,LOC106574699 coding downstream 1270 19792874 ~ 19798191 (+)
ccdc81 NA coding downstream 7989 19799593 ~ 19822020 (+)
prss23 prss23,LOC107570079,LOC106575973 coding downstream 87171 19878775 ~ 19884491 (+)
LOC103043041 LOC108429787 coding downstream 290278 20081882 ~ 20145614 (+)
dusp27 dusp27,LOC102309085 coding downstream 361801 20153405 ~ 20165191 (+)
G104891 rpl24,LOC107575619,LOC107551103,LOC107751658,LOC107662676 non-coding upstream 70141 19706646 ~ 19710814 (+)
G104841 NA non-coding upstream 90366 19690100 ~ 19690589 (+)
G104811 NA non-coding upstream 220364 19560033 ~ 19560591 (+)
G104809 fdx1,LOC108434718,LOC108259004,LOC102789999 non-coding upstream 221966 19543703 ~ 19558989 (+)
G104799 NA non-coding upstream 244907 19534456 ~ 19536048 (+)
G104921 NA non-coding downstream 21779 19813383 ~ 19863419 (+)
G104944 NA non-coding downstream 155239 19946843 ~ 19947441 (+)
G104950 NA non-coding downstream 204975 19996579 ~ 20008771 (+)
G105007 NA non-coding downstream 411031 20202635 ~ 20202939 (+)
G105008 NA non-coding downstream 411590 20203194 ~ 20205750 (+)
nfkbiz nfkbiz other upstream 36031 19734226 ~ 19744924 (+)
G104656 pcdh8 other upstream 857752 18919060 ~ 18923203 (+)
LOC111193547 NA other upstream 2361817 17406595 ~ 17419138 (+)
LOC103031769 prps2 other upstream 2641982 17119847 ~ 17138973 (+)
LOC103035065 nhlh2,LOC103035065,LOC108434665,LOC108258389,LOC107739819,LOC105019883 other upstream 2886363 16888386 ~ 16894592 (+)
G105276 NA other downstream 1197669 20989273 ~ 21055483 (+)
G105312 abcb6,abcb6a,LOC107556273,LOC107750068 other downstream 1227434 21019038 ~ 21028990 (+)
G105357 NA other downstream 1535588 21327192 ~ 21369204 (+)
LOC103046939 LOC107701771,LOC107725347,LOC107565259 other downstream 2463481 22255085 ~ 22283453 (+)
LOC103045705 LOC107725350,LOC107692700,LOC108439093,LOC107565240,LOC108441473 other downstream 2733653 22525257 ~ 22588961 (+)

Expression


Co-expression Network