G53515


Basic Information

Item Value
gene id G53515
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 5502395 ~ 5505248 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU60944
TCCTCAAAGCCAACCTCCAGAATCCTATCAGCCTCATCAATGATCAGACACTGGAGGTTCTTAAACATGAACCCAGGCGTGTTCTGTGGAAAGAAAGAGCGAGGTCAAGTATACTGTACAGACCCATGTGTCCAATCTGTTCACTGTAAAAGGTCTTACCTGCAGGTGATCGAGAAGTCTGCCAGGTGTAGCAACCACAATATTGACTCCATTTGCGAGTTTCTGGGCTTCAGCAGATCGATTGCTGCCTCCCATGATGAGGCCGTACGTGTGCACGTGATGCGTCATCAGCTCCTTCAGCACACCATATGTCTGCATAGCCAACTCACGAGTGGGAGACAGAATGACCACTCCAGTCCCTGAGAAACAGACCACAGGTTTGACTGACATCTCTACAAGGCAAAGTCAGAGAAAGCCAATATATTCAGTGTGCACTCACCATTCCTTGGCATGAATTTGAGTTTGTAGATAAGCTCAATGGAGGGAATCAGGAAAGCCAGAGTTTTACCACTTCCTGTTTTAGCTGCTGCCAACACATCTCTGTTGGACAAGAATGAGCACACATCCCAAACATTAATATGACAATTAAATGTGAGAATTACTGTACCACAGAAACCCTGCCATCTCTGATGCACTGCAGACTCACCTCCCTTCCAGCAGGGGGCGTATGGTCTTGTGCTGGATCTCAGTCATGGTTTCAAAGCCCATTTCTTTCACTCCCTTCAGTGTATTCTCACTGACCACTTCTGCCAAAGATGCAAATGACCTGTCCTCAAACGCACCTGTCAGACCAGAAGGAAGCTGTGGACCATCTTCATCACTATCATCCTCAGCTGATCCCTCTTTTTCATTTCCATTCTCTGCAAACTTCACAGGCTCTGCACATTCCCCCTCCTGCATTTCACTCTGTTGCTCTTCTCCCACCAATGCTTCCGTTGTCTCTTTAACTTCATCCTGCTTTTTGACCTTTTTCCCACCTAAATGAGTATGTGTATACATGTCAAATACTAGCATTAAATTGCATAATTGTAACTACATATTCACAACAATATTAAACACTCACTGGATGTTGAGTCTTCTGTGCCATCCAATTTTCTTTTCTTTTTCTTCTTGATTTTCTGTGAGGTTTCACCGCCCTCGGTGGAGACACTTTGCTGCTGTTTTTCAATGACTTTTGGAGCAGAATCACTGGTCACATCAGCTTCTTCCAGCACAACCTTCACCTCTGCCAGTAACGTTTTCTTCTTCTTCTTCCTTCTGAGATCTGAGCAGTTTCCGTTGTTTATTTTTTTCATTTCTCTTTTGAATTTTCTTGCGGAGAATTTTCATCTGCATGTCCGCCATGGCTGTACACAAACACGTG
>TU60945
CCCATTTAAATGAGCTGACAATTAGACAAACTAAACAATGCTCAACATATGACTCATTGCAGACAGTATTTATCATAAAACAGGCTGTGCCATGTCTACCTGTCAGACCAGAAGGAAGCTGTGGACCATCTTCATCACTATCATCCTCAGCTGATCCCTCTTTTTCATTTCCATTCTCTGCAAACTTCACAGGCTCTGCACATTCCCCCTCCTGCATTTCACTCTGTTGCTCTTCTCCCACCAATGCTTCCGTTGTCTCTTTAACTTCATCCTGCTTTTTGACCTTTTTCCACTGGATGTTGAGTCTTCTGTGCCATCCAATTTTCTTTTCTTTTTCTTCTTGATTTTCTGTGAGGTTTCACCGCCCTCGGTGGAGACACTTTGCTGCTGTTTTTCAATGACTTTTGGAGCAGAATCACTGGTCACATCAGCTTCTTCCAGCACAACCTTCACCTCTGCCAGATATGAGACACATACAACACATTTCATAAACTTCATCTTAAAAGAACAAGCATGTACACTCAATATGAGTAGATTTATGCATTGACGATGTCGACAACATGTTTCTCAATAAATTAAATAACACAATCAACATCATAATTACGTTTTAACTAAACCTATATGTCGTGCTAGGTTAAATACAACTAACTGAATTGTAAGACAAAACTTTACTAATGCTTTTAAAAGCGGTGTGATTATCACATGGTGGATCCGCGATAACGCCTGAATTAAGTATACGTCTCATTCATCTTTACAACAAAAGTGGAAAAATTACCTCTAACGTTTTCTTCTTCTTCTTCCTTCTGAGATCTGAGCAGTTTCCGTTGTTTATTTTTTTCATTTCTCTTTTGAATTTTCTTGCGGAGAATTTTCATCTGCATGTCCGCCATGGCTGTACACAAACACGTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU60944 False 1363 TUCP 0.45 3 5502395 5505248
TU60945 True 909 lncRNA 0.40 2 5502395 5503390

Neighbor

gene id symbol gene type direction distance location
CI01000009_05402729_05410456 NA coding downstream 91939 5402504 ~ 5410456 (-)
CI01000009_05367161_05370504 PTPLB, HACD2, DKFZP459B2333 coding downstream 131891 5365766 ~ 5370504 (-)
CI01000009_05362086_05363378 NA coding downstream 138314 5362042 ~ 5364081 (-)
CI01000009_05278137_05361256 ADCY5 coding downstream 140917 5277137 ~ 5361478 (-)
CI01000009_05190789_05192684 NA coding downstream 309505 5190494 ~ 5192890 (-)
CI01000009_05513478_05515588 NA coding upstream 9879 5513269 ~ 5515588 (-)
CI01000009_05571226_05587885 NA coding upstream 67111 5570501 ~ 5588015 (-)
CI01000009_05675971_05682578 NA coding upstream 172382 5675772 ~ 5683383 (-)
CI01000009_05724421_05725824 NA coding upstream 220451 5723841 ~ 5725834 (-)
CI01000009_05759177_05759509 NA coding upstream 255609 5758999 ~ 5759770 (-)
G53511 NA non-coding downstream 3400 5491811 ~ 5498995 (-)
G53545 NA non-coding downstream 25655 5474236 ~ 5476740 (-)
G53510 NA non-coding downstream 94051 5407998 ~ 5408344 (-)
G53503 NA non-coding downstream 108070 5393525 ~ 5394325 (-)
G53498 NA non-coding downstream 114731 5387321 ~ 5387664 (-)
G53514 NA non-coding upstream 3582 5506972 ~ 5508789 (-)
G53552 NA non-coding upstream 20254 5523644 ~ 5539688 (-)
G53556 NA non-coding upstream 35815 5539205 ~ 5546637 (-)
G53566 NA non-coding upstream 49500 5552890 ~ 5553101 (-)
G53916 NA non-coding upstream 81649 5585039 ~ 5596678 (-)
G52828 NA other downstream 1270926 4217420 ~ 4231469 (-)
CI01000009_03261739_03262843 NA other downstream 2240438 3261038 ~ 3262843 (-)
CI01000009_02885473_02893975 NA other downstream 2602988 2883688 ~ 2893975 (-)
G52410 NA other downstream 2939862 2551724 ~ 2562533 (-)
G55814 NA other upstream 2922431 8425821 ~ 8428012 (-)
CI01000009_08858198_08860555 NA other upstream 3354762 8856310 ~ 8860563 (-)
G59097 NA other upstream 6784827 12288217 ~ 12289518 (-)
CI01000009_13975122_13976026 NA other upstream 8471998 13975099 ~ 13978614 (-)
G59490 NA other upstream 8530174 14033564 ~ 14037873 (-)

Expression


Co-expression Network