LOC103046381 (LOC108429788)


Basic Information

Item Value
gene id LOC103046381
gene name LOC108429788
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 20281648 ~ 20287435 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007254852.3
TTGGACCCTTCAGCTGTGAGGAGCAGAAAGATCAGGACGCCAGCCATCATCCACCATGCAGCTGCTATCTCTGCTGTCTCTGATACTCAGCCTATTATGCTGCTGCTACACTGCTTCAGTGTTTGTAGGGCGGAATGAAGCCCATGGAGTCCTCACCAGGACCAAGCGAGCAAACTCTGGCTGGTTTGAGGAACTGAAGGTGGGCAACCTTGAAAGGGAATGCTTAGAGGAGAAGTGCTCTTATGAAGAGGCCAGAGAGGTGTTTGAACACACTGAAGCCACGaatGAATTCTGGAAAATTTACAACGTTAAAGACCACTGTCAGTCGAATCCATGTGAAAACAACAGCACTTGTTACCTGTTAAAGGAGTCCTATACATGCTTGTGTGCACCAGGTTTCAGTGGACGTAACTGTGAGCGTGtaataaAAGACATTCCTGACTCCTGTCTCCACAACAATGGAGGGTGTGAGCATTTCTGTGAGGAGAACAATGGTGAGCGCTTCTGTTCCTGTACAGACGGGTACTTCCTTGGGACAGATGGTCAAGCCTGCCTGACCCAAGAGACATTTCCCTGTGGTAAGGTGCCGCTCCTTTGGATTAATAGCACATATAGGAAGGCGCAGCAGGAGCAGGACCCAAGGGCTCGAATAGTCGGAGGAGAAGAATGTCCTAAAGGTCACTGTCCCTGGCAGGTGTTGCTGAAGTATGGAGAGAAGGGCTTCTGTGGAGGAGTGATTGTTAAGCCTACCTGGGTAATCACAGCTTCTCACTGTCTGGAGAAGCTTTTGGCCAAGTTTCTAAAGATCGTAGCagGTGAACACGACATTGATGTGAACGAAGGCTCAGAGCAGACAATAGAAGTGGAGGAGATAATCATGCATCCCAGCTACGTCCCAGAAACAGCAGACAGCGACATCGCCCTTCTGCGCCTGCGCCGCCCTATTGTATACAGCAATTATGTTGCACCCGTGTGCATTCCTCGCAAAAAGCTGGCTGAAAGGGAACTTTGGGCCATCCATATGCACACGGTCAGCGGGTGGGGGCGGCGCAGCGAAGGTGGGCCTACTTCACGTGTGCTCCGAAAGCTGGATGTGCCACGTATCCGCACGCAAGACTGCATCCAGGAAAGCAACATCTCACTGACTGCTAACATGTTCTGTGCTGGTTACATCGAGGGTAAACAGGACTCCTGTAAGGGGGACAGTGGTGGACCTCTTGTGACCCATTACAGGAACACCACGTTTCTCTTAGGTGTTGTGAGCTGGGGGAAAGGATGTGCCCGACCGGGACACTACGGCATATACACACGCGTGTCCAATTACCTAGAGTGGATCCACAAGCACATCTCAGCCCCTGCTgtcaatccaaaaaaaacaacataggATAAGTTTATGACCCTGTTTGCACTTCTGATTAATTTCTTCTGGGTTAAATCATATTAGGATACAATCTACATACAGTTAggtccataaatatttggaattGGTTTGGAATTGGTCTGCATGCCACAACACTggattttaaattaaagaaatgagATGTAATTGTAGTGTAGACTTCCAGGTGTAATTCAAATGATTGAACAAAAATATCTTAGAAAGCATTTAGGAATTACAACCATTTTTCTACACAGCCTCCTCATTTCAGTGGCTCAGACGTCAGTGGACAAATAAACTCAAATGCTATTTTATAGGTTCCATGggatattttttcattaatctaTCATCAGTTTAAATGTCTGGAGATGATTCCAGGTGTTTCATTCGCATTTGGAAGCTGTTGTTGTGAACCCACAACATGCGGTTAAAGAAGTTAAAGAAAGTAAAACAGACCATCATTAggcataaaaaagaagaaacccATCAGAGTGATAGCGAAATGATAgttaaatgtgaaatgtttgGATTGGCCAAATTAACAGTTTGGTACATTCTGAGAAAAAAGAGTGCATTGTTGAACTCTGGAACTCAAAAAGCCCTGGACCTTCACAGAAGACCACAGTGGGGGATGATTACAGAATTCTTTCCCTTAACAGCATCCATGTAAACAACACTCTCCAGAGTATCAGTATCTCAGTCTAGTATAAAGAAAGGCCTTAATGAAAGCGAATACAGAGGGTTCACCACAAGCTGCATTTCATTAATAGTAAG

Function

NR:

description
PREDICTED: coagulation factor VII-like

GO:

id name namespace
GO:0007596 blood coagulation biological_process
GO:0006508 proteolysis biological_process
GO:0005576 extracellular region cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0004252 serine-type endopeptidase activity molecular_function

KEGG:

id description
K01320 F7; coagulation factor VII

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007254852.3 True 2152 mRNA 0.45 8 20281648 20287435

Neighbor

gene id symbol gene type direction distance location
LOC103046085 NA coding upstream 1479 20271607 ~ 20280169 (+)
LOC103045776 NA coding upstream 11020 20258190 ~ 20270628 (+)
LOC103045165 LOC107751098,LOC108429813,LOC108258592,LOC107739159,LOC107739162 coding upstream 39302 20238645 ~ 20242346 (+)
LOC103043852 pou2f1 coding upstream 84415 20169926 ~ 20197233 (+)
dusp27 dusp27,LOC102309085 coding upstream 116457 20153405 ~ 20165191 (+)
LOC103027637 LOC108429819 coding downstream 3213 20290648 ~ 20312757 (+)
LOC103046697 NA coding downstream 27479 20314914 ~ 20323422 (+)
cul4a cul4a,LOC102780633 coding downstream 48397 20335832 ~ 20363691 (+)
lamp1 NA coding downstream 83989 20371424 ~ 20388362 (+)
tmco3 tmco3 coding downstream 176209 20463644 ~ 20488290 (+)
G105032 NA non-coding upstream 162 20280714 ~ 20281486 (+)
G105018 NA non-coding upstream 38293 20242905 ~ 20243355 (+)
G105017 NA non-coding upstream 43400 20237850 ~ 20238248 (+)
G105008 NA non-coding upstream 75898 20203194 ~ 20205750 (+)
G105007 NA non-coding upstream 78709 20202635 ~ 20202939 (+)
G105041 NA non-coding downstream 60884 20348319 ~ 20424575 (+)
G105044 NA non-coding downstream 106873 20394308 ~ 20397272 (+)
G105074 gas6,LOC107571980,LOC107573434 non-coding downstream 331355 20618790 ~ 20620441 (+)
G105079 NA non-coding downstream 361661 20649096 ~ 20652261 (+)
G105235 NA non-coding downstream 467858 20755293 ~ 20755532 (+)
nfkbiz nfkbiz other upstream 536724 19734226 ~ 19744924 (+)
G104656 pcdh8 other upstream 1358445 18919060 ~ 18923203 (+)
LOC111193547 NA other upstream 2862510 17406595 ~ 17419138 (+)
LOC103031769 prps2 other upstream 3142675 17119847 ~ 17138973 (+)
LOC103035065 nhlh2,LOC103035065,LOC108434665,LOC108258389,LOC107739819,LOC105019883 other upstream 3387056 16888386 ~ 16894592 (+)
G105276 NA other downstream 701838 20989273 ~ 21055483 (+)
G105312 abcb6,abcb6a,LOC107556273,LOC107750068 other downstream 731603 21019038 ~ 21028990 (+)
G105357 NA other downstream 1039757 21327192 ~ 21369204 (+)
LOC103046939 LOC107701771,LOC107725347,LOC107565259 other downstream 1967650 22255085 ~ 22283453 (+)
LOC103045705 LOC107725350,LOC107692700,LOC108439093,LOC107565240,LOC108441473 other downstream 2237822 22525257 ~ 22588961 (+)

Expression


Co-expression Network