lamp1


Basic Information

Item Value
gene id lamp1
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 20371424 ~ 20388362 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007254856.3
TCCTCACATGACTGGAACATTCCTCGCGCCgctgagagtctgagagagcggAGCTGCGCTTATTACACTGTTGAACGGAGCCGTAGTTTACAGACTTCAGCGGTAAAAACGAGCCGAATTTAAAGACGGATATCAGTCTGCGGGGAGTCGGAGCTGCGCCGTGACTGGAGATTAATTATTTACAGCGGAACAACATGAGCTGCAAACTACGACCAGCTATCGCCGCTCTGCTGGGTTGGTTGGCTGTGGCACATGCTGTATCATTCGAGGTGAAAGATGGGAATTCAACCTGTATTAAAGCAGAGCTCTCTGCCAACTTCACTATTACATACCCGGTAACCAATGGAACGAAAAAAGTGACTGTGCCGCTCCCGGCCTCAGCAGTAGTGGGCAGTGGTAGTTCCTGTGGCGACTCGGGGGTCTCTCCTCAGCTGTTGGCATCCTTTGAGGGTGGTCACTCACTAGgcctgtttttttccagagataaCAGTCAGTACAAGGTGGCCACCCTGAGTATGAGGTACAACCTGAGCGACAACGTCACCTTCCCTGAGTCCTCAGTCAAGGGAATCATTACCTCATCTACAAACACCTCAGGAATCTCAGCTCAGCTCAACACCACCTACAGATGTCTGAGCTTCAACTCCATCCGTCTGGAGGACCCCAACATAACCATTACCTTCTCCGACGTCCGGATGGAAGCATACATGCCCAATGCCAACCTCAGCACTAAGGagagtgtgtgtacagcTGATCTTCCTGCCACCACAGTGGCTCCTACACAGTCTCCCACAACCACGCCTGCCCCTGCTCCTCCCTCCAATCCAGAGCGTGGCAGCTATAACGTCACCAACATTAACGGCACTGTGTGTCTCCTGGCTAAAATGGGACTGCAGCTTAACGTCACCTACATCTCGAAGACTCAGAACAAGACTGTTCAGGGAATTGTGAACCTGCAGCCCAATAGGACGACTTTCTCAGGTTCATGTGAGGACACAACTGCCACTCTGATCCTGACAGATGAGCTTACCAACCTCACCTTCACGTTTACTCTGAACTCCACCAGCAAGATGTATCATCTGAGTGCTCTCAGTATGTCTGCCGCCTGGCCTGATATGCCTGCTCCAGTCACCCTGTCCAACAGCAGTCTGAACTACCTGCAGGGCTCGCTGGGCCGCTCCTACATGTGCAGGTCTGAGCAGATTCTTCCTGTGGTGGACAGCTTCTCTCTCAACACCTTCAGACTGCAGGTCCAGCCCTTTGGGGTCAACGGCAACCAGTTTGGAACAGCTGAGGAATGTCAGATGGACCAGGACAACATGCTGATCCCCATCATCGTGGGTGCTGCCCTGGCTGGACTGGTACTCATCGTCCTCGTAGCGTATCTGATTGGAAGAAAGAGAAGTCATGCAGGCTACCAGACCATCTGAACTCTCCACTAAAACCACCACATCCACCGGTCCGAATCTCTAGCGTTTTTTCCCCCCAATGGAGAAAACCACTGCTACTatactgactcactgactgactgggACCCTGCTGACAAAAGActggcctgtgtgtgtttgtgtgtttgtttctgtgtgtgtgtgcgtctgtgtatgcgtgtgtatgAATGGTTGTATGTACATTGTTCTTCCACTTTTTTCCCAGCTATCTAATGCTCTTGGGTCACTTAAGGGAAGAAGGCAACATCACCCAATTATTactaatcaatattttgtgtaaacCTGTCAGCTCAAACCTTTTTTGTATCCCAGATTGGCTcacagttcagagttcagacCTGAAATGCCTTTGTTTTGTCCATCTTATATCTTTAAACTTGCTTACTGGTTGTGGCTGATCAGGTTTGCATCGATGTATCTGCTTTTGAGAGGTTATTTTTTGAATGGAATTTTGTGAGTGATTTGTGTGTAAATAAGCGTTCAGAATTTTAAGTTATAGAGTGACTGACTTTGATGTTGCAAAGCTTTTTTCAACTCAGACTCCTGTTCCAGCTCTGAACTCCCTTTTATTAGCTACGTTAGCCTCACAACCCTATAGCAGAACTGACTGACTGGTCACCTACATTCAGAAGAAAAGGAATAATGATTGTGTTTAcatgcatcttataatccgaTTAGAATTAAATTACTCCACTTTTCTAATTATATTAAGTAGCCAAGTAAACCGAATAGTCAGACTTCTTAGGTCAGAGTATGGTTTTAAAACGGATTTAGATCAAGAAATCCAATAAAGAGACCTAGATTGTAGCTCAGTAATCATATTTCAGTTCATTCATGACTTTGGgtttagtgaaacatgatagaGTATGAACATTCCGAAATATGGCGCTTTTAGCCGATACTCCCAACAGGCTCACAGTGTTGGTTACTGGGGCATATTGTTGCACATGcaaagaaatcttttttttttaaccattaacaagctcaaagaatctccacacttcattggtagaattctgagagccctaatatttaaaacactAACTCCAGTCCCAAATGCTGTAGTTTCttttgtactgtgtgtataaacagtcctttttattaaaatgttttaaactgtcagggccctcagaattttACCAAAGAAGTGTagagagctactttgagctttaCTGACGTTTTTCTTTGCATAGGCAACGCTATGCCCCTATTACTAGCATTGTAAgactgttgggagcatcagttaAAAGCTCTGTATATAAGAATCCTTAGAAAATTGAGTTGAGCTATTCAATAAAGGTTTATAACCAATAacgtatatattttactaaACCCTTAGTCTATTTCACACCgtatttctcctttaagtatcTATTCATAGTTATCTATATGTGCATGAGCAAAAACAGACCCTGGTAGTGAAAATAAACAAGCAGCTTTTAATACAGCAAGATTTACTAAATATGATCTTCCTGAGGTGTAAAGTTTAAGATGTATGTTATATGTTTGTCACATTTTATTCTGTGAGACTATTGATGGGTGGCAAAGCAAAAAATGATAAACTGGTTTTCTATTA

Function

GO: NA

KEGG:

id description
K06528 LAMP1_2, CD107; lysosomal-associated membrane protein 1/2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007254856.3 True 3024 mRNA 0.44 9 20371424 20388362

Neighbor

gene id symbol gene type direction distance location
cul4a cul4a,LOC102780633 coding upstream 7733 20335832 ~ 20363691 (+)
LOC103046697 NA coding upstream 48002 20314914 ~ 20323422 (+)
LOC103027637 LOC108429819 coding upstream 58667 20290648 ~ 20312757 (+)
LOC103046381 LOC108429788 coding upstream 83989 20281648 ~ 20287435 (+)
LOC103046085 NA coding upstream 91255 20271607 ~ 20280169 (+)
tmco3 tmco3 coding downstream 75282 20463644 ~ 20488290 (+)
tfdp1 tfdp1 coding downstream 106105 20494467 ~ 20513140 (+)
grk1 grk1,grk1a,LOC107748333 coding downstream 130998 20519360 ~ 20530018 (+)
cenpe LOC107577987 coding downstream 144040 20532402 ~ 20564585 (+)
tmem255b tmem255b coding downstream 177767 20566129 ~ 20593330 (+)
G105032 NA non-coding upstream 89938 20280714 ~ 20281486 (+)
G105018 NA non-coding upstream 128069 20242905 ~ 20243355 (+)
G105017 NA non-coding upstream 133176 20237850 ~ 20238248 (+)
G105008 NA non-coding upstream 165674 20203194 ~ 20205750 (+)
G105007 NA non-coding upstream 168485 20202635 ~ 20202939 (+)
G105044 NA non-coding downstream 5946 20394308 ~ 20397272 (+)
G105074 gas6,LOC107571980,LOC107573434 non-coding downstream 230428 20618790 ~ 20620441 (+)
G105079 NA non-coding downstream 260734 20649096 ~ 20652261 (+)
G105235 NA non-coding downstream 366931 20755293 ~ 20755532 (+)
G105271 NA non-coding downstream 440006 20828368 ~ 20860880 (+)
nfkbiz nfkbiz other upstream 626500 19734226 ~ 19744924 (+)
G104656 pcdh8 other upstream 1448221 18919060 ~ 18923203 (+)
LOC111193547 NA other upstream 2952286 17406595 ~ 17419138 (+)
LOC103031769 prps2 other upstream 3232451 17119847 ~ 17138973 (+)
LOC103035065 nhlh2,LOC103035065,LOC108434665,LOC108258389,LOC107739819,LOC105019883 other upstream 3476832 16888386 ~ 16894592 (+)
G105276 NA other downstream 600911 20989273 ~ 21055483 (+)
G105312 abcb6,abcb6a,LOC107556273,LOC107750068 other downstream 630676 21019038 ~ 21028990 (+)
G105357 NA other downstream 938830 21327192 ~ 21369204 (+)
LOC103046939 LOC107701771,LOC107725347,LOC107565259 other downstream 1866723 22255085 ~ 22283453 (+)
LOC103045705 LOC107725350,LOC107692700,LOC108439093,LOC107565240,LOC108441473 other downstream 2136895 22525257 ~ 22588961 (+)

Expression


Co-expression Network