tfdp1 (tfdp1)


Basic Information

Item Value
gene id tfdp1
gene name tfdp1
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 20494467 ~ 20513140 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007254866.3
ACGTAGGACACCGCCAAGATCAGTTTGATGGCTCTCAGTAGTACAGTACACAGCTAGCTAGCCTAGCGCGCTTTATCTGTAATAAACAGCGCGGAATTCGGTGTTTTCTGCTGTTTTGCGCTCTGCTGAGTAATGGGAAGGGCATGAACCGAGGAAACCCAGCCAAGGGAAGACGTACAGGGATTGAAGACCTTCAGCCAAAAAGACCTTCTTGCAGCTTCTGCGAGAGACTGACAACATGGCAAAAGATGGTGGACTGAAAGAAACTGCAGAGCTGAAGGTTTTCACCACTCAAAACCTGACTCCTGGAAAAGGTACTGCTGTCCTGTCTCTTGTGACTGTCCACCCTTCATCAGTTACTGGAGTCAAGCAGATTGTGCCGAGAACTTTGGGGAGTGCCGGTGTTAATGTAGTGCAGCACATGGCGATTGGCACTCCCCAGAGGCCCAGCGCTCCAGGTGGTGTCCTCCTGACCAGCCCTAGAACACCCAGCGCCCAGTTCCTCACTCCACAGACGCAAGAGTCTTCTCCCTCTCCCTGGTCGAGCGGACGCGGTAGAAAAGGCGACAAGAATGGAAAAGGCTTGAGGCATTTCTCCATGAAGGTGTGCGAGAAGGTTCAGAAGAAAGGAGTCACCTCCTATAACGAGGTAGCAGATGAGCTGGTGGCAGAGCTGACTCCTggagacaatatttctcccgcTGAAGCTcatgtttttgatcagaagAACATTCGGAGACGGGTATACGATGCACTGAATGTCTTAATGGCCATGAACATCATTTCCAAAGACAAGAAGGAGATCAAATGGATCGGCTTCCCTACCAATTCTGCTCAGGAGTGTAAGGACTTGGAAGCTGAGCGGCAGAAACGACTTGAAAGAATAAAGCAGAAACAGTCTCAACTTCAGGAGCTTATACTACAGCAAATAGCCTTCAAGAATCTGGTAGAAAGAAACAAATCGGCAGAGCAGAAGAACCACAGACCTCCTCCACCCAACACGGTCATCCACCTGCCCTTCATCATAGTCAACACCAGCAAGAGGACGGTCATCGACTGCAGCATCTCGAATGACAAgTTTGAGTACCTGTTTAACTTCGACAACATGTTTGAGATCCATGACGACATAGAGGTGCTGAAGAGGATGGGCATGGCATTAGGGCTGGAGTCCGGCAAGTGTTCTCCAGAGCAGCTGAAGATCGCCCGGTCCTTCGTACCCAAAGCTCTGGAGCCCTACGTAATCGaTATGGCACAGGGACCCATAAGGCAGCTAAATGGAGGCTTTTTGCATACGACAGGtGATAATGGAGCTGTTCCAACTGTGGCCTCCAGCTCCAACAGTTCATACCACAGCAGCTCTCGCGATACCCCAGCGTCCTTCCtggaggatgaggatgaggaagaagaggaagaagactTTGATGACAATGATGACGAAGATTAACCTCTATGCcacgtttttctttttcttaccaGTCATCACTGCCTCCAACTTGTTAGCGTGAGGGTAGGGTTAAACAGATCATCTCACACTGTTTCTGGAGAGGTGTCGAGATTTCTGTTTTGAggtctaaagaaaaaaaaaaaaaaaacatgatttgttTGTATATGCAAGCTCAGCTCAGTGAGTTACGTCTTCACAATCTCCTAGAGCAAAGTGCGCAGCTGCTTTCTACAGAACCCCAGTGGTGCTTGTGTGAAATAGAACTTTTTTACCTAGTGTTTATTTACACCACTATTTTTGTTCAATAAACCACAATTTAGTGTTCTCATGGATtctgtaaaataatttttgtttaaaaaaaataacatttaattaataattgctTTGAGGCTGATTTAATTCTcatttaaattgtcattttcaTGCTCCAAAGATGTTCATTTCAGTTATCAGATACTTCTGTTCTTTACCTTCAGTTTAATGTGTCAGTATTGTATacattttgctttcttttttctcccccCATACAGATGACTATTTTTGATACCCTtggtgttttaaagtttttacacCGAACTCAGTGTCGAGCTTTTTGTAAAAAGTTTGTATTCTCACAGATCGACAGATGAGGAATGAATCTCAATCCAGGTTGTTTTATGTAACAATTCCAGTTTTTACACTCGTTTTGTTCAGTGGCACAAATATGCCGAGGAAAATCTACCTTTCTTATGAGTCTCataattaaacaaatgtttatGATACAA

Function

symbol description
tfdp1 Enables protein domain specific binding activity. Contributes to DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Involved in positive regulation of G1/S transition of mitotic cell cycle; regulation of transcription, DNA-templated; and transcription by RNA polymerase II. Located in cytosol and nucleoplasm. Part of RNA polymerase II transcription regulator complex.

NR:

description
PREDICTED: transcription factor Dp-1 isoform X1

GO: NA

KEGG:

id description
K04683 TFDP1; transcription factor Dp-1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007254866.3 True 2208 mRNA 0.45 12 20494467 20513140

Neighbor

gene id symbol gene type direction distance location
tmco3 tmco3 coding upstream 6177 20463644 ~ 20488290 (+)
lamp1 NA coding upstream 106105 20371424 ~ 20388362 (+)
cul4a cul4a,LOC102780633 coding upstream 130776 20335832 ~ 20363691 (+)
LOC103046697 NA coding upstream 171045 20314914 ~ 20323422 (+)
LOC103027637 LOC108429819 coding upstream 181710 20290648 ~ 20312757 (+)
grk1 grk1,grk1a,LOC107748333 coding downstream 6220 20519360 ~ 20530018 (+)
cenpe LOC107577987 coding downstream 19262 20532402 ~ 20564585 (+)
tmem255b tmem255b coding downstream 52989 20566129 ~ 20593330 (+)
LOC103029654 LOC108437114,LOC108258365 coding downstream 252602 20765742 ~ 20774329 (+)
LOC103029333 LOC108437114,LOC108258365 coding downstream 269930 20783070 ~ 20800531 (+)
G105041 NA non-coding upstream 69892 20348319 ~ 20424575 (+)
G105044 NA non-coding upstream 97195 20394308 ~ 20397272 (+)
G105032 NA non-coding upstream 212981 20280714 ~ 20281486 (+)
G105018 NA non-coding upstream 251112 20242905 ~ 20243355 (+)
G105017 NA non-coding upstream 256219 20237850 ~ 20238248 (+)
G105074 gas6,LOC107571980,LOC107573434 non-coding downstream 105650 20618790 ~ 20620441 (+)
G105079 NA non-coding downstream 135956 20649096 ~ 20652261 (+)
G105235 NA non-coding downstream 242153 20755293 ~ 20755532 (+)
G105271 NA non-coding downstream 315228 20828368 ~ 20860880 (+)
G105270 NA non-coding downstream 358651 20871791 ~ 20909285 (+)
nfkbiz nfkbiz other upstream 749543 19734226 ~ 19744924 (+)
G104656 pcdh8 other upstream 1571264 18919060 ~ 18923203 (+)
LOC111193547 NA other upstream 3075329 17406595 ~ 17419138 (+)
LOC103031769 prps2 other upstream 3355494 17119847 ~ 17138973 (+)
LOC103035065 nhlh2,LOC103035065,LOC108434665,LOC108258389,LOC107739819,LOC105019883 other upstream 3599875 16888386 ~ 16894592 (+)
G105276 NA other downstream 476133 20989273 ~ 21055483 (+)
G105312 abcb6,abcb6a,LOC107556273,LOC107750068 other downstream 505898 21019038 ~ 21028990 (+)
G105357 NA other downstream 814052 21327192 ~ 21369204 (+)
LOC103046939 LOC107701771,LOC107725347,LOC107565259 other downstream 1741945 22255085 ~ 22283453 (+)
LOC103045705 LOC107725350,LOC107692700,LOC108439093,LOC107565240,LOC108441473 other downstream 2012117 22525257 ~ 22588961 (+)

Expression


Co-expression Network