LOC103024565 (LOC108434738)


Basic Information

Item Value
gene id LOC103024565
gene name LOC108434738
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 19008566 ~ 19012966 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007254869.3
TGGCCGACACCTTTCTACACTTCTCATGAGCTTTCCGAGAAAGAGCACTTGATCCGTTTTAGATGGCCTATCAGTAGAGCTTACAAGAGAATTCTGTTCTTCAGTACTTGAGGTACAAATAGAGGTGAAGAAAATGAAGATGTTAGTAAGTTTTAGCTTAGTTGTAGTCTTTGGAGTTTGGGCGGCGCGAGGAACAACCACAAAGTACTACACATACGAGGAGGACGCGCCAGGAACCTTCATCGGCAATCTTTCCATGGATCTGAACATCGACCCTTCTGAAGACCCGAACACGAGCTTCCGATTCATGCAAGAGGGTAATTCGTCCCTGATTTACATGCATAAGAGCGATGGGGTCCTCACGGTGGCGGAGCGCATCGACCGCGAGAGCCTGTGCCAGCGCGCGCCGCAGTGCGTGATCACTTTTGACGTGGTGGTGTTCTCCAAAGAGAAGTTCAACCTGATCCACATCGAGATCCACGTTCGAGACATCAACGACCACgctcctgtttttctgcgcaacGAAACACAGCTCGAGATCTCCGAGGACGTTCCCGTGGGCGCGCGCTTTCCCATAGAGGTGGCCAGTGACTCGGACGTGGGCAGCAACTACATCCAGAGTTATCAGCTCCTGCACAACAGTCATTTCGGCATTGAGGTAAAAACAGGAGAAGACGGCGTGAAGGTCGCGGAACTCGTGCTGGTCAAAGAGCTGGACAGGGAGGTGGAGGATTCCTACATGCTTCAGGTGACCGCGAGCGACGGTGGAAGCCCACCCAAGTCCGGATCCGTGACAGTGCACGTCAAAGTTTTGGACTCCAACGACAACAGCCCACAGTTCGAGCACAGCACCCTTAAAGTGGAGCTCCACGAGGACGCACCGGTGGGTTTCCTTTTACTAAAGGTGCAGGCGTTCGACCCGGACCACGGCACGAACGGGGACGTGCGCTACGACTTTGCGGAGGGCGTGTCCGACGAGATCAAGAGCACCTTTGAAGTAGACCCGATCAGCGGGGCGCTCACCATGAAGTCCACGGTAGACTTCGAGATTAGAAGGTCCTACGAGGTGAACCTACAGGCGTACGACCTTGGGGCGAATTCCTTGCCATCGACCTGTGCCATCATCGTAGACGTCGTGGACGTGAACGACAACGCGCCGGAGATTAAGATCAAGCCGATGACTTCAACAAGCCAAGAGATGGCCTACATCACTGAAGCGGCGGCGGTGGAAAGCTTCGTGGCTCTCATCAGCACCACGGACAGGGACTCAGGTGCCAACGGCTACGTGCGCGTGGGTCTACACGGGCACGATCACTTCCGACTGCAGCAGGCCTATGGCGACAAGTTCATGATTGTCACGACCTCAGCTTTGGACAGAGAAAAAATCCCTGAGTACAACCTCACCATTGTGGCTGAAGACCTCGGTTCCCCACCATTCAAAACTTTTATGCAGTACACCATTCGAGTTACAGATGAGAATGACAACCCCCCACAGTTCAGCAAGCCCGTCTATGAGATCTCAGTGATGGAGAACAAAGCACCAGGTTCCTATATTGCTACACTGGTGGCTCGTGACCCTGATGAGGCAGCCAACGCTAAGGTCACCTATAAGCTGATTGATAACGAAGTGGAAGGAATCCTGATGAGTTCATTCCTCTCAGTGGACTCTACCTCTGGCACTCTCTATGCTGTGAGGTCTTTGGACTATGAGTATGTAAAGCAGATTGAGGTTGCCATTCAAGCCACAGATGGAGGCTCCCCTTCGCTGTCAAGCACAGCTCTGGTCAAGGTCAGAGTGGTGGATGAGAATGACAATGCGCCTTTTATTACCCATCCCATTCTCATCAACAGCTCAGCAGATGTGCCTCTACCCTTCAATGCACCAGCTGGTTACATTGGCCTGAGGGTCAAAGCCCGCGACATGGATGACGGTGTGAATGCAGAGCTGTCTTACACTATTGTAGATGATAAGCAATCATTGTTCTCCATGAATAAAAACTCTGGCGAGGTTGTGCTAAAGAACAGCCTGACATTTGAGTATGGGGATGTGCTGGAGATCACAGTAGTGGCAAGCGACCATGGTAGGAACCCTCTGTCTTGCACAGCCACCATCCGCTTTGTGGTGTCAGATGTCCAGCCCTTAGAGGAGCAAGTGGTGGTGTTTCTCGAGGCAACTGAAGAAAAGAATGAGCCTGACTTTGATGCTTCCATCATTATCATAGTGCTTCTGGCCATTGGGTGTGCCACACTGCTGGTTGCCATTGTGGCAGTGGCCTTGTCACGCAGGAAAGATCCAATGGACATCACCATCAGCAAATTGGAGCGTGGCACTAAAGGAAACTTTAAGAAGTCTCCACTGCCGTCACATAGCATCGACTCTTCAGACTCCGCCAGCTTCTCTGGAGGCAGCAGCACTGTCACAGAGCACATTTCCACTTCACAGGACGAGTCATCTTATTCTTATGAGGAGGAGCACAGCAGAGACTCTGACAATAAGGTGTTTCGACCACTCTTGAACAAGGCCAATTTTGAGCCGGTTACCATTTGGCAAGGAGACAGATACTCTCTTCAAATGAGTGGGATTAGGTCCACTGACCAAACAAGTGTAAAAGACAGCGGGAAAGGAGACAGCGACTTCAATGACAGTGACTCTGATGCTAGTGGAGAAGCCAGTCGAAAAATGACCGCCATCAGCCATCAGCGAGCAAGCAGTTCATTCCACACCGCACCAATGGATGTAGCCTGCAGAACCAGAGAGATCCCAacacacaccagcagctcaCACTTGGGCAATGGTGGATACAGTATAGCATACCGGACACCAGTCTATGGCCACCATCCAGCTGCCAGCCACCAAGGACCAACCTGGAGGGACTACAGCTATAACCCAATCCTTTCTCAAGCCTCACAGCAGCCTCCAGCACCCATGTGTCATAGAATGGGGACACTCCCATCCCAGCATTATTATTACCAGCAGAATGCAATTgctcagaaaaacagacaaGCCATATCCACCACAGAACTGATGACAGACTCTATTGCCACACCTGTGACATACTTTTAAAGCATACTTTTGACTGCATTCACCGGGCTTAGCTGAGAGCTTAACAACAAAAGCAGGCCTTTCAAGACTGTGAGCTCATCTTGCATTTCAGGCTTAACAACTTCAGATTTAAATGCTGCtatatttatggtatttttatcaaccattgttttgttttgtttttgtattatattctgtatataatTTTTGAGCCTAGCATTCTGCTTCATTTGGCCTGTCAAGAGGGTCGTTGTATTTTGTAATCAGTGTAAATATCTGCTATGTGAATATGTGTAAataatctgttttatatttattgacaTCACATAGATGTACTTgtgaataaaatttaaaaatgaaacaa

Function

NR:

description
PREDICTED: protocadherin-8-like

GO:

id name namespace
GO:0007155 cell adhesion biological_process
GO:0016020 membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007254869.3 True 3407 mRNA 0.49 4 19008566 19012966

Neighbor

gene id symbol gene type direction distance location
sugt1 sugt1,LOC104941757 coding upstream 113035 18860729 ~ 18895531 (+)
LOC103031957 LOC103031957 coding upstream 150203 18827279 ~ 18858363 (+)
LOC103031642 ednrb,LOC108434743,LOC105911940,LOC106569465,LOC107658690,LOC107566659 coding upstream 200404 18789523 ~ 18808162 (+)
mid1 mid1,LOC103030906,LOC106575281,LOC106574413 coding upstream 265924 18642708 ~ 18742642 (+)
arhgap6 arhgap6 coding upstream 441852 18404506 ~ 18566714 (+)
LOC103033226 NA coding downstream 1440 19014406 ~ 19022921 (+)
LOC103024880 NA coding downstream 20439 19033405 ~ 19050916 (+)
LOC111193549 NA coding downstream 44432 19057398 ~ 19067487 (+)
LOC103025512 fgf14,LOC108434733,LOC108258297,LOC105911936 coding downstream 155917 19168883 ~ 19309236 (+)
LOC103035666 LOC108434719 coding downstream 396341 19409307 ~ 19411213 (+)
G104660 NA non-coding upstream 52513 18941098 ~ 18956053 (+)
G104658 NA non-coding upstream 78173 18930035 ~ 18930393 (+)
G104588 NA non-coding upstream 359491 18648215 ~ 18649075 (+)
G104504 NA non-coding upstream 435032 18569451 ~ 18573534 (+)
G104534 NA non-coding upstream 497924 18447789 ~ 18510642 (+)
G104666 NA non-coding downstream 14186 19027152 ~ 19029365 (+)
G104680 NA non-coding downstream 18051 19031017 ~ 19031311 (+)
G104702 NA non-coding downstream 105688 19118654 ~ 19120266 (+)
G104706 NA non-coding downstream 134738 19147704 ~ 19150962 (+)
G104712 NA non-coding downstream 192460 19205426 ~ 19205714 (+)
G104656 pcdh8 other upstream 85363 18919060 ~ 18923203 (+)
LOC111193547 NA other upstream 1589428 17406595 ~ 17419138 (+)
LOC103031769 prps2 other upstream 1869593 17119847 ~ 17138973 (+)
LOC103035065 nhlh2,LOC103035065,LOC108434665,LOC108258389,LOC107739819,LOC105019883 other upstream 2113974 16888386 ~ 16894592 (+)
LOC103037450 NA other upstream 2434133 16555694 ~ 16574433 (+)
nfkbiz nfkbiz other downstream 721260 19734226 ~ 19744924 (+)
G105276 NA other downstream 1976307 20989273 ~ 21055483 (+)
G105312 abcb6,abcb6a,LOC107556273,LOC107750068 other downstream 2006072 21019038 ~ 21028990 (+)
G105357 NA other downstream 2314226 21327192 ~ 21369204 (+)
LOC103046939 LOC107701771,LOC107725347,LOC107565259 other downstream 3242119 22255085 ~ 22283453 (+)

Expression


Co-expression Network