LOC103027637 (LOC108429819)


Basic Information

Item Value
gene id LOC103027637
gene name LOC108429819
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 20290648 ~ 20312757 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007254879.3
GTGGAGTGGTGTTGACCTCCACAGCTGCTCTGCTCAGCTCTGAATCATGAAGACCctcacgctgctgctgctgctgctggcctgTTTCTGCCACCAAATATCCGGGAAAGTGTTCCTGAGGAGCGCGGACGCTAACGCGCTGCTGCGGCGCTCCCGGCGCGCGAACTCGGGCTTCCTGGAGGAGCTGAAGCCCGGGAACCTGGAGCGCGAGTGTCGAGAGGAGATCTGCGACTACGAGGAGGCGCGAGAGGTCTTCGAGAACGACGATAAAACGAAAGCTTTTTGGCTGACATACCATGCCCGGGAGCCGTGCTTGACCAACCCATGCAAAAACAATGGGACTTGTATATATTTGGGAAAGTCCTATGTTTGCCAGTGCCTGGAGGGCTTTGAGGGAAAATACTGTCAagaagTTTTTGAAGACACTCTGAAGTGCCTGTATCTAAATGGTGGCTGTGAGCACTTCTGTGATGGTTCAGGCCCCAGGCGGAAATGTTCATGTGCCTCGGGTTATTCTCTTGGAGTGGACGGAAAGACCTGCATTGCACAAGTCCAGTATCCCTGCGGGAGGGCACCTCTTCAGATGAATCAGACAGATTTACCACGAGCAGTTAGTGGAAATCAGTGCCCTAAAGGCCACTGCCCCTGGCAGGTCCTGTTGGATTATAAAGGAGAAAGTCTCTGTGGTGGAGTTTTAGTGGATGCCAGTTGGATCATTACTGCTGCTCACTGTGTGCATGAAAAAGATATAAATCATTTGAAGGTTATAGCAGGCGACCATAATATTGACATAATGGACAGCACAGAGCAAGCTTTTCCTGTAAGCAGCGTGATCATCCACAAGGACTACGACCCTGtgtcattggacagcgaccTGGCTCTTTTGCGGCTACGTGATCCAGCTACGTTTTCACCTCACGTTGTCCCTGTCTGTTTGCCAACATTTCAGTTTGCTGAGACAGAGCTAGCCGCTGTCCGCTTCCATACTGTGAGTGGATGGGGCCAGCGGACAGAAGGGGGTAACGTCCGGGGCTTTCAGGGTCCCAGAGGCCCAGTTTCCCCTGTGCTACGCAAGCTTGCTGTACCAATCTTGTCCAAGCCGCTGTGTGCTGTTAAGAGTGGGGTTAATATCACTGATAACATGTTCTGCGCTGGGTATTTTGAGGGCAGTCAGGAGTCCTGTCGAGGAGATGACGGCAGCCCTCTAGTCACTAAGTATGAAGACACTACCTTTCTAACAGGGATAGTGTCCTGGGGTAAGGGCTGTGCCCATCCAGGATTCTATGGGATATACACCAAAGTTTCCAACTTTTTAGATTTCATTCAGCAGGGCATATCCACTCCAGCTGCCAAGCTAGACACACTCAGCACGAGTCTAAATGCTTCAGTCACAGCAGCTCCTCCTCTtgaacaggcaaaaaaaaagattaaaCCTCCTGTGTCTGCAGTCCAGAATTCACTCCTCTCTTATAGAAACGCGCCTTGTGATAAAAAACTTGCCATGTTTTGCATTTTGAaatccttcttttttcttcttctcgtACATTGTGCCACTTCTGAGGTATTCCTCCAGGACAAGGATGCCAACCAGGTCTTTACTCGGAAGAGACGAGCTAACAGCGTGTTTGAGGAGTTTAAAAAGGGTGACATGGAGCGAGAGTGCAGAGAAGAGAGGTGCAGCTATGAGGAGGCCCGCGAGATCTTCGAGAACAATGAAAAGACGgATGAGTTCTGGAATGTTTACTACGACGGAGATGCATGCCTATCCCAACCATGTTTCAACAATGGTGTTTGCAAAgatggaataaataaatatatctgcTTCTGCCCTGAACTGTTTCAGGGCTACAACTGTGAGATTGttataccAATGCTGTGTGAAGACAAGAACGGTGGTTGTGAGCACTTCTGCAATGTGGAGCGCAATACTGCAGTCTGTTCATGTGCCAAAGGCTACAAACTGGCTCCTGATGGAAGGTCTTGCAGATCTGATGATCCCTTCAAATGTGGTCAAGTGCTTCCCAAGAACACCCGAAGTCTCCTCACACATCATGATGTGGAAAACATCACTGTTACTACCAATAGCACTGGCCATCCCAACATCATAAATAGTACCAAAGATTCTGCGAAATCCCCCACCAAAAAGGCAGCCTCAAATTCCACTCAGACAGATCCAGATAGCTTGTTTAGCTTGCTTGGGTTTGATGAAGATGAACTCAGTTCACATGTAATAGAGGAACCAGTGATTCCAGAAAGGTCTGGTGACACAAGGATTGTCAATGGGGAAGACTGTCAACCTGGAGACTGTCCGTGGCAGGCCCTGCTGGTGAATGAGGAGAAAATCGGATTTTGTGGAGGGACCATCCTGAACACATACTTCATTCTGTCTGCTGCCCACTGCATGAACCAGTCTCGCTCCATCACAGTTATTCTAGGTGAATTCGACACCCTGACCAGAGAAGGCCGTGAGGTGACCCATGCAGTCGACCAGGTTCTGGTCCACATGAATTACGTCCCCGAAACCTACCACAATGACATCGCTCTCATCAAGCTAGTCAAGCCCATCACCTTCACCAAATACATCCTCCCCGCCTGCCTGCCTGAACGCGACTTTGCAGAGCGTGTGCTCATGCAACAAGAAGACGGCCTGGTCAGTGGCTTTGGCCGTGTCTTCGAGGGTGGCCCACAGTCCACCATCTTGCAAAAGCTGACCGTGCCCTACGTCGACCGAGCCACCTGCATGGAGTCCACCAAGTTCAAGATCTCTAATCGCATGTTCTGCGCTGGTTATGACCAAGAGACCAAAGACGCCTGCCAGGGCGACAGCGGCGGACCGCATGTCACCAAGTACAAAAACACCTGGTTTGTGACGGGGGTGGTGAGCTGGGGTGAAGGTTGTGCTCGGAAGGGAAAGTACGGCGTCTACACGCAGGTGTCCAAGTACATCAAGTGGATCGAGATGGTCATGGACAAGGTCATGCCCAAAACTGGAGCTTCAGGAAAGGCAAGAAAGAAGAGACAGGTCCTTGGGTATATGCCTGTGATACCAATGTGATAGAAGTTCATCCACAAACTGAGACACATATAAGAGATGCATGCaaatcaattaaataacaactaaataaagattCTTTATTGATTCA

Function

NR:

description
PREDICTED: coagulation factor X-like

GO: NA

KEGG:

id description
K01314 F10; coagulation factor X

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007254879.3 True 3143 mRNA 0.50 16 20290648 20312757

Neighbor

gene id symbol gene type direction distance location
LOC103046381 LOC108429788 coding upstream 3213 20281648 ~ 20287435 (+)
LOC103046085 NA coding upstream 10479 20271607 ~ 20280169 (+)
LOC103045776 NA coding upstream 20020 20258190 ~ 20270628 (+)
LOC103045165 LOC107751098,LOC108429813,LOC108258592,LOC107739159,LOC107739162 coding upstream 48302 20238645 ~ 20242346 (+)
LOC103043852 pou2f1 coding upstream 93415 20169926 ~ 20197233 (+)
LOC103046697 NA coding downstream 2157 20314914 ~ 20323422 (+)
cul4a cul4a,LOC102780633 coding downstream 23075 20335832 ~ 20363691 (+)
lamp1 NA coding downstream 58667 20371424 ~ 20388362 (+)
tmco3 tmco3 coding downstream 150887 20463644 ~ 20488290 (+)
tfdp1 tfdp1 coding downstream 181710 20494467 ~ 20513140 (+)
G105032 NA non-coding upstream 9162 20280714 ~ 20281486 (+)
G105018 NA non-coding upstream 47293 20242905 ~ 20243355 (+)
G105017 NA non-coding upstream 52400 20237850 ~ 20238248 (+)
G105008 NA non-coding upstream 84898 20203194 ~ 20205750 (+)
G105007 NA non-coding upstream 87709 20202635 ~ 20202939 (+)
G105041 NA non-coding downstream 35562 20348319 ~ 20424575 (+)
G105044 NA non-coding downstream 81551 20394308 ~ 20397272 (+)
G105074 gas6,LOC107571980,LOC107573434 non-coding downstream 306033 20618790 ~ 20620441 (+)
G105079 NA non-coding downstream 336339 20649096 ~ 20652261 (+)
G105235 NA non-coding downstream 442536 20755293 ~ 20755532 (+)
nfkbiz nfkbiz other upstream 545724 19734226 ~ 19744924 (+)
G104656 pcdh8 other upstream 1367445 18919060 ~ 18923203 (+)
LOC111193547 NA other upstream 2871510 17406595 ~ 17419138 (+)
LOC103031769 prps2 other upstream 3151675 17119847 ~ 17138973 (+)
LOC103035065 nhlh2,LOC103035065,LOC108434665,LOC108258389,LOC107739819,LOC105019883 other upstream 3396056 16888386 ~ 16894592 (+)
G105276 NA other downstream 676516 20989273 ~ 21055483 (+)
G105312 abcb6,abcb6a,LOC107556273,LOC107750068 other downstream 706281 21019038 ~ 21028990 (+)
G105357 NA other downstream 1014435 21327192 ~ 21369204 (+)
LOC103046939 LOC107701771,LOC107725347,LOC107565259 other downstream 1942328 22255085 ~ 22283453 (+)
LOC103045705 LOC107725350,LOC107692700,LOC108439093,LOC107565240,LOC108441473 other downstream 2212500 22525257 ~ 22588961 (+)

Expression


Co-expression Network