LOC103030825


Basic Information

Item Value
gene id LOC103030825
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 17322245 ~ 17325366 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007259033.2
TCCgctgcgcatgcgcagtgcgtgtgagtgagtgagcgtaTGTTGTTGTGGTGGTCGGGCGGCGGGATGAACGCGTTTGAGAGGAAGCTGGCGGAGCTGGTCCGCTCCTACCCGCACCTGTACGACCGCTCGCGCAGGGAGTTCAGAGACGTGCACGTGTTCGCGGACTCGTGGCGGGAAATCGCCAATAAGCTGGGGGGCGACGACCCGGTGGAGTGTAAGGTAACGTGGAGCAACCTCCGCAAGAAGTTCTCCAAGGCCAGGAAGAGGATGATCTGCAGGAGCGGGGGGCGAGCCAAAGACCAGACCCCCAAACGATACAAAGAACTGTCCTGGCTCAACCAGTTCGTTCACCACAGACACATCCCCACAGACCCCGCCATCACCCTCACAGGACCCCCCATCACCCTCACAGGACCCCCCATCACCCTCACAGGACCCCCCATCACCCTCACAGGACCCCCCATCACCCTCGCAaacagagtgtgtgagagccTGGTTGAAACCACTGATCCTTCTTTTGACACATCAATGAATGTAAAACTGGAGCAGCCGGAGGACGAGCGGGAGCCGTTTGATATCGTATGTATAGAAGACTCCCCCTCGTGTTCATCCACAGCAGAGTCGAGCTCCAGCATGCTGCTTCCGTCTCATGAGAATAGAACACGCAGACGGAGCACTACTGATTCAGAAATCGCAAAAATGTTTTGTGAGCTGGAAAGATTCAAAGCTCCAGACTCGTCCGACGCCCATGACCGATACGTTCAGACAATTGCTGACTTCATGCGGGGACTGTCCAGGATACGCTGCGCCCATTTTAAGAAGCGTGTAAACGATATTATGTATGAAATGGAGCTGGAACAGCTTCATGAATCTGGATTGTAGCTTTCTGTCGGTATTCTATTTATATcatacagtttttttctgtagaCATGTCTGTTGAAATAAacgttttttattgttattgtgatatacattgttttttttttattatttctgacTGTGCACTACAATTGTATTTTGCTCATGGCAAATAAAAGCATCTTAAATTTGCCAGCA

Function

GO:

id name namespace
GO:0044260 cellular macromolecule metabolic process biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007259033.2 True 1059 mRNA 0.51 2 17322245 17325366

Neighbor

gene id symbol gene type direction distance location
map4k4 map4k4,LOC108258915,LOC106574534,LOC106575325,LOC107668172,LOC107588849,LOC107707082 coding upstream 5042 17213834 ~ 17317203 (+)
lonrf2 lonrf2 coding upstream 122630 17183013 ~ 17199615 (+)
chst10 chst10 coding upstream 172637 17142533 ~ 17149608 (+)
LOC103032094 NA coding upstream 205024 17113310 ~ 17117221 (+)
LOC103032412 gk,LOC107742635,LOC107700103,LOC107667651 coding upstream 212685 17081201 ~ 17109560 (+)
LOC103032976 si:dkey-1h24.2,LOC108434752,LOC108258345,LOC107707829,LOC560392 coding downstream 99577 17424943 ~ 17473397 (+)
ing1 ing1 coding downstream 567395 17892761 ~ 17896437 (+)
hsf2bp LOC106595116 coding downstream 609493 17934859 ~ 17944725 (+)
LOC103027494 NA coding downstream 624655 17950021 ~ 17962718 (+)
gemin8 gemin8 coding downstream 672949 17998315 ~ 18006511 (+)
G104177 NA non-coding upstream 139707 17182296 ~ 17182538 (+)
G104162 NA non-coding upstream 274505 17046772 ~ 17047740 (+)
G104151 NA non-coding upstream 387762 16927224 ~ 16934483 (+)
G104144 NA non-coding upstream 461043 16860988 ~ 16861202 (+)
G104082 LOC107662997,LOC107757412,LOC108434698,LOC107707084 non-coding upstream 634872 16682740 ~ 16687373 (+)
G104183 LOC103030517,LOC108434725,LOC100705727,LOC101474240,LOC102192248,LOC103374257,LOC106510766 non-coding downstream 29063 17354429 ~ 17356491 (+)
G104190 NA non-coding downstream 156758 17482124 ~ 17485186 (+)
G104196 NA non-coding downstream 271782 17597148 ~ 17597444 (+)
G104204 NA non-coding downstream 376321 17701687 ~ 17701919 (+)
G104363 NA non-coding downstream 536269 17861635 ~ 17861860 (+)
LOC103031769 prps2 other upstream 183272 17119847 ~ 17138973 (+)
LOC103035065 nhlh2,LOC103035065,LOC108434665,LOC108258389,LOC107739819,LOC105019883 other upstream 427653 16888386 ~ 16894592 (+)
LOC103037450 NA other upstream 747812 16555694 ~ 16574433 (+)
col17a1 col17a1,LOC108434660,LOC107684270,LOC107583183 other upstream 814458 16463938 ~ 16507787 (+)
G104000 NA other upstream 864036 16451175 ~ 16458209 (+)
LOC111193547 NA other downstream 81229 17406595 ~ 17419138 (+)
G104656 pcdh8 other downstream 1593694 18919060 ~ 18923203 (+)
nfkbiz nfkbiz other downstream 2408860 19734226 ~ 19744924 (+)
G105276 NA other downstream 3663907 20989273 ~ 21055483 (+)
G105312 abcb6,abcb6a,LOC107556273,LOC107750068 other downstream 3693672 21019038 ~ 21028990 (+)

Expression


Co-expression Network