lonrf2 (lonrf2)


Basic Information

Item Value
gene id lonrf2
gene name lonrf2
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 17183013 ~ 17199615 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007259034.3
ctcggtgtgttttttttgtactgagCGAGAGGACGGTCGTGTCTGGGTCCGTCTGATCCATTCAGCTTTATAAAAGTACCTTTTTGATGGAGCTTAGTTTTCCTTTTGTGTGAGGTGACTTCGCCGTGTCGGCGCCCGCGCCGTTCAGGATGGGAAAGCGGAGTTTCGGGGAAAGACCGGCGGGGAGAGACGAGCGGCCGGGGAAGCTGAACTCAGCGCCGCAGGTCCTGAGAGAAGGAAGGGGGAGCTCGCCTGATTACGCAGAGCACAGTTTACTGGAGACTTCAGATCTTATATAAAACACTGAGGCGAACATTTTTACCTTCCTACGTTTTTACTTTCTCGTTTAAACAGACGTGAGAACTCGGGGCGAACGTTAAACccgctgttgttgttgttggttgtTGTTCGGTTAACTTGACGCTACGTCGTGTTGGTTGCTTCGTGTTATTTGTTTATAGCCTGttagtaagctagctagcttataaCCTTTAGCTAACGTTAGGTAACTAACCTTGTTCAAACGCTAAGACTGAATAAGAAACACttagttttttgtatttaacagCAAACCTAGTTTTGTTTGTAGGTTAACTAGATAAACTATAGCTAgataacaacttttttttttaccaaattaacgcaagctaactagttaacgtTAACTGTtggaccggtgttctgtcgagttatgctacccttCAATATGTGCTTGTAACtgacactgcgcatgcgctgacacattgtttagtttttttcattgggtgcatttatttaatttttttctaaaattcctCTTCGCGTTTGCGttgaacattttcatttttttgggaTTTGTGGCGTTTATCTTTTATCAAAATAGCATCCCTACTGTTTAGTTTGGGTTTATTTAGATCCTCCTATGGATATACTTAAACTATGGTAGCACGCTTTAACAAGAAAACACAAATTGACAGGACACCGGAGCTTTCAGGGCCTTGATAACCTCACCTACCACAGTCACAGTTCAGCCTACACATGTAACTGAGAAACTTCAATGGCTTGGGCTGTGTTGTGCTATTTCTCTAGAGTAGATAGTGTTTATTTAGGTGTTGATATCATTGTTAATAACCGTTTTAATTCGGGTTTAAAGTGGTTAAGTAGTCCACGATAGTGTGAGCAGAGCTTAATTAAGGTTAGTGCTAGGCTAAAAGGAACCTTGACCTGCGATTGAGTTAGTTAACTAGATATTCAGTTTCATGACTGAAAGCTGCCAACTAAAAAATACTACATAGGTTGGCTAGCTAACTAAATAGCTAAAAACGTCtgcacttttttagtttttaaaaattaatttagctagctatttaaCTATTTTGTTCAATCACATTCGTGGTTCAAACTCAGTTATTTAGGTTAGCGTTATCTAAGTTAAAAAATCATAATGGAAACCAGCGTCCAGTCGTCCGCTCACTCCGAGCACTTCCAGCAGCACGAGTTGTCCAACCCCAGCGCCCCGGGCCTCTGCCCAGAAATGCTGGAGGTGGCCGAGGAGGCTTGTCGGGCTGGTGATTTCGACCTGGCCGTCGAGATCTACTCCTCGCAGCTGACCGAGCTCCGGCAGCCTGACCGCGGCTTGTGCCTGCGGAAAGCGGACGCTCTGACTAAAGGTGGCCGCATCCCTGAGGCGCTGGACTCGTACCGAGCCGCGGCGCAGGTCCGCCGGCTGCGGCCCGAAGAGCTCGGGCTGCTGGTGGAGAGCATCACCCGGGCTGTCCGCCTCAAGGAGCTCGGGGAGGGCTGGAAGCCGAAGACGGCCGGGAGCaacagtagtagcagcagcagcagtgggtGCAGCGGTGGCTGCAACGACCTGGAGGAAGAGGAGCATCAACAACAGCAGCCGCTTGACCTCTTCTCTTGCCATATCTGCAGGTGTCTGCTGGTGGACCCCACCACCCTGGAGTGCGGCCACACATTCTGCAAGCGCTGCCTGGAGGAAGACCCCGCATTGAAGCAGTGCAAGTCCTGCTGCTTGAAAATGAAAGTGACTAAAGTGGACCCTAGCAGTGGGTTCAGGCTCAATGTTGTTCTCAGCGGCCTGCTGGAGAAGTGGTTTGAAGCTGAGAGCAAGTCCAGGAGGTGCTGGATGGAAGGGGAAAGCCTGTGGAAAAAACAGGAGCTCTCCAGCGCCCTGGAGAAATACAACAAGGCTGTGGAACTAGCACCCTCGACGTCTAAGCTGCTGGCCCAGAGAGCCGAGCTCCATATGGACATGAAGAATTTCAGCCAAGCTATCCAGGATGGGGACAGCATGTGTCGGCTCCAGCCAACGTCAGCAAAggctCATTACATCAAGGCCAAAGCAATTCGCGGTGCTAATCGCAGAGAAGAGGCCTTGCAGGAGTTATTATATTGTGTAGCGCTAAAGTCAGACTGGGCGTCTGTGAAAATGGAAGCACAGAAGGTCTTGTGTGAGATGTTCTCTTCTGTATTTGAGGATGATGGTCTGGATACGCCTTTACATCCACTTCAGGCTACAGGCCCCAACCCTCGCATCAAACCTTTAGCTCTCCTCGACTCACTTCATTCTTCCCTGCCTAGAGATGGAGCTAGAGCTGGCTGCTCCAAGGACTCCCCACTCAGTAGCAGTAAAGCATGTGACGTTGGCAGTTCCTCATCCTTTCCCAAACCTGATGGAAGCTTAGAAGACTCTAAGAGCCTGGCAGCTGTCCTCTCCTCACTGCCTGTAACTGCGGGTCTTAAGAGGAAGTCTCCTGGTGATGCCAATGCCTTTGGGCCACCAAGCAAACTTCTTAAACAAGATCCAGCCTGCTCATCCCAGACTCCTGTTCCTGTCTCAAATGGCAGAAGGGAGGTACCTTCCCAGCTTCTGGACAGTTCAGATATGGAGTGTTCTTTGTGCATGAGattattTTATGAGCCTGTAACCACTCCCTGTGGACACACGTTCTGCCTCAAGTGTTTGGAACGCTGCCTGGACCACAACCCTAACTGCCCCCTGTGCAAGGAGAACCTCGCAGAGTATCTGGCCACTAGAGGATACAATAAGACCTTTTTGATGGAGGAGGTGCTTCAGCGCTATCTGAGTGAGGAGCTGGAAGAGAGGAGGAAAGTTCACgaagaagaaatgaaggagcTGTCAAACTTGAATCTGGAAGTGCCTATCTTTGTCTGCACAATGGCATTTCCCACAATCCCCTGCCCGCTGCACGTGTTTGAGCCTCGCTATAGACTGATGATCCGCAGAGCTATGGAGACTGGAACGAAGCAGTTTGGCATGTGTATTTCTGATGAACTAAAAGGGTTTGCGGATTTTGGCTGCATGCTGGAGGTGAGAGATGTGAAGTTCTTCCCTGATGGGCGCTCTGTGGTGGACACCATTGGTGTGTCTCGCTTTAAAGTGCTTTCTCATGGCCAGAGAGATGGTTACAACACGGCAAAGATTGAATATTTGGAAGACAAGAAGgTTGAGGGGGAGGAGCTGACCGAGCTGTTGAAGCTGCATGATTCTGTGTATGATCAGGCCACAGCCTGGTTCACCTCTCTCAAAGACAACATGAAGAGCCAGATCCTCAGCCACTTTGGCCACTTGCCTTCCAAGGACCCTGACCCACAGggAAACCCCAGTGGTCCGGCTTGGTGTTGGTGGCTCCTGGCAGTACTGCCTCTGGAGAGCAGAGCCCAGCTCACCATCCTGGCCATGACCTCACTGAAAGACCGGCTCATCGCCATTCGCCGGGTCCTCATTTTTGTCACTCGCAAGCGCCCTCGATGACCACAGCTTTCATTATAgccttcatcaccaccatcagcaTCATAATCATCGTTATTATCATGTTGTTCATCAACATGAGTAACAGGTAGCAGCCCACTGAAGCGGCTTCCATTGACTGTGGGTGTGTGTCACGTTCAGCTGTGTGTCTTTACTATAGGAGAAGTACTCATTCTGCACCTAGTATGGACTGACTTCTACAACAGATTGTTTGTTGCTCTGTCAGCGTAACACTTGCTCTTGCTTTATGCTCTGCCTCGACAAAGGCAGTATCTCTTGTAGCTTCTTGCAGACTTTGAGTCTGCTCAACTAAaatcacctaaaaaaaaataagaacattttgTATAGATTCCACTTCTGCTTTTGtgcctcttcttttttttggtgtgtATGGCTGACCAAATGCTTCTCATGGGCCTTCAAGCACCTTTACTGGCCTGACGGCTTGGTTGTGTTTTCCGAGAATCCCTGCACTTTAAACGTTTACATGCAGCATTTCCGCACCCTTAAAGAAAAGTCCCCAGAGTCACAGGTTTCAAGGCTGAAATTGTACCAGTCTTCATTGTAGAATAACGTTTGTAATCTACTGTTAGTAAAGTTGACCTATTTGTTATGTAATGTCATCATGTTATAAATGGCAGTTTAATCAAAGCTGAATTGGCCAAGTGGGAGAATGCGATCAAATCATCGCCATTAGAAATGGACAAACTGATTTGTCTGTGTATCTGCGAAAAGATTTAACTGGAGATGGGCTGATATTTGTCGAATTAGCCAGTCCTGTGTCAGGGGAAGCCACTAGATGACAATACAGAGCTGGTAAAATGCTGTAGACACAGTTTATGTAGTCTCTGCTCTGTTCAGTCTTTCAGTCTGACTTTCCTTGGAAGTTGGAATACTGAAAGCATGAGCTGTTTGGGAATATTGTACAAACATCTCAATAGAACTTCACACAGTATTATTTTAAGATCGCAATGTGTGCATAGTGTATGAAAAGAAAGCTCTGCTAAGATCTCTTGGTGGATCCATGGTGGAACAATGTGGTCACACTTtttatgcaataataataaaaaaaaaaataataataataatagatatgCTATTGAAGAAATTACACTGATTATACACTCTCATAGAAAGTGCTCAAATGTTTCTTTAAGTGGTGCTCTGCTATAGAAGAACCAAGAACCAAATCTTCACATCAACAAGCGAAGGTTATTTAACCCCTTAGacacaatactgtacataaactgAAACCTCTTTCACATGCCTGTTATGACATTAGAATCATGTATACCTTCAGTTTTATTGTACCCAAAATAGAACTCTGTGGGTCTCAACAATATACAGTTAGTAAATTAAACTATGGATGGGCAAATTTGCTAAACGACAATAACTGAAAACCCCTCTCGAGAgtgcatcactcagcccagtagtAAATGTTGAAACGCAttagagctaacaaacaccacttaCCACCCAAATAAAATGCACTCCAAGCAGACCATAAGAATTAACTGCTACCAAAAGTACAGAGTCatctgaaatatatttaaagggtttttTGTTAGataattatcacaatattgatctcagtttattaaaaaaaaagaaatacattttgttcTTAAATCTAAGTTAAATGGCAGTTCTAACAATAATGTACAACTTTAACctctagtgggcggggtttaaacgATACAAATTGAGCCACTGTCTATCCACAATGTGCTCAGATACAACAGACATGGTTTATCAAGATACATCTACTATTCAAAACATGGTCCTGTATGGAACCAGCAGTGGTTCTTCAATATGGCATTGCACACAGAaatatttgtatctgtttttctttttttatgagtGTAAAGGGAGAAAAATCAGAGCTGGAAAAGTACAATTTTCTACTTTTCAATATTGAAATATAGGGATCATGCGTATTGATTTATGggtgtacagtacagttatgttTTTGTCATATAATGTATGAAAGATGAGGATTGTTGTTCTGCATGCATTGGCGTGATATGGGTAAGTGGCCATTAAAGAGGTAATTCATTGGTCCACTTTATCACTCTTTACCACCTGCATTCATCTAAAAACATGAAGGacataaatgtgtataaagaCGTGTGAAGATGTACTTTGGAATTGTTCTAGTCACTAATTCCCGTGTGTGTATTGTAGTATATAATgtagtttatttgtgtgtggtGCACCGTTTTGTGGACAGATTTGCCTGTTTGTCCATGTGACTCATCTGTGTACAGACAAATCGGAGGCCTTcgactctttttctttttctttttgtttgtttttttaaacgtgaatgtctttcttttcttttgtggtGTTGGACTCCCTCTTTCATGtgtttctattctttttttttcttctttttttctttatttttcatgtaCCATCTCCTGTTGGTATCTACACAAATGCTGCattttttcatgtaaatttgTATGTTAAGATgaaattaaacttaattttgtattttaaatcaaTCCAA

Function

symbol description
lonrf2 Predicted to enable metal ion binding activity.

NR:

description
PREDICTED: LON peptidase N-terminal domain and RING finger protein 2

GO:

id name namespace
GO:0044238 primary metabolic process biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0046872 metal ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007259034.3 True 6290 mRNA 0.44 12 17183013 17199615

Neighbor

gene id symbol gene type direction distance location
chst10 chst10 coding upstream 33405 17142533 ~ 17149608 (+)
LOC103032094 NA coding upstream 65792 17113310 ~ 17117221 (+)
LOC103032412 gk,LOC107742635,LOC107700103,LOC107667651 coding upstream 73453 17081201 ~ 17109560 (+)
timmdc1 timmdc1 coding upstream 106100 17065402 ~ 17076913 (+)
poglut1 poglut1 coding upstream 122853 17049429 ~ 17060160 (+)
map4k4 map4k4,LOC108258915,LOC106574534,LOC106575325,LOC107668172,LOC107588849,LOC107707082 coding downstream 14219 17213834 ~ 17317203 (+)
LOC103030825 NA coding downstream 122630 17322245 ~ 17325366 (+)
LOC103032976 si:dkey-1h24.2,LOC108434752,LOC108258345,LOC107707829,LOC560392 coding downstream 225328 17424943 ~ 17473397 (+)
ing1 ing1 coding downstream 693146 17892761 ~ 17896437 (+)
hsf2bp LOC106595116 coding downstream 735244 17934859 ~ 17944725 (+)
G104177 NA non-coding upstream 475 17182296 ~ 17182538 (+)
G104162 NA non-coding upstream 135273 17046772 ~ 17047740 (+)
G104151 NA non-coding upstream 248530 16927224 ~ 16934483 (+)
G104144 NA non-coding upstream 321811 16860988 ~ 16861202 (+)
G104082 LOC107662997,LOC107757412,LOC108434698,LOC107707084 non-coding upstream 495640 16682740 ~ 16687373 (+)
G104183 LOC103030517,LOC108434725,LOC100705727,LOC101474240,LOC102192248,LOC103374257,LOC106510766 non-coding downstream 154814 17354429 ~ 17356491 (+)
G104190 NA non-coding downstream 282509 17482124 ~ 17485186 (+)
G104196 NA non-coding downstream 397533 17597148 ~ 17597444 (+)
G104204 NA non-coding downstream 502072 17701687 ~ 17701919 (+)
G104363 NA non-coding downstream 662020 17861635 ~ 17861860 (+)
LOC103031769 prps2 other upstream 44040 17119847 ~ 17138973 (+)
LOC103035065 nhlh2,LOC103035065,LOC108434665,LOC108258389,LOC107739819,LOC105019883 other upstream 288421 16888386 ~ 16894592 (+)
LOC103037450 NA other upstream 608580 16555694 ~ 16574433 (+)
col17a1 col17a1,LOC108434660,LOC107684270,LOC107583183 other upstream 675226 16463938 ~ 16507787 (+)
G104000 NA other upstream 724804 16451175 ~ 16458209 (+)
LOC111193547 NA other downstream 206980 17406595 ~ 17419138 (+)
G104656 pcdh8 other downstream 1719445 18919060 ~ 18923203 (+)
nfkbiz nfkbiz other downstream 2534611 19734226 ~ 19744924 (+)
G105276 NA other downstream 3789658 20989273 ~ 21055483 (+)
G105312 abcb6,abcb6a,LOC107556273,LOC107750068 other downstream 3819423 21019038 ~ 21028990 (+)

Expression


Co-expression Network