timmdc1 (timmdc1)


Basic Information

Item Value
gene id timmdc1
gene name timmdc1
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 17065402 ~ 17076913 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007259042.3
TTGTCgaagaaatacatttaaatgcaaaaaatgttgcacccagaaggaagtgtttgATTGCAATGCTTTCGGCAAGGAAGATCAACGTTACCAGTGATTTATCAGCCCGCTGGAGCGAGATGCACCCAGAGCGCCCCTTTCCGTGCACGCCCGAGTGCGGGGTGAAGGCGACAGACACGGCCTGCCCCAGGGCCTTTTACACCGGACTGCTCTGGGAGCTTTTCAGGTTCACCTTGCCCAGAGTGCACGCGGCTGAGAGCGCAGATACTCAGACTAACACCACCCTGCCCAAACATGTGGGCAGACCGGAGTTTCCTGACACGGGATGGGACCGCATTAAAGACCTGATCCAGCCAGAAACTGGACAGCGGTACTCAGAGGAGCTGAAGAACGTGGTGAAGAGCGGGATAACAGCAGCTTTGGTGGGAATGGTTTACGGAGGCTTGCCAGCAGGGCGCCACGCCCGCGAGAGATACATCCAGCTCAGCCAGGCGGAGATCTTCAGGAACAGGGCGGATGCAGTGCGTTCGGCCCATAATGCAGCTATCCGAGGATTCGTGAGGTACGGGTGGAGGTGGAGCTGGAGGATGGCTGCTTTTGTGACTCTTTTTAACTCTGTCAGCACCGGCCTCTCTGTGTACAGAGACGAAAACGCCATGAGTCACTTCGCTGCAGCGGGAGctGTGACTGGGGGCGTGTTCCGGATGAATCTGGGTCTCAGGGGACTGGTGGCAGGAACCATTATTGGAGCTGCTTTGGGTGTGCCAGCTGGAGCGTTGATTATCGGCCTACAGAAACTGGGTGGAGAGACAATGCGAGAGAAAAGACGGCGAGAGCGGAGAGAACTGTACGAGTTGAAGGTGGCTGAATGgaACGCTCGTTTACAACTTACAGACAGCGTGATTGATGAAATAAGTGGGAAGGACATGGATACTGACCTTCAGCGGATTGAAGAGTTGCTTAACCTGCCTAGAAATGAAGATTCAACCAAGTCTTCTGAAGGCCATTGACAACGAGCCTGACTTCAGTGATGGACAGTGACGGTGTTAGGCTTTAACACATTACAGATTTTATCACATGACATTTGCTTCATGACTCTTCATATGGTGAAATACACTGTATGGATTCACCATTAACATCATTATTTCAGATGTCCCATTGCCACATATGTAAAAAATCAAGCACCTGGCCATACAGTCTCCTTTACGGACATTACTAAAAGAATATGTTTATTCCTCCTGGATGTTTCACAAAACTCACATAAAGTTACAGAACGGGGTCACCAAGTGCTAAGGAGCAAAGTGCAGAAAAGTCTTCAACACTCAATACCTGCAGAGTTCTAAACCCTCTGCAAAAAGGGGACTGACTCCACACTAAAGCCAGTGGATTTATAATGGGAAGTCATAAAAGCTCTGTCTGTAGTAGTCCCAGTATTAACCAGCAATAAACCCCTGCTGGTTTATTATGGCCCTCATGTGTGGAAGGTTTGATGACTGTGATCCTACATGTGTGTTTGATGGAAATctcaaatataatttattttatattgtgtctGAACGTGTTTTAAGAACATTGTAACACTACAAAGATCACAAAATAATCAAGAGCTGGGTTAAACACTG
>XM_007259043.3
GCCCTCCACAGCCAGGCGGCGCTGCAGGAGCCGCTCCGCGTGTGTTGACTTTGTGGAGGAGGATGAAGGAGAATTAGAACAGCAGAAGTGATTTATCAGCCCGCTGGAGCGAGATGCACCCAGAGCGCCCCTTTCCGTGCACGCCCGAGTGCGGGGTGAAGGCGACAGACACGGCCTGCCCCAGGGCCTTTTACACCGGACTGCTCTGGGAGCTTTTCAGGTTCACCTTGCCCAGAGTGCACGCGGCTGAGAGCGCAGATACTCAGACTAACACCACCCTGCCCAAACATGTGGGCAGACCGGAGTTTCCTGACACGGGATGGGACCGCATTAAAGACCTGATCCAGCCAGAAACTGGACAGCGGTACTCAGAGGAGCTGAAGAACGTGGTGAAGAGCGGGATAACAGCAGCTTTGGTGGGAATGGTTTACGGAGGCTTGCCAGCAGGGCGCCACGCCCGCGAGAGATACATCCAGCTCAGCCAGGCGGAGATCTTCAGGAACAGGGCGGATGCAGTGCGTTCGGCCCATAATGCAGCTATCCGAGGATTCGTGAGGTACGGGTGGAGGTGGAGCTGGAGGATGGCTGCTTTTGTGACTCTTTTTAACTCTGTCAGCACCGGCCTCTCTGTGTACAGAGACGAAAACGCCATGAGTCACTTCGCTGCAGCGGGAGctGTGACTGGGGGCGTGTTCCGGATGAATCTGGGTCTCAGGGGACTGGTGGCAGGAACCATTATTGGAGCTGCTTTGGGTGTGCCAGCTGGAGCGTTGATTATCGGCCTACAGAAACTGGGTGGAGAGACAATGCGAGAGAAAAGACGGCGAGAGCGGAGAGAACTGTACGAGTTGAAGGTGGCTGAATGgaACGCTCGTTTACAACTTACAGACAGCGTGATTGATGAAATAAGTGGGAAGGACATGGATACTGACCTTCAGCGGATTGAAGAGTTGCTTAACCTGCCTAGAAATGAAGATTCAACCAAGTCTTCTGAAGGCCATTGACAACGAGCCTGACTTCAGTGATGGACAGTGACGGTGTTAGGCTTTAACACATTACAGATTTTATCACATGACATTTGCTTCATGACTCTTCATATGGTGAAATACACTGTATGGATTCACCATTAACATCATTATTTCAGATGTCCCATTGCCACATATGTAAAAAATCAAGCACCTGGCCATACAGTCTCCTTTACGGACATTACTAAAAGAATATGTTTATTCCTCCTGGATGTTTCACAAAACTCACATAAAGTTACAGAACGGGGTCACCAAGTGCTAAGGAGCAAAGTGCAGAAAAGTCTTCAACACTCAATACCTGCAGAGTTCTAAACCCTCTGCAAAAAGGGGACTGACTCCACACTAAAGCCAGTGGATTTATAATGGGAAGTCATAAAAGCTCTGTCTGTAGTAGTCCCAGTATTAACCAGCAATAAACCCCTGCTGGTTTATTATGGCCCTCATGTGTGGAAGGTTTGATGACTGTGATCCTACATGTGTGTTTGATGGAAATctcaaatataatttattttatattgtgtctGAACGTGTTTTAAGAACATTGTAACACTACAAAGATCACAAAATAATCAAGAGCTGGGTTAAACACTG
>XM_022674788.1
GGCGCTGCAGGAGCCGCTCCGCGTGTGTTGACTTTGTGGAGGAGGATGAAGGAGAAGTGATTTATCAGCCCGCTGGAGCGAGATGCACCCAGAGCGCCCCTTTCCGTGCACGCCCGAGTGCGGGGTGAAGGCGACAGACACGGCCTGCCCCAGGGCCTTTTACACCGGACTGCTCTGGGAGCTTTTCAGGTTCACCTTGCCCAGAGTGCACGCGGCTGAGAGCGCAGATACTCAGACTAACACCACCCTGCCCAAACATGTGGGCAGACCGGAGTTTCCTGACACGGGATGGGACCGCATTAAAGACCTGATCCAGCCAGAAACTGGACAGCGGTACTCAGAGGAGCTGAAGAACGTGGTGAAGAGCGGGATAACAGCAGCTTTGGTGGGAATGGTTTACGGAGGCTTGCCAGCAGGGCGCCACGCCCGCGAGAGATACATCCAGCTCAGCCAGGCGGAGATCTTCAGGAACAGGGCGGATGCAGTGCGTTCGGCCCATAATGCAGCTATCCGAGGATTCGTGAGGTACGGGTGGAGGTGGAGCTGGAGGATGGCTGCTTTTGTGACTCTTTTTAACTCTGTCAGCACCGGCCTCTCTGTGTACAGAGACGAAAACGCCATGAGTCACTTCGCTGCAGCGGGAGctGTGACTGGGGGCGTGTTCCGGATGAATCTGGGTCTCAGGGGACTGGTGGCAGGAACCATTATTGGAGCTGCTTTGGGTGTGCCAGCTGGAGCGTTGATTATCGGCCTACAGAAACTGGGTGGAGAGACAATGCGAGAGAAAAGACGGCGAGAGCGGAGAGAACTGTACGAGTTGAAGGTGGCTGAATGgaACGCTCGTTTACAACTTACAGACAGCGTGATTGATGAAATAAGTGGGAAGGACATGGATACTGACCTTCAGCGGATTGAAGAGTTGCTTAACCTGCCTAGAAATGAAGATTCAACCAAGTCTTCTGAAGGCCATTGACAACGAGCCTGACTTCAGTGATGGACAGTGACGGTGTTAGGCTTTAACACATTACAGATTTTATCACATGACATTTGCTTCATGACTCTTCATATGGTGAAATACACTGTATGGATTCACCATTAACATCATTATTTCAGATGTCCCATTGCCACATATGTAAAAAATCAAGCACCTGGCCATACAGTCTCCTTTACGGACATTACTAAAAGAATATGTTTATTCCTCCTGGATGTTTCACAAAACTCACATAAAGTTACAGAACGGGGTCACCAAGTGCTAAGGAGCAAAGTGCAGAAAAGTCTTCAACACTCAATACCTGCAGAGTTCTAAACCCTCTGCAAAAAGGGGACTGACTCCACACTAAAGCCAGTGGATTTATAATGGGAAGTCATAAAAGCTCTGTCTGTAGTAGTCCCAGTATTAACCAGCAATAAACCCCTGCTGGTTTATTATGGCCCTCATGTGTGGAAGGTTTGATGACTGTGATCCTACATGTGTGTTTGATGGAAATctcaaatataatttattttatattgtgtctGAACGTGTTTTAAGAACATTGTAACACTACAAAGATCACAAAATAATCAAGAGCTGGGTTAAACACTG

Function

symbol description
timmdc1 Predicted to be located in mitochondrial membrane. Predicted to be integral component of membrane. Predicted to be active in mitochondrion. Human ortholog(s) of this gene implicated in nuclear type mitochondrial complex I deficiency 31. Orthologous to human TIMMDC1 (translocase of inner mitochondrial membrane domain containing 1).

NR:

description
complex I assembly factor TIMMDC1, mitochondrial isoform X1

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K23505 TIMMDC1; complex I assembly factor TIMMDC1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007259042.3 True 1622 mRNA 0.48 8 17067191 17076913
XM_007259043.3 False 1616 mRNA 0.49 8 17065402 17076913
XM_022674788.1 False 1585 mRNA 0.49 8 17065419 17076913

Neighbor

gene id symbol gene type direction distance location
poglut1 poglut1 coding upstream 5242 17049429 ~ 17060160 (+)
vangl1 vangl1,LOC107552384,LOC107748077,LOC107588836 coding upstream 45200 16909648 ~ 17020202 (+)
LOC103035380 NA coding upstream 248907 16803908 ~ 16816495 (+)
LOC103036216 NA coding upstream 266512 16790748 ~ 16798890 (+)
LOC111188171 zc3h12c coding upstream 403057 16628689 ~ 16662345 (+)
LOC103032412 gk,LOC107742635,LOC107700103,LOC107667651 coding downstream 4288 17081201 ~ 17109560 (+)
LOC103032094 NA coding downstream 36397 17113310 ~ 17117221 (+)
chst10 chst10 coding downstream 65620 17142533 ~ 17149608 (+)
lonrf2 lonrf2 coding downstream 106100 17183013 ~ 17199615 (+)
map4k4 map4k4,LOC108258915,LOC106574534,LOC106575325,LOC107668172,LOC107588849,LOC107707082 coding downstream 136921 17213834 ~ 17317203 (+)
G104162 NA non-coding upstream 17662 17046772 ~ 17047740 (+)
G104151 NA non-coding upstream 130919 16927224 ~ 16934483 (+)
G104144 NA non-coding upstream 204200 16860988 ~ 16861202 (+)
G104082 LOC107662997,LOC107757412,LOC108434698,LOC107707084 non-coding upstream 378029 16682740 ~ 16687373 (+)
G104001 NA non-coding upstream 519392 16544256 ~ 16546010 (+)
G104177 NA non-coding downstream 105383 17182296 ~ 17182538 (+)
G104183 LOC103030517,LOC108434725,LOC100705727,LOC101474240,LOC102192248,LOC103374257,LOC106510766 non-coding downstream 277516 17354429 ~ 17356491 (+)
G104190 NA non-coding downstream 405211 17482124 ~ 17485186 (+)
G104196 NA non-coding downstream 520235 17597148 ~ 17597444 (+)
G104204 NA non-coding downstream 624774 17701687 ~ 17701919 (+)
LOC103035065 nhlh2,LOC103035065,LOC108434665,LOC108258389,LOC107739819,LOC105019883 other upstream 170810 16888386 ~ 16894592 (+)
LOC103037450 NA other upstream 490969 16555694 ~ 16574433 (+)
col17a1 col17a1,LOC108434660,LOC107684270,LOC107583183 other upstream 557615 16463938 ~ 16507787 (+)
G104000 NA other upstream 607193 16451175 ~ 16458209 (+)
LOC103032764 LOC108443686,LOC108258285,LOC107746061,LOC107684317,LOC107566138,LOC105891017,LOC107690754,LOC107086972 other upstream 1767463 14999455 ~ 15297939 (+)
LOC103031769 prps2 other downstream 42934 17119847 ~ 17138973 (+)
LOC111193547 NA other downstream 329682 17406595 ~ 17419138 (+)
G104656 pcdh8 other downstream 1842147 18919060 ~ 18923203 (+)
nfkbiz nfkbiz other downstream 2657313 19734226 ~ 19744924 (+)
G105276 NA other downstream 3912360 20989273 ~ 21055483 (+)

Expression


Co-expression Network