vangl1 (vangl1,LOC107552384,LOC107748077,LOC107588836)


Basic Information

Item Value
gene id vangl1
gene name vangl1,LOC107552384,LOC107748077,LOC107588836
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 16909648 ~ 17020202 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007259046.3
acagaacacTGCCCCCCTGTTATTCCCAATGTGGCGAGGCGATTCCGCAGCTGGAGCTTCCAAACGAAACCGGCTCGGTTGAAGAGGCGAGCTGTACCTCAGGATTACTTTTACACGAAGCTCAGCTCTGTGTTCCTCGGTCTGTCGGAATGATACGCTTCGGTAAAGATTGACGCTTAATGGCTGGGAGCCCCCAGGCTCACGTCCAAGATTGACTCTCGGCAGAGCACAGTCTCCACCAATCTGCTGAGCGAGTTTCGCCTCCTGCCAGATAAAACCGCCCACAAGCTTCCACTACGTCTGCCCAGCCCCAAGCCCAGCAACGTCCAGGACGCCCTCAGCCAATCGCTGGGGCAGGAAAGCGCCAACATGGACACGGAGTCCACCTACTCTGGCTACTCGTACCACTCTGGCCGGTCGAGGGGCTCACACAGGCATGGgGAGCGCAGTCGTGACCGGCACAAGTCCCGCAGTAAAGACAGCAGCCGCTCAGAGAAATCCGTCACCATCAACGCTCCACCTGCTGAGCCCTTGTTAGGAGACCAGTCGATGCGAGGAGAAGAGATGCAGGATGACAACTGGGGCGAGACCACCACGGCCGTCACCGGCACCTCCGAGCACTCGCTCTCGCAAGAAGACATCGTCCGCATCAGCAAGGACCTGGACGACAGCGTGGGTCTGGACTGCAAGCATTACCTCTCCGTCTCCTTCTCCGTCATCCTGGGCCTGCTGGTGCTCCTCACGCCGCTGGCCTTCCTGGTGCTGCCTCACCTGCTGTGGCCGGAGAGACTGCGGGTCTGCGGCACGGCCTGCGAGGGTCTCTTCATCTCCGTCGCCTTCAAGCTGCTCATTCTGCTGCTGGCCGTGTGGGCGCTGTTCTTCCGGCCCCCCCGAGCGGGCATGCCCCGAATCTTCGTGTTCCGCGCCCTGCTGTCCACGCTGGTGTTCCTGTTCGTGCTCTCCTATTGGCTGTTCTATGGAGTGCGCATCTTCGACACAAAGGATGAGGATTATCAGGGCATTGTGCAGTATGCAGTCTCTCTGGTAGACGCTCTGCTGTTTATCCACTACCTGGCCATAGTGCTACTGGAGCTGCGGCAGCTGCAGCCCTGCTTCTCCCTGTGCGTCACTCGCTCTACAGACGGAGAGACGCGCCACTACAACCTGGGACAGCTGAGTATCCAGAGGGCAGCTGTAGCCGTGCTGGAGAACTACTACAGAGATTTCCCTGTACACAACCCAGCTCTACTCACAGCCTCCAAGTCCCGCGCAGCCAAACACCTGGCAGGCCTCAAGGTCTACAACGTAGATGGTCCTGGAGGCAATAACGCAGCAGCAGGTATCGCCCAGTCTCAGTCCCGAGCCATGATCGCCGCTGCCGCCCGCCGACGAGACACCAGCCATAATGAGCTCTACTACGAGGAAGCAGAGCACGAGAGACGCGTCCGCAAGCGCAAAGCCAGGTTGGTGGTGGCAGTTGAAGAGGCTTTCACGCACATCCGCCGCCTCCAGGAGGAGGAGCAGAAGAAGTCCCCTGGGGAAATCATGGATCCACGCGAGGCGGCGCAGGCCATCTTTCCTTCTATGGCCCGAGCCCTGCAGAAGTACCTGCGCACCACCCGTCAGCAGCACTGCCACAGCATGGAGAGCATCCAGCAGCATCTAGCCTTCTGCATCACACACAACATGACGCCTAAGGCGTTTCTGGAGAGCTACCTGATGCCAGGCCCCACGCTGCAGTACGGCCGCGAGCGCTGGCTGGCCCACCAGTGGACCCTCATCAGCGAGGCCTCAGTGACCAGCGGCCTGAAGGAGGGCACTGTATTTCTGCTAAAATGCATAGACTTCAGCTTGGTGGTCACCACTAAAAAGATCCCCTACATCAAGCTCTCTGAGGAGTTCATCGACCCCAAGTCCCACAAGTTTGTCCTGCGGCTACAGTCGGAGACTTCGGTGTAGCCATATATCACAtcttgtcttttgttttgtttgttttttcagtcgCTCACAAGCTATTTTTGTGTTGGGTTGAGATTTTCAAATGTAATGAgtttttcttagatttttttatgtatgtaatatatacatatgaatCTTTATATCacatatttgaatatatttcttttcttttttgtttagttttttttatcagtttgggCAGGCACGTTAAGCAGGATGCACTGTTCTAACATGCTCACGTTCCAAACATGCAAAAGTGTACAAAGACATGCAAATGTAACATGAGAGAATATAGTGCACAAGACTTCTTTTtcacatcctttttttttttaaaacaccagAAACTCTGAACTATCCAGTGGACCACTTTCAAAACCTCTCAAAAAATGGTGGATGGACCCAAAGGATTCTCACAGGAGAGAgatgacaacatttctcttggGTTTTCTCTTTCCTCTCAGCTCAGACGTGGACATgttcaggcaaaggcactgtgAATCAAATCTAACCCCAGTAGACGGGATTTCTCCACTTGTTCGCCACATGTTTCTGTATCAGCGGAGAACCCGCACCTCTCTGCACTCTCAGACCGCTGTACACTCtctgttcactctctctctctctccgtctgcCGCAGAGGTTGTTATAGCAACCGAGCTTTGACTCCACGGGGTTGAAAAACATGAGACATGGTCGAAATGATGACCTTTTTCTACTGTAAGTGTGTATGAACTCTAGCGGTGCTTCTTTTTTATCATCAACAATCACATTGGATCTGTCTCATCACTGATAAAACACAAcataatcacattttattttttgtttttcatttacacattatACCTTTTTTTTGGGGTCAGTATCAATTTAATGTGCCTTTTGTGTCTGCAGCTtttactctgaatgaacactgaaaaaaagccatttaaacagAGAATTCCTTGATGATATCTAAACattgatgatatatatattccttGATGATATATAAACCTCTAAGCCCTCTAAGAAAGAAACTGTTTACATCAGTTTTCATTACAACCTtcataatatttagttttttttaaggaactGAGGGCActtgctgcatgttcagcagttaacaatattcattttcacTTATTAGTTAATGTTTCTCAAATAGTTCCCATACTTAGGTATGggaggtaaagcttaagctaaaatatcagtaaattaattaataatttgagaaaattaaactgtATATTTGAAATGGAAATTAACAAACTatgaacattttataatgttttcatTATAAGCCAATTTtagcaaatatttttaaattgtccagtaaaaaaagtcttataaatatgataagtAGTCAAAAGAGTAATGCCTTTTCTCTGTAATGAGGAtcaaaaggcacagtattctgataatgaccctaTTCAACTTGTGCACATTGTACAGATGTGAGGTGTTGGTGAGTGTGTTGTTAAAGTGGTAAGAGTTTAAATTTAGTGTTCAGCTTGAGAAATGGCAGTTCAATGAGTGGAAACAGTTATTTAGGGTATTTTCACACAGCAGATTAATTTTTGGTGGTGTGGCAGTGTGAAGGGGCTAAGATACACTAAATCTGAGGCAGTGTCATTCTGTCTGAACAGCCAGAACAGAATTCATGGGACGTTTAAatcaaagaaaggaaaaaaggcaGAATTAAAGGCTGAAAATGGACAACATCATTGAGTAAGGAAGGGTTTAGTGGGAGATAATGACCTCATAATCGGTAACAGATCTcgttaatataaaaataaataaaaaaataaaggttatgttcacatta
>XM_007259047.3
atttccaACTCCCTCTTTCCTTCCCTTCCCTTCCCTTTAGTGGGAAGCCGAAAGGCGTCGACACGCTGCTTTAGTTAAAGGCTAGGTTAACTAACCTCGCTATAATAACCGGAGAAAAAGCTTAGGTTAGCTATCCTAGCTAGCTACTGTCGCCTCCTCGCTTTTCTGCTCTTTTCCAGCTTTAAGCATTCTTTCCCCCCTCAATATCTGCCTGTACCGGCGGTGTCTAGTCGAGGGCGGTTCGCTGCTGTTCACCGCGCCGCTGTCTGGAGCAGGTTTTGGCGCTCCAGGCCCTGAGGAGACCGGGGAGTTTCCTACCGCGTCCGCCATTTGTTCTGGTTGTGGGAGGGAGGCTACAGGTAGCCAGGGCTGGGAGTTGGCGCACACACATTTAGAAGTGAGCTAGTTAATGAGGCAGCTGAGGTGTTTTCACTACTCAACGGCATGTcagATTGACGCTTAATGGCTGGGAGCCCCCAGGCTCACGTCCAAGATTGACTCTCGGCAGAGCACAGTCTCCACCAATCTGCTGAGCGAGTTTCGCCTCCTGCCAGATAAAACCGCCCACAAGCTTCCACTACGTCTGCCCAGCCCCAAGCCCAGCAACGTCCAGGACGCCCTCAGCCAATCGCTGGGGCAGGAAAGCGCCAACATGGACACGGAGTCCACCTACTCTGGCTACTCGTACCACTCTGGCCGGTCGAGGGGCTCACACAGGCATGGgGAGCGCAGTCGTGACCGGCACAAGTCCCGCAGTAAAGACAGCAGCCGCTCAGAGAAATCCGTCACCATCAACGCTCCACCTGCTGAGCCCTTGTTAGGAGACCAGTCGATGCGAGGAGAAGAGATGCAGGATGACAACTGGGGCGAGACCACCACGGCCGTCACCGGCACCTCCGAGCACTCGCTCTCGCAAGAAGACATCGTCCGCATCAGCAAGGACCTGGACGACAGCGTGGGTCTGGACTGCAAGCATTACCTCTCCGTCTCCTTCTCCGTCATCCTGGGCCTGCTGGTGCTCCTCACGCCGCTGGCCTTCCTGGTGCTGCCTCACCTGCTGTGGCCGGAGAGACTGCGGGTCTGCGGCACGGCCTGCGAGGGTCTCTTCATCTCCGTCGCCTTCAAGCTGCTCATTCTGCTGCTGGCCGTGTGGGCGCTGTTCTTCCGGCCCCCCCGAGCGGGCATGCCCCGAATCTTCGTGTTCCGCGCCCTGCTGTCCACGCTGGTGTTCCTGTTCGTGCTCTCCTATTGGCTGTTCTATGGAGTGCGCATCTTCGACACAAAGGATGAGGATTATCAGGGCATTGTGCAGTATGCAGTCTCTCTGGTAGACGCTCTGCTGTTTATCCACTACCTGGCCATAGTGCTACTGGAGCTGCGGCAGCTGCAGCCCTGCTTCTCCCTGTGCGTCACTCGCTCTACAGACGGAGAGACGCGCCACTACAACCTGGGACAGCTGAGTATCCAGAGGGCAGCTGTAGCCGTGCTGGAGAACTACTACAGAGATTTCCCTGTACACAACCCAGCTCTACTCACAGCCTCCAAGTCCCGCGCAGCCAAACACCTGGCAGGCCTCAAGGTCTACAACGTAGATGGTCCTGGAGGCAATAACGCAGCAGCAGGTATCGCCCAGTCTCAGTCCCGAGCCATGATCGCCGCTGCCGCCCGCCGACGAGACACCAGCCATAATGAGCTCTACTACGAGGAAGCAGAGCACGAGAGACGCGTCCGCAAGCGCAAAGCCAGGTTGGTGGTGGCAGTTGAAGAGGCTTTCACGCACATCCGCCGCCTCCAGGAGGAGGAGCAGAAGAAGTCCCCTGGGGAAATCATGGATCCACGCGAGGCGGCGCAGGCCATCTTTCCTTCTATGGCCCGAGCCCTGCAGAAGTACCTGCGCACCACCCGTCAGCAGCACTGCCACAGCATGGAGAGCATCCAGCAGCATCTAGCCTTCTGCATCACACACAACATGACGCCTAAGGCGTTTCTGGAGAGCTACCTGATGCCAGGCCCCACGCTGCAGTACGGCCGCGAGCGCTGGCTGGCCCACCAGTGGACCCTCATCAGCGAGGCCTCAGTGACCAGCGGCCTGAAGGAGGGCACTGTATTTCTGCTAAAATGCATAGACTTCAGCTTGGTGGTCACCACTAAAAAGATCCCCTACATCAAGCTCTCTGAGGAGTTCATCGACCCCAAGTCCCACAAGTTTGTCCTGCGGCTACAGTCGGAGACTTCGGTGTAGCCATATATCACAtcttgtcttttgttttgtttgttttttcagtcgCTCACAAGCTATTTTTGTGTTGGGTTGAGATTTTCAAATGTAATGAgtttttcttagatttttttatgtatgtaatatatacatatgaatCTTTATATCacatatttgaatatatttcttttcttttttgtttagttttttttatcagtttgggCAGGCACGTTAAGCAGGATGCACTGTTCTAACATGCTCACGTTCCAAACATGCAAAAGTGTACAAAGACATGCAAATGTAACATGAGAGAATATAGTGCACAAGACTTCTTTTtcacatcctttttttttttaaaacaccagAAACTCTGAACTATCCAGTGGACCACTTTCAAAACCTCTCAAAAAATGGTGGATGGACCCAAAGGATTCTCACAGGAGAGAgatgacaacatttctcttggGTTTTCTCTTTCCTCTCAGCTCAGACGTGGACATgttcaggcaaaggcactgtgAATCAAATCTAACCCCAGTAGACGGGATTTCTCCACTTGTTCGCCACATGTTTCTGTATCAGCGGAGAACCCGCACCTCTCTGCACTCTCAGACCGCTGTACACTCtctgttcactctctctctctctccgtctgcCGCAGAGGTTGTTATAGCAACCGAGCTTTGACTCCACGGGGTTGAAAAACATGAGACATGGTCGAAATGATGACCTTTTTCTACTGTAAGTGTGTATGAACTCTAGCGGTGCTTCTTTTTTATCATCAACAATCACATTGGATCTGTCTCATCACTGATAAAACACAAcataatcacattttattttttgtttttcatttacacattatACCTTTTTTTTGGGGTCAGTATCAATTTAATGTGCCTTTTGTGTCTGCAGCTtttactctgaatgaacactgaaaaaaagccatttaaacagAGAATTCCTTGATGATATCTAAACattgatgatatatatattccttGATGATATATAAACCTCTAAGCCCTCTAAGAAAGAAACTGTTTACATCAGTTTTCATTACAACCTtcataatatttagttttttttaaggaactGAGGGCActtgctgcatgttcagcagttaacaatattcattttcacTTATTAGTTAATGTTTCTCAAATAGTTCCCATACTTAGGTATGggaggtaaagcttaagctaaaatatcagtaaattaattaataatttgagaaaattaaactgtATATTTGAAATGGAAATTAACAAACTatgaacattttataatgttttcatTATAAGCCAATTTtagcaaatatttttaaattgtccagtaaaaaaagtcttataaatatgataagtAGTCAAAAGAGTAATGCCTTTTCTCTGTAATGAGGAtcaaaaggcacagtattctgataatgaccctaTTCAACTTGTGCACATTGTACAGATGTGAGGTGTTGGTGAGTGTGTTGTTAAAGTGGTAAGAGTTTAAATTTAGTGTTCAGCTTGAGAAATGGCAGTTCAATGAGTGGAAACAGTTATTTAGGGTATTTTCACACAGCAGATTAATTTTTGGTGGTGTGGCAGTGTGAAGGGGCTAAGATACACTAAATCTGAGGCAGTGTCATTCTGTCTGAACAGCCAGAACAGAATTCATGGGACGTTTAAatcaaagaaaggaaaaaaggcaGAATTAAAGGCTGAAAATGGACAACATCATTGAGTAAGGAAGGGTTTAGTGGGAGATAATGACCTCATAATCGGTAACAGATCTcgttaatataaaaataaataaaaaaataaaggttatgttcacatta

Function

symbol description
vangl1 Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in primary posterior lateral line primordium. Human ortholog(s) of this gene implicated in caudal regression syndrome and neural tube defect. Orthologous to human VANGL1 (VANGL planar cell polarity protein 1).

NR:

description
PREDICTED: vang-like protein 1

GO: NA

KEGG:

id description
K04510 VANGL; vang-like

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007259046.3 False 3763 mRNA 0.47 9 16909648 17020202
XM_007259047.3 True 4046 mRNA 0.48 9 16911194 17020202

Neighbor

gene id symbol gene type direction distance location
LOC103035380 NA coding upstream 93153 16803908 ~ 16816495 (+)
LOC103036216 NA coding upstream 110758 16790748 ~ 16798890 (+)
LOC111188171 zc3h12c coding upstream 247303 16628689 ~ 16662345 (+)
LOC103036820 NA coding upstream 284064 16611601 ~ 16625584 (+)
LOC103037127 NA coding upstream 308613 16576843 ~ 16601035 (+)
poglut1 poglut1 coding downstream 29227 17049429 ~ 17060160 (+)
timmdc1 timmdc1 coding downstream 45200 17065402 ~ 17076913 (+)
LOC103032412 gk,LOC107742635,LOC107700103,LOC107667651 coding downstream 60999 17081201 ~ 17109560 (+)
LOC103032094 NA coding downstream 93108 17113310 ~ 17117221 (+)
chst10 chst10 coding downstream 122331 17142533 ~ 17149608 (+)
G104144 NA non-coding upstream 48446 16860988 ~ 16861202 (+)
G104082 LOC107662997,LOC107757412,LOC108434698,LOC107707084 non-coding upstream 222275 16682740 ~ 16687373 (+)
G104001 NA non-coding upstream 363638 16544256 ~ 16546010 (+)
LOC111193544 NA non-coding upstream 472016 16433809 ~ 16437632 (+)
G103972 NA non-coding upstream 650650 16258785 ~ 16258998 (+)
G104162 NA non-coding downstream 26570 17046772 ~ 17047740 (+)
G104177 NA non-coding downstream 162094 17182296 ~ 17182538 (+)
G104183 LOC103030517,LOC108434725,LOC100705727,LOC101474240,LOC102192248,LOC103374257,LOC106510766 non-coding downstream 334227 17354429 ~ 17356491 (+)
G104190 NA non-coding downstream 461922 17482124 ~ 17485186 (+)
G104196 NA non-coding downstream 576946 17597148 ~ 17597444 (+)
LOC103035065 nhlh2,LOC103035065,LOC108434665,LOC108258389,LOC107739819,LOC105019883 other upstream 15056 16888386 ~ 16894592 (+)
LOC103037450 NA other upstream 335215 16555694 ~ 16574433 (+)
col17a1 col17a1,LOC108434660,LOC107684270,LOC107583183 other upstream 401861 16463938 ~ 16507787 (+)
G104000 NA other upstream 451439 16451175 ~ 16458209 (+)
LOC103032764 LOC108443686,LOC108258285,LOC107746061,LOC107684317,LOC107566138,LOC105891017,LOC107690754,LOC107086972 other upstream 1611709 14999455 ~ 15297939 (+)
LOC103031769 prps2 other downstream 99645 17119847 ~ 17138973 (+)
LOC111193547 NA other downstream 386393 17406595 ~ 17419138 (+)
G104656 pcdh8 other downstream 1898858 18919060 ~ 18923203 (+)
nfkbiz nfkbiz other downstream 2714024 19734226 ~ 19744924 (+)
G105276 NA other downstream 3969071 20989273 ~ 21055483 (+)

Expression


Co-expression Network