LOC103035380


Basic Information

Item Value
gene id LOC103035380
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 16803908 ~ 16816495 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007259049.3
ATCAGCTCCATTCCCCTGCACTCGCTGACCTGGATCTACTGGATTGCTTATCATGAAGCAGCTCCTGGTGTTCCTGTGTGGGTCTCTGGCTTTGGCAGTAAGCTTAGCTGCTCCAACGCAGCATGATGCAATGATGGCAGatccTCCGGTAGAAAATCCAAAGGCTGATGAAGATTCCCACTACGACTCCAAGTTTGACCGCTGTGATGGCGTTGAGTTTGATGCCATCGCCCCTGATGAGACAggacaaatgttcttttttaaagGTGACCATTTATGGAAGGGTTTCGCAGGCCCCAGTGAGCATGCAAATGGTACATTCCAGGAGCTAGATGAATATCATCACCTGGGTCATGTGGACGCAGCCTTCCGCATGCACAATAAAGAAGAGGAAGCTCAAAAAGATCACGACCACATCTTTTTCTTCTTGGATGATAAAGTCTTTAGCTACTACAACCACATTCTGGAGAAAGGCTTCCCCTTAGAGATCCAGCAGGTGTTTCCTGGAGTGCCCAGCCACCTAGACGCAGCAGTGGAGTGTCCTAAAGGAGAGTGCATCACTGATTCAGTGCTGTTCTTTAAAGGACATGAGGTGTACAACTTTGATATCAAGACTAAGACAGTGAAGAAGAAGGTGTGGGATCACTTGCCCAACTGCACCTCAGCGGTCCGCTGGCTCGAGCATTACTACTGTTTCCACGGCCACAACTTCACCCGATTCCATCCCGTGTCTGGAGAGGTAGTTGGAGATTATCCCAAAGATGCCAGACGCTACTTCATGCGCTGCGCAGATTTTGgtCATGGGGCCGGCCACAAAAAGCCACCCTGTAAACTCGACGCCATCAGCACTGACGACAAGGGCAGGACTTATGCATTTATGGAGAATGTATACATTAGGTTGGATTCACACCGTGATGGAAGCCATCCTTTCCCCATAACAAGATCATGGAAGGAGATTTCAGGACGCGTGGATGCCGTTTTTGCTTATGGTGACAAGTTGTACATTATCCAGGGTAATCAAATCTACATCTACAAATCAGCAGCACATTACACTCTAATAGAGGGCTATCCTAAACCCCTGAAAGAAGAGCTGGGCATCGAGGGACCCGTGAATGCTGCATTTCTCTGTCCAAATCAACATGTGGTCCATGTTATAAAAGGTCAGAAAATGTTGGAAATTGATCTGACTGCAACTCCGAGAACTGTTAAAAAAGAACTTCCAATCACCATTGCACAAGTAGATGCTGCCATGTGTGACACTGATGGTGTGAAGGTGTACGTTGGCCCAGTGTACTACAAGTACCAGAGCCCTACCATCATGGCTGTTGCCAAAATCAGCCCAGCACCCCAAAAGATCTCACCTGAAAAGTTTAGCTGTGAGGCATAGAAAGCTCATATGAATTACAGCAAATGCTAATTAGTTGTAATTCTTTCATTCTTTGTGCATATGGAGTTTCTGcacatgaatataaaaataaactttgtaatttgtaa

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K18977 HPX; hemopexin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007259049.3 True 1494 mRNA 0.46 10 16803908 16816495

Neighbor

gene id symbol gene type direction distance location
LOC103036216 NA coding upstream 5018 16790748 ~ 16798890 (+)
LOC111188171 zc3h12c coding upstream 141563 16628689 ~ 16662345 (+)
LOC103036820 NA coding upstream 178324 16611601 ~ 16625584 (+)
LOC103037127 NA coding upstream 202873 16576843 ~ 16601035 (+)
LOC103038100 NA coding upstream 355419 16442958 ~ 16448489 (+)
vangl1 vangl1,LOC107552384,LOC107748077,LOC107588836 coding downstream 93153 16909648 ~ 17020202 (+)
poglut1 poglut1 coding downstream 232934 17049429 ~ 17060160 (+)
timmdc1 timmdc1 coding downstream 248907 17065402 ~ 17076913 (+)
LOC103032412 gk,LOC107742635,LOC107700103,LOC107667651 coding downstream 264706 17081201 ~ 17109560 (+)
LOC103032094 NA coding downstream 296815 17113310 ~ 17117221 (+)
G104082 LOC107662997,LOC107757412,LOC108434698,LOC107707084 non-coding upstream 116535 16682740 ~ 16687373 (+)
G104001 NA non-coding upstream 257898 16544256 ~ 16546010 (+)
LOC111193544 NA non-coding upstream 366276 16433809 ~ 16437632 (+)
G103972 NA non-coding upstream 544910 16258785 ~ 16258998 (+)
G103945 NA non-coding upstream 718064 16085643 ~ 16085844 (+)
G104144 NA non-coding downstream 44493 16860988 ~ 16861202 (+)
G104151 NA non-coding downstream 110729 16927224 ~ 16934483 (+)
G104162 NA non-coding downstream 230277 17046772 ~ 17047740 (+)
G104177 NA non-coding downstream 365801 17182296 ~ 17182538 (+)
G104183 LOC103030517,LOC108434725,LOC100705727,LOC101474240,LOC102192248,LOC103374257,LOC106510766 non-coding downstream 537934 17354429 ~ 17356491 (+)
LOC103037450 NA other upstream 229475 16555694 ~ 16574433 (+)
col17a1 col17a1,LOC108434660,LOC107684270,LOC107583183 other upstream 296121 16463938 ~ 16507787 (+)
G104000 NA other upstream 345699 16451175 ~ 16458209 (+)
LOC103032764 LOC108443686,LOC108258285,LOC107746061,LOC107684317,LOC107566138,LOC105891017,LOC107690754,LOC107086972 other upstream 1505969 14999455 ~ 15297939 (+)
G103561 NA other upstream 2111709 14691043 ~ 14692199 (+)
LOC103035065 nhlh2,LOC103035065,LOC108434665,LOC108258389,LOC107739819,LOC105019883 other downstream 71891 16888386 ~ 16894592 (+)
LOC103031769 prps2 other downstream 303352 17119847 ~ 17138973 (+)
LOC111193547 NA other downstream 590100 17406595 ~ 17419138 (+)
G104656 pcdh8 other downstream 2102565 18919060 ~ 18923203 (+)
nfkbiz nfkbiz other downstream 2917731 19734226 ~ 19744924 (+)

Expression


Co-expression Network