G53388


Basic Information

Item Value
gene id G53388
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 5522242 ~ 5540638 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU60796
ATTTCCTTCCCCTTTCAGTTCCTATTTCTCTAAAATAAGACTGAACACAACAGCATGTATAATATCTTAATTTTTATTTTAATGTTGAGAAGTGGGTTTTGTTACAAATCTCAAGTTCAGCGTGGCGTTGATGTGTCATTGCGATGTGAGGTCTCTTTCCTGTCTGAATCCTCAACATTGCAGTGGGAGAAAGACGGACAACAAACATCCAACACCACTCTACTGTACAACAACTCTGCCTACATCATCTTACACACCGTTGATGAACACAATAAAGGGGAATATTACTGTAGATTGATGGAAGATGGAAGAGTAAAAACTGTTAGGAATTACACGCTTACTGTCAGTTCAAATTCATGCAATAGAAATAATACAATTTACAGACAAAGCTCTAATAATAGTGACGTATTACTGGTCTGCAAGTCTGTCAAGAAGTACGAGAGATGGAAATGGACCTGGGAGCCGAGGCCTGATTCACAGATCATTGATCTGATAGCAGTTGAAAAAGGAGGAGAAGTTCAAGTAAAAGGACCAATTAAACCAGGAAGACTTTCTTCAACCATTTTCAATAGTCAACTTTTTATCTTTCACATCTCACCTTTGAACTTTAATTATAGTGGGACATACAGGTGTATTCCAAATGATCAAAAGATTCCCTACACAACCACAATGCTACACACCATCAGAGGTTTGCAAATATCAAT
>TU60799
ATTTCCTTCCCCTTTCAGTTCCTATTTCTCTAAAATAAGACTGAACACAACAGCATGTATAATATCTTAATTTTTATTTTAATGTTGAGAAGTGGGTTTTGTTACAAATCTCAAGTTCAGCGTGGCGTTGATGTGTCATTGCGATGTGAGGTCTCTTTCCTGTCTGAATCCTCAACATTGCAGTGGGAGAAAGACGGACAACAAACATCCAACACCACTCTACTGTACAACAACTCTGCCTACATCATCTTACACACCGTTGATGAACACAATAAAGGGGAATATTACTGTAGATTGATGGAAGATGGAAGAGTAAAAACTGTTAGGAATTACACGCTTACTGTCAGTTCAAGTTCCCAGAAGTGGTTCATCATAACTGGGTAATCTTCAATAGTGGTGAACAGGAGATAGTGACGTATCACTGGTCTGCAAGTCTGTCAAGAAGTACGAGAGATGGAAATTGACCTGGGAGCCGAGGCCTGATTCACAGATCATTGATCTGATAGCAGTTGAAAAAGGAGGAGAAGTTCAAGTAAAAGGACCAATTAAACCAGGAAGACTTTCTTCAACCATTTTCAATAGTCAACTTTTTATCTTTCACATCTCACCTTTGAACTTTAATTATAGTGGGACATACAGGTGTATTCCAAATGATCAAAAGATTCCCTACACAACCACAATGCTACACACCATCAGAGGTTTGCAAATATCAAT
>TU60788
TACTGGTCTGCAAGTCTGTCAAGAAGTACGAGAGATGGAAATGGACCTGGGAGCCGAGGCCTGATTCACAGATCATTGATCTGATAGCAGTTGAAAAAGGAAGAGAAGTTCTAGTAAAAGGACCAATTAAACCAGGAAGACTTTCTTCAACCACTTACAATGATCAACTTTTTATCTTTCACATCTCACCTGTGAACTTTAATTATAGTGGGACATACAGGTGTATTACAAATGATCAAAAGATTCCCTACACAACCACAATTCTACACACCATCAGAGTCTCAGTGGAGCCCCCTGATGGTGTGTTGAGGAATCAGTCAGTGATTCTTACCTGTGAAGTTTCTGAAGTGACTGATTCAGTGACGCTGGTCTGGCTCAGGATGGAGGGGAACAGAGGAGTGCTGGAAAAACAGCAAATTATGACTGAAAACAAGTTACAGCTCACAGTGAATCTATCCAGATATGAAACAGAGCCGCTGCACTGGCAGTGTGCAGTTTTTACTGAGAATAAACTCAGAGCTCTGGCCCCAATAACAATCAGTCTTTCCTCATCAACTACTAATGCTCCAAGTACATCAACAGAAACTCTAACAAATAATATTAATATACAGTATTTTTCACCTTTACTCAGAATAAGATTGTATAATTTCAGCCTACTAGCATACAAATAGTGATTTGTCAGTGTGTAGTCATGACACTGGTCAGTGTTGGTGTAATTATGTTTCTGCAGAAGACATCATGACACAGGACAGTCATCTACAGATGGTGATCGTCGTGGCGTGTGTTGTCACTGGCTGTGTGCTGATTCTGACGCTGGGACTTCTAGTTTTTAAACGTCAGCGAAAAACAGATGAAGGTCACGTCACTGGATTAAAATCACAAGAAGATGAGGACATCCATTATACTTCTGTAACAGTAGCAGGATCTAGTCAGGGAGCTGATAAACATGCGAGTTCAAAGGTGTTGGACAGGAATTCTACAGTCATCTACTCTGCTATTAAAGCACAGTGAGCATTCACACTGGAAATTCTTGTATAGAACTTTATTCCATTTTATTACTAAATGGAAATGAAAACACCAAATTAATTTTGTGTTAACAATAGCTTTCTAGTCATTCATTATTTTGGTATAGCCTATTAAAAATTACTTAAGTCTAATAATGAAGCATTTTCTATGTTCAAGTGCATATTGGGTATGCTCTCTCTGTAAGCAAAGGGTCTTTAGGTTTCATTTGCATTAGGAAACCAAAAATCTAACACCATCACTATCTCTTGAGTGTTGATCAATATAATTGCATGCCAGATCAAAACCTCATTGTGGTTTCAGAACACATAGCTGTGTTAAATATAGTACAGTATTTCCTGTTGTGGAAAACTGCAACAAATGTTTCAACTAACCAAAAGTTAGAATGAAAATATAGTGAGTTGCAAGCAACCATTTTAAACAGTGAAATATTAATAAAAAGAAGCCTGTTGTCACGTAGGTATATTGTCTGTGTTTGGTTCTTTGGGATTTGTTTATTTAGTTGTGTTTAGTCTCTGTGTATTTGGTTGCTATGGTTTCTTATTGATTGATCAGTCTTGTGACTTGTTTTA
>TU60795
TACTGGTCTGCAAGTCTGTCAAGAAGTACGAGAGATGGAAATGGACCTGGGAGCCGAGGCCTGATTCACAGATCATTGATCTGATAGCAGTTGAAAAAGGAAGAGAAGTTCTAGTAAAAGGACCAATTAAACCAGGAAGACTTTCTTCAACCACTTACAATGATCAACTTTTTATCTTTCACATCTCACCTGTGAACTTTAATTATAGTGGGACATACAGGTGTATTACAAATGATCAAAAGATTCCCTACACAACCACAATTCTACACACCATCAGAGTCTCAGTGGAGCCCCCTGATGGTGTGTTGAGGAATCAGTCAGTGATTCTTACCTGTGAAGTTTCTGAAGTGACTGATTCAGTGACGCTGGTCTGGCTCAGGATGGAGGGGAACAGAGGAGTGCTGGAAAAACAGCAAATTATGACTGAAAACAAGTTACAGCTCACAGTGAATCTATCCAGATATGAAACAGAGCCGCTGCACTGGCAGTGTGCAGTTTTTACTGAGAATAAACTCAGAGCTCTGGCCCCAATAACAATCAGTCTTTCCTCATCAACTACTAATGCTCCAAGTACATCAACAGAAACTCTAACAAATAATATTAATATACAGTATTTTTCACCTTTACTCAGAATAAGATTGTATAATTTCAGCCTACTAGCATACAAATAGTGATTTGTCAGTGTGTAGTCATGACACTGGTCAGTGTTGGTGTAATTATGTTTCTGCAGAAGACATCATGACACAGGACAGTCATCTACAGATGGTGATCGTCGTGGCGTGTGTTGTCACTGGCTGTGTGCTGATTCTGACGCTGGGACTTCTAGTTTTTAAACGTCAGCGAAAAACAGGAGCTGACAGCTGGTGTAAAATCAGTCATGCAAGTTCAGAGGATATGTTGGACTGCAGTACTACAGTCATCTATTCAGCACAGTGAACCTTCACACTGGAAATTCCTGTACAAAACCTTGTATTTCTTTTTTTTTTTTTTAAATTTCATTATTTAATGGAATTCAAAACATCAAACAAATATTGTTAATAACAGCAAGCTAGTCATGCATTATTTTGGTATATTAGGAATGAATGGAG
>TU60790
TGGAAAGAAGAATCATCATGCCACTTACACCTTTTAAAATCTTTATTTTGATGTGTGGATTTTGTTCCCGATTCCACGCTATCGAATATCCACAGAATAAAACTGCCCAAAAGGAAGTTCAGCGTGGCGTTGATGTGTCTTTGCGATGTGAGGTCTCTTTCCTGCCTGAATCCTCAACATTGCAGTGGGAGAAAGACGGACAACAAACATCCAACACCACTCTACTGTACAACAACTCTGCCTACATCATCTTACACACCGTTGATGAAAAGAATGAA
>TU60791
TGGAAAGAAGAATCATCATGCCACTTACACCTTTTAAAATCTTTATTTTGATGTGTGGATTTTGTTCCCGATTCCACGCTATCGAATATCCACAGAATAAAACTGCCCAAAAGGAAGTTCAGCGTGGCGTTGATGTGTCTTTGCGATGTGAGGTCTCTTTCCTGCCTGAATCCTCAACATTGCAGTGGGAGAAAGACGGACAACAAACATCCAACACCACTCTACTGTACAACAACTCTGCCTACATCATCTTACACACCGTTGATGAAAAGAATGAAGGGAAATATTACTGTAGATTGATGGAAAATGGAAGAGTAAAAACTGTAAGGATTCTTACGCTTACTGTCAGTTCAAATTCATATAATGGAAATAATAATAAAACAATTTACAGACTAAGCTCTAATAATAGTGACGTATCACTGGTCTGCAAGTCTGTCAAGAAGTACGAGAGATGGAAATTGACCTGGGAGCCGAGGCCTGATTCACAGATCATTGATCTGATAGCAGTTGAAAAAGGAGGAGAAGTTCAAGTAAAAGGACCAATTAAACCAGGAAGACTTTCTTCAACCATTTTCAATAGTCAACTTTTTATCTTTCACATCTCACCTTTGAACTTTAATTATAGTGGGACATACAGGTGTATTCCAAATGATCAAAAGATTCCCTACACAACCACAATGCTACACACCATCAGAGGTTTGCAAATATCAAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU60796 False 115 TUCP 0.35 1 5522242 5522356
TU60799 False 172 lncRNA 0.39 2 5522242 5530443
TU60788 False 745 lncRNA 0.38 3 5528678 5529631
TU60795 True 238 lncRNA 0.35 2 5540058 5540638
TU60790 False 117 lncRNA 0.42 2 5535245 5538095
TU60791 False 117 TUCP 0.38 2 5535245 5538095

Neighbor

gene id symbol gene type direction distance location
CI01000009_05502414_05506275 NA coding upstream 15967 5499971 ~ 5506275 (+)
CI01000009_05491807_05498189 TFCP2L1 coding upstream 23443 5491807 ~ 5498799 (+)
CI01000009_05418094_05487944 CLASP1, CLASP1A coding upstream 33741 5417979 ~ 5488501 (+)
CI01000009_05411199_05413237 NIFK coding upstream 108569 5411199 ~ 5413673 (+)
CI01000009_05384160_05398034 CACNB4A, CACNB4 coding upstream 124205 5384160 ~ 5398037 (+)
CI01000009_05685508_05688628 NA coding downstream 144870 5685508 ~ 5688633 (+)
CI01000009_05696405_05703318 NA coding downstream 155033 5695671 ~ 5703921 (+)
CI01000009_05704310_05721474 KLF7, KLF7A, KLF7B coding downstream 163355 5703993 ~ 5722006 (+)
CI01000009_05761849_05767932 CREB1, CREB1A, CREB1B coding downstream 220345 5760983 ~ 5768703 (+)
CI01000009_05772094_05781990 NA coding downstream 229985 5770623 ~ 5782227 (+)
G53383 NA non-coding upstream 112569 5409457 ~ 5409673 (+)
G53382 NA non-coding upstream 113478 5408444 ~ 5408764 (+)
G53338 NA non-coding upstream 120014 5399593 ~ 5402228 (+)
G53352 NA non-coding upstream 154292 5365850 ~ 5367950 (+)
G53257 NA non-coding upstream 477302 5044705 ~ 5044940 (+)
G53396 NA non-coding downstream 14132 5554770 ~ 5554990 (+)
G53402 NA non-coding downstream 32996 5573634 ~ 5573866 (+)
G53584 NA non-coding downstream 41819 5582457 ~ 5582685 (+)
G53632 NA non-coding downstream 201614 5742252 ~ 5742466 (+)
G53637 NA non-coding downstream 205937 5746575 ~ 5746951 (+)
CI01000009_03202999_03207060 MPC2, MPC2.S other upstream 2313258 3202207 ~ 3208984 (+)
G51529 NA other upstream 2459655 3062033 ~ 3062587 (+)
G51274 NA other upstream 3171756 2255099 ~ 2350486 (+)
CI01000009_01897343_01919208 PIKFYVE other upstream 3620816 1897343 ~ 1919516 (+)
G51122 NA other upstream 3840276 1680146 ~ 1681966 (+)
CI01000009_05931829_05943829 KCNH3 other downstream 319664 5931718 ~ 5943899 (+)
G53651 NA other downstream 704926 6245564 ~ 6248392 (+)
G56100 NA other downstream 3588662 9129300 ~ 9130286 (+)
CI01000009_09853929_09854476 SAP18 other downstream 4312721 9853929 ~ 9856587 (+)
CI01000009_11761868_11765848 ORMDL1.S, ORMDL1 other downstream 6220148 11761606 ~ 11766944 (+)

Expression


Co-expression Network