LOC103036820


Basic Information

Item Value
gene id LOC103036820
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 16611601 ~ 16625584 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007259054.3
acttttgcTTCTACAGTCAAATCGAAACTAACCAGAGGAAGACTTCATGTGGTGTAGACTCTGATCATTTAACCTCTTTATAGAAACATAAACTTCATCTACAATATGCAGTATATACAACTTTAATGCTGTGGTCGCATTATTTTCCACGGTTTTCCAAACTTTGGTGAGAGTTCAAAATGAAAGTCATTGTGATTCTGCTATTAAACTGGATAACAAGTGTTTCAGTGACCAGATGTACCGGACGGCAGATGGAGACATTCGCTGTGCAGGGTCAGGCTGTGAGGCTGGACTGTGATACAGACCAGGAGGACACGGAGGACACCTTCACCTACAGCTGGACTAAAGATAACCACACCATTAAATCAAGCCCCCGTTTACAATTACAGGACAGCTCATTGTggattttaaacacagtgttatcAGATAGCGGTCATTATGTTTGCACAAGCACAAATGGCTCAGAGAGCACAGAAACCAGCATATTTCTCTCTGTCGAAAAAGGACAATGCCCAAGAGCTCCAGAGACCAAACTGGCACTTGAAGGATCTAACATTATTCTGGCCTGTACTGAAGACCCCACTGAGATTCTGGGGAAGCTATTGCACATGGAGTGGTTAAAGGACTGTAAACCTACAGGAATGGAAGGCAGTAAAATTAGCCTCCATGTATCAATGAGCAGCATGGGTAACTACACTTGTATGGTCATCTTTGGATACGATGGACAAAACTACACTGTCTCTTCTACAATAGAGCTGGAAGTAGTGAACCGTGGTCCCATAGAAACGCCTAAAGTAATATATCCGCGTAACCACACTGTGCATACCAAACCAGgtgtgaaaaccaaGTTGGAGTGTTCTGTGTTCATTGGTTCAGAAAAGAATGACATTGAAGAGTCGCAGGTCTATTGGATGGTAGACAAAAATTTCACGGTGCAATATCCACAGCTTCGGGAAAACCTGACTATAGAAACGAGGGAGGATAATCAAATTTATGGCACTTCTACACTGTTCATTGCCAAAGTTCTTCCTGAATTTTTCGAAGTACCTTTCGAATGCACTATTCTGAGCCCAAGAGGAATGGACATGGGAGTGGTGTGGCTTAAACACGAGAAGCCATATACCATACAGGCAACACTGACCATTTTACTGGCCCTCATAGCAGTTGTTGTTGTGAACATTGTCCTGTTTGTTTTCTTCAGAACTGATATTATTTTGTGCTATCGTCAACTATGTGGCAAAAGCAGAAGACAGACGAAGGTGTACAATGCGTATGTGTGTTCCTGCCATGGTAATACCCCTGGTTCCACAGCAGAGGACTTGGCCCTGAGGATCTTACCTGATGTTTTGGAGCAGAAGCATGACCTCAAGCTGTTCATACACGGACGAGATGATGCAGAGAATGTTGCGGACATGGCTGGTGTGTTGAGCCAGAGCAAGGCGGTGTTGCTCATCCTTCCAGGATCACGTTCAGTCAATCAGCAAGAAGAAGAAAGCGCCATTCCTCTGAATCCAGGCCAAGAGACACTTGATGTctcacactgcagtgaactctaTTCTGTCATTGCTCAGTCCAGCGTTCCAGTAATTGTGGTTGAAGATGGTGAGAATGCTGATTACTCACTGTTGCCGGAATCCATCCAGTCTATTATTCAGAGGGATAGAGTGCTGAGGTGGAGCCCTGCAGTGCAACCCAATGGTCGTTTCTGGAAGCACCTCAGATATCATATAACCTAagtcaaataaacattttcaggTACTTGTTAGTACTTTAGAATCAGTTAACTTTTCATTATAACCTTAAAAGTGAATAGAATGGAGCTTGACTTTAAGCTTGAAATGAAAACCTGAAGCCATACCTGCCCATTGTGGGTTGAGATTATGGTAGGTTTTTTCCTTGGTGCACATAtttgtttcacatttattttcatttatttcgaTTATTTTGGCAACAAGTC
>XM_015608317.2
cttttgcTTCTACAGTCAAATCGAAACTAACCAGAGGAAGACTTCATGTGGTGTAGACTCTGATCATTTAACCTCTTTATAGAAACATAAACTTCATCTACAATATGCAGTATATACAACTTTAATGCTGTGGTCGCATTATTTTCCACGGTTTTCCAAACTTTGGTGAGAGTTCAAAATGAAAGTCATTGTGATTCTGCTATTAAACTGGATAACAAGTGTTTCAGTGACCAGATGTACCGGACGGCAGATGGAGACATTCGCTGTGCAGGGTCAGGCTGTGAGGCTGGACTGTGATACAGACCAGGAGGACACGGAGGACACCTTCACCTACAGCTGGACTAAAGATAACCACACCATTAAATCAAGCCCCCGTTTACAATTACAGGACAGCTCATTGTggattttaaacacagtgttatcAGATAGCGGTCATTATGTTTGCACAAGCACAAATGGCTCAGAGAGCACAGAAACCAGCATATTTCTCTCTGTCGAAAAAGGACAATGCCCAAGAGCTCCAGAGACCAAACTGGCACTTGAAGGATCTAACATTATTCTGGCCTGTACTGAAGACCCCACTGAGATTCTGGGGAAGCTATTGCACATGGAGTGGTTAAAGGACTGTAAACCTACAGGAATGGAAGGCAGTAAAATTAGCCTCCATGTATCAATGAGCAGCATGGGTAACTACACTTGTATGGTCATCTTTGGATACGATGGACAAAACTACACTGTCTCTTCTACAATAGAGCTGGAAGTAGTGAACCGTGGTCCCATAGAAACGCCTAAAGTAATATATCCGCGTAACCACACTGTGCATACCAAACCAGgtgtgaaaaccaaGTTGGAGTGTTCTGTGTTCATTGGTTCAGAAAAGAATGACATTGAAGAGTCGCAGGTCTATTGGATGGTAGACAAAAATTTCACGGTGCAATATCCACAGCTTCGGGAAAACCTGACTATAGAAACGAGGGAGGATAATCAAATTTATGGCACTTCTACACTGTTCATTGCCAAAGTTCTTCCTGAATTTTTCGAAGTACCTTTCGAATGCACTATTCTGAGCCCAAGAGGAATGGACATGGGAGTGGTGTGGCTTAAACACGAGAAGCCATATACCATACAGGCAACACTGACCATTTTACTGGCCCTCATAGCAGTTGTTGTTGTGAACATTGTCCTGTTTGTTTTCTTCAGAACTGATATTATTTTGTGCTATCGTCAACTATGTGGCAAAAGCAGAACAGGACAGACGAAGGTGTACAATGCGTATGTGTGTTCCTGCCATGGTAATACCCCTGGTTCCACAGCAGAGGACTTGGCCCTGAGGATCTTACCTGATGTTTTGGAGCAGAAGCATGACCTCAAGCTGTTCATACACGGACGAGATGATGCAGAGAATGTTGCGGACATGGCTGGTGTGTTGAGCCAGAGCAAGGCGGTGTTGCTCATCCTTCCAGGATCACGTTCAGTCAATCAGCAAGAAGAAGAAAGCGCCATTCCTCTGAATCCAGGCCAAGAGACACTTGATGTctcacactgcagtgaactctaTTCTGTCATTGCTCAGTCCAGCGTTCCAGTAATTGTGGTTGAAGATGGTGAGAATGCTGATTACTCACTGTTGCCGGAATCCATCCAGTCTATTATTCAGAGGGATAGAGTGCTGAGGTGGAGCCCTGCAGTGCAACCCAATGGTCGTTTCTGGAAGCACCTCAGATATCATATAACCTAagtcaaataaacattttcaggTACTTGTTAGTACTTTAGAATCAGTTAACTTTTCATTATAACCTTAAAAGTGAATAGAATGGAGCTTGACTTTAAGCTTGAAATGAAAACCTGAAGCCATACCTGCCCATTGTGGGTTGAGATTATGGTAGGTTTTTTCCTTGGTGCACATAtttgtttcacatttattttcatttatttcgaTTATTTTGGCAACAAGTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007259054.3 False 1957 mRNA 0.43 10 16611601 16625584
XM_015608317.2 True 1959 mRNA 0.43 10 16611602 16625584

Neighbor

gene id symbol gene type direction distance location
LOC103037127 NA coding upstream 10566 16576843 ~ 16601035 (+)
LOC103038100 NA coding upstream 163112 16442958 ~ 16448489 (+)
pdcd11 pdcd11,LOC104950700 coding upstream 193189 16388056 ~ 16418412 (+)
taf5 taf5,LOC102783881 coding upstream 228103 16372790 ~ 16383498 (+)
LOC103039552 NA coding upstream 286486 16321122 ~ 16325115 (+)
LOC111188171 zc3h12c coding downstream 3105 16628689 ~ 16662345 (+)
LOC103036216 NA coding downstream 165164 16790748 ~ 16798890 (+)
LOC103035380 NA coding downstream 178324 16803908 ~ 16816495 (+)
vangl1 vangl1,LOC107552384,LOC107748077,LOC107588836 coding downstream 284064 16909648 ~ 17020202 (+)
poglut1 poglut1 coding downstream 423845 17049429 ~ 17060160 (+)
G104001 NA non-coding upstream 65591 16544256 ~ 16546010 (+)
LOC111193544 NA non-coding upstream 173969 16433809 ~ 16437632 (+)
G103972 NA non-coding upstream 352603 16258785 ~ 16258998 (+)
G103945 NA non-coding upstream 525757 16085643 ~ 16085844 (+)
G103943 NA non-coding upstream 531441 16079730 ~ 16080160 (+)
G104082 LOC107662997,LOC107757412,LOC108434698,LOC107707084 non-coding downstream 57156 16682740 ~ 16687373 (+)
G104144 NA non-coding downstream 235404 16860988 ~ 16861202 (+)
G104151 NA non-coding downstream 301640 16927224 ~ 16934483 (+)
G104162 NA non-coding downstream 421188 17046772 ~ 17047740 (+)
G104177 NA non-coding downstream 556712 17182296 ~ 17182538 (+)
LOC103037450 NA other upstream 37168 16555694 ~ 16574433 (+)
col17a1 col17a1,LOC108434660,LOC107684270,LOC107583183 other upstream 103814 16463938 ~ 16507787 (+)
G104000 NA other upstream 153392 16451175 ~ 16458209 (+)
LOC103032764 LOC108443686,LOC108258285,LOC107746061,LOC107684317,LOC107566138,LOC105891017,LOC107690754,LOC107086972 other upstream 1313662 14999455 ~ 15297939 (+)
G103561 NA other upstream 1919402 14691043 ~ 14692199 (+)
LOC103035065 nhlh2,LOC103035065,LOC108434665,LOC108258389,LOC107739819,LOC105019883 other downstream 262802 16888386 ~ 16894592 (+)
LOC103031769 prps2 other downstream 494263 17119847 ~ 17138973 (+)
LOC111193547 NA other downstream 781011 17406595 ~ 17419138 (+)
G104656 pcdh8 other downstream 2293476 18919060 ~ 18923203 (+)
nfkbiz nfkbiz other downstream 3108642 19734226 ~ 19744924 (+)

Expression


Co-expression Network