taf5 (taf5,LOC102783881)


Basic Information

Item Value
gene id taf5
gene name taf5,LOC102783881
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 16372790 ~ 16383498 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007259060.3
CGTCTGTAGCTAGTAGTTTCCGCGCCTGGGGAGAAAATGGCGGCCGTGCAGGACGGAGGGAGCGAGCTGGAGGGCGAGAAAGAGCCGAAGCCCGAGCTCATGAACGATGGCTCCACGGCTCCGGCTGCAGCGCCGAGCTCCCGGCCGGAGGATCAGCAGACGCTGCTGGCCGTGCTGCAGTTCCTCAAGCGGAACAAGCTGATCGAGTCGGTGGACGCGCTGCGGCGGGAGGCGGGACTGGCGGACGAGCCGGAGGAAGCTCCGGGGAGCGAGGCTGCAGGAGGCGCCGGCGGAGCCGCGGCGGGGAGCGGGGAGCTCGGGGATGCGGGCGCGCTGCTCAGCCGGGTGTCTGGAGGCTCACAGAGCGCGGCGGCTCCGGCTCCGGCTAAAGGAGGAGATGACCAGCCGGACGTCAGCGTGGTTCTGTCAGCGTACAGTCAGCAGGGTGACCCATCCTTGTATCAGGTCTATTACAGCGGTTTGAAGAAGTTCATTGAATCTGTGCTGGACTGTCACAGGGCCGAGCTGTCGCAGCTCTTTTATCCACTCTTCGTGCACATGTACCTGGAGCTGGTCTACAACAACCATGAAAGTGAAGCCAAGTCTTTTTTTGAGAAGTTTAATGGGGACCAGGAGTGTTACTATCAGGACGACTTGCGGGTGCTCTCAGGCCTCACCAAGAAGGAGCACATGAAGGGCAACGAGACGTTGCTAGACTTCCGCACGAGCCGCTTCGTTTTGCGGATCTCCCGCGACTCCTACCAGCTGCTGAAGAGGCACCTGCAGGAGCGACAGAACAACCAGATCTGGAACATCATTCAGGAGCATCTCTACATCGACATCTTCGATGGCATGCCTCGCAGCAAGAGCCAGATAGACAGCATGTCCGGCAGTTTGGCGGGAGAGGCCAAACGGGAGGACAATAAGACCAAGGTGTACTATGGGCTGCTAAAGGAGCCGGAGATCGAGGTCCCTTTGGATGACGAGGACGAAGAGGCTGAGAATGAAGAGGGCAAACCCAAGAAGAAGAAACCTAAGAAAGACAGCATGGGCTCAAAAAGCAAGAAACAAGATCCTAATGCACCGCAGCAAAACAGGATTCCTCTTCCGGAGTTGAAGGACTCTGACAAGCTGGATAAAATCATGTACATGAAAGAAGCCACCAAAAGGATTCGGCTAGGACCAGAAAGCCTGCCCTCTATATGCTTCTACACGTTCCTCAATGCCTATCAGGGTCTGACAGCAGTGGATTTCACTGACGACTCCAGTCTGTTAGCAGGAGGTTTTGCCGATTCCACAGTGCGCGTGTGGAGTGTCACACCTAAGAAACTGCGCAAAGTCAAATCAGCAGCAGATCTCGGTATGATCGACAAGGAGTCTGACGATGTACTAGAAAGGATAATGGATGAGAAAACCGCCAGTGAATGCAAGATCCTGTACGGCCACAGTGGACCGGTATACGGCGTCAGCTTCAGTCCTGACAGAAACTACCTACTGTCCAGCTCTGAAGATGGCACAATCAGGCTTTGGAGTTTACAGACGTTCACCTGCCTAGTTGCGTATAAAGGACACAACTACCCAGTGTGGGACACTCAGTTTTCTCCATACGGTTACTATTTTGTGTCTGGAGGACACGACAGAGTGGCACGCTTGTGGGCAACTGACCACTACCAGCCACTTCGCATGTTTGCTGGCCATCTCGCTGACATCACCTGCACACGATTCCACCCAAACTCCAACTACGTGGCCACGGGGTCAGCTGACCGCACTATCCGCCTCTGGGATGTTTTAAATGGTCACTGCGTACGCGTCTTAACAGGTCACAAGGGCCCCATTCACTCTCTGGCATTTTCACCTAATGGAAAGTACCTAGCGTCTGGATCGACGGACGGCAGGGTTCTTTTGTGGGACATCGGCCACGGGCTTATGATTGGTGAACTAAAGGGTCACACGGACACAATATATGCTCTCAGGTTCAGCAGAGATGGCGAGATCCTAGCCTCAGGCTCTATGGACAATACAGTACGGTTATGGGATGCCATCAGGGCTTTTGATGATGTAGAAACAGATGACTTTACTGCAGCCACAGGCCATGTTCATTTACCTGACAATTCACAGGAGTTATTACTGGGAACATACCTCAGTAAATCCACACCCGTCATCCACCTCCATTTTACCAGACGCAACCTGCTACTATCTGCTGGTGCATACAACTCTCAATGACATTGCTATTGCAGTTCATACTGTTCAGTGTTGTGGAATTTACGCATTACTCCCCCTAACAGTGTATgcatttccatgtttttttttttttttaaagctctgctgaaccCAAATGAAAATTGAATGAAATGTCAATCTTAGGTTGGCtttaacttaattttatttgtttacacaTCACTGCCATGCAGGTTTTTTTGCCCTGTTTTCTCCCTCTTACCCCACCCTATTCTGTACAGTCTTTTATAATGGTGCccaatatgtaaataaaacattttctattat

Function

symbol description
taf5 Predicted to contribute to RNA polymerase II general transcription initiation factor activity. Predicted to be involved in transcription initiation from RNA polymerase II promoter. Predicted to be part of transcription factor TFIID complex. Orthologous to human TAF5 (TATA-box binding protein associated factor 5).

NR:

description
PREDICTED: transcription initiation factor TFIID subunit 5

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K03130 TAF5; transcription initiation factor TFIID subunit 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007259060.3 True 2505 mRNA 0.52 11 16372790 16383498

Neighbor

gene id symbol gene type direction distance location
LOC103039552 NA coding upstream 47675 16321122 ~ 16325115 (+)
LOC103039857 caly,LOC103039857,LOC108434710,LOC108258305,LOC105891014,LOC107583165,LOC107684294 coding upstream 118552 16236028 ~ 16254238 (+)
dmd LOC108439357 coding upstream 1708031 14410683 ~ 14664759 (+)
knl1 NA coding upstream 1963394 14388458 ~ 14409396 (+)
LOC103031792 LOC108439359,LOC107723198,LOC107564241,LOC107692626,LOC100334711 coding upstream 2042375 14308926 ~ 14330415 (+)
pdcd11 pdcd11,LOC104950700 coding downstream 4558 16388056 ~ 16418412 (+)
LOC103038100 NA coding downstream 59460 16442958 ~ 16448489 (+)
LOC103037127 NA coding downstream 193345 16576843 ~ 16601035 (+)
LOC103036820 NA coding downstream 228103 16611601 ~ 16625584 (+)
LOC111188171 zc3h12c coding downstream 245191 16628689 ~ 16662345 (+)
G103972 NA non-coding upstream 113792 16258785 ~ 16258998 (+)
G103945 NA non-coding upstream 286946 16085643 ~ 16085844 (+)
G103943 NA non-coding upstream 292630 16079730 ~ 16080160 (+)
G103940 NA non-coding upstream 321388 15993117 ~ 16051402 (+)
G103929 NA non-coding upstream 512068 15860511 ~ 15860722 (+)
LOC111193544 NA non-coding downstream 50311 16433809 ~ 16437632 (+)
G104001 NA non-coding downstream 160758 16544256 ~ 16546010 (+)
G104082 LOC107662997,LOC107757412,LOC108434698,LOC107707084 non-coding downstream 299242 16682740 ~ 16687373 (+)
G104144 NA non-coding downstream 477490 16860988 ~ 16861202 (+)
G104151 NA non-coding downstream 543726 16927224 ~ 16934483 (+)
LOC103032764 LOC108443686,LOC108258285,LOC107746061,LOC107684317,LOC107566138,LOC105891017,LOC107690754,LOC107086972 other upstream 1074851 14999455 ~ 15297939 (+)
G103561 NA other upstream 1680591 14691043 ~ 14692199 (+)
G103551 NA other upstream 1753708 14618635 ~ 14619082 (+)
G103490 LOC106510829 other upstream 2111251 14260625 ~ 14261539 (+)
G103376 zgc:77880,LOC108439367,LOC107692630,LOC107723165,LOC103363053,LOC107758853,LOC105904859,LOC107590776 other upstream 2437123 13929065 ~ 13935667 (+)
G104000 NA other downstream 67677 16451175 ~ 16458209 (+)
col17a1 col17a1,LOC108434660,LOC107684270,LOC107583183 other downstream 80440 16463938 ~ 16507787 (+)
LOC103037450 NA other downstream 172196 16555694 ~ 16574433 (+)
LOC103035065 nhlh2,LOC103035065,LOC108434665,LOC108258389,LOC107739819,LOC105019883 other downstream 504888 16888386 ~ 16894592 (+)
LOC103031769 prps2 other downstream 736349 17119847 ~ 17138973 (+)

Expression


Co-expression Network