LOC103039552


Basic Information

Item Value
gene id LOC103039552
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 16321122 ~ 16325115 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007259063.3
AGCAGTTGAGAGAACAGCGTTCTGTCAGAAAGTTTAGAGAAGCTCGGACCAGGACACGGATTTGTATAAGAGGTGGAGACAGGTGGAGAGCTACACCTGAGATTGCCCAGGTAACTCAGGTAAAGCTCGCGGTCCCATGCCCACAGGAGCTAGACGATGACCTCTCCCGAGGGAGCCTCACCTGTGGCTTTCGAACCCGCGGCAACCAAACACGGCAAACCGGAGAAGGAGGACAGCGAGGAGTGCAAGCCGAGAGAGATGGCGGTCGGGTCGGAGGCGAAGAGCAAGCCGAACCGCCACCCGTTCAGCGTGGAGTCGCTCATCTCCAAAACTACCAGCAGCAGCACCGCGCCACCACCGCCTCCAGGACCTTTATCTCCCCCAACACTGGGCCAGTACCCCCACAGGACTTACTTCACAGAGCAGAAAAGCAAAGTTTCGCTCCCTTTCCCCAACGTTTCGGACTGCACGACTAACGACGAGAGCGAGGACTCCAGCGACAAGGAACAGAGCACTTGGTTGAAGAACCCAGCCTTCAACTCCCCGCCGAggCACCCCAGTCCCCCGCCGTGCCACCTGCGCAAGCACAAGAGCAACCGGAAGCCGCGCACCCCCTTCACCACGGCGCAGCTGCTGTCGCTCGAGCGCAAGTTCCGGCAGAAGCAGTACCTGTCCATCGCGGAGCGCGCGGAGTTCTCGAGCGCGCTCAACCTCACCGAGACGCAGGTGAAGATCTGGTTCCAGAACCGGCGCGCTAAGGCCAAGCGGCTGCACGAGGCCGAACTGGAGAAGCTCAAGCTCGCCGCCAAGCCCGTGCTGCCAGCCCTCGCGCTGCCCTTCGCTTTCGGCGCGCACGCGGCGGCGTCTCCGGCCATGTACGGGAGCCCGGGGCCTGGACCTCGAGCCGCCGTAGCCATGCCCGGTTTATTCAGCTCACCATACGGAATGTATTATCTGTCTTAATGCGTGAAGACTTgacaatgtttgtttgttttttaataaaagcccTCGTGCACTTTCTAAGACTGCACGAGATGGACAAATTGCATCGGTGCAGCGGTGCACGCGGCTGAACACTTTAAAGTGGCTAAAGACAAGAATCCATTGTTGCGGTACAATGGCGTGTACCTTGTCGGGTGCATCCCTGGGCAAGGGGTGGACCAATTGTTTTGCTGCATTTTTACCATTATGCCttgaaatttacaaaaaaaaaaacacacataggtGACTTAAACCCTTTACCCGAACCCCGTTCCCGCCGGCGCGCCTTGTAACGTTTGAGTTAATGTGCGCGTGGTTATGTTGCAAAACCAACCCAAGACAGTAAATATATGCAGTACCTCTGACTGAACCCCACGTGCACGTTTTTCAGATGGTGTTTAGTTGGATCTCATGGAGATGCTTCTTTCGCCTTTGAGATTCAATAATTGATCAATTACTGCAATTATCGTAGCCTTGCACAGCAAGATCCCCCGGTTTTAGATGCTACATAAGAAAATcgtttttttactgatttaattTGTTAACTTGTTCAGTCAGGGTCTACATATAACCTACACTGTAAGTTATATGAGCTATCATGCCATAGAATaccttttttgcaaataaattgaTAACCCCCATCACACTAACTTTGTGCATTTAAGTTTAAGCAGGCGCATATTAATTCAGGCAGCAAGGTGTGTATCCTGCCCTGGCACACCTGATTGCACTCCATGACCAGAATCAACCACCCCTTAAAAAGAAGttaaagttttatttgtatttttatctaAAGTGAAGTCAATACTAGGGGATTTTGCTGTGTAAATAACTAAAAGAATGTCGAAGTGGAAAATGGAATGAATGCAGCCTACTGTGTGTATGAGTACgagggtgtgtatgtgtgtatgtttgtgtgaatATTCATGTTCATGCTCTTGTGGAGCAGTTCGAGCTGGATTAATTCAATAATATTGggatgtatataaaaaaaacctctggggTTGTCCGTCATGTGACGAGGAGTACTTACTGGCCTTATCTTAAAAAGTGCCTTTGAGAGACCAAATATTTATTAGTCAATAAAGATTATTCTTTTTAACATTGAA

Function

GO:

id name namespace
GO:0043049 otic placode formation biological_process
GO:0009953 dorsal/ventral pattern formation biological_process
GO:0031101 fin regeneration biological_process
GO:0048703 embryonic viscerocranium morphogenesis biological_process
GO:0043523 regulation of neuron apoptotic process biological_process

KEGG:

id description
K09341 MSX; homeobox protein MSX

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007259063.3 True 2090 mRNA 0.50 2 16321122 16325115

Neighbor

gene id symbol gene type direction distance location
LOC103039857 caly,LOC103039857,LOC108434710,LOC108258305,LOC105891014,LOC107583165,LOC107684294 coding upstream 66884 16236028 ~ 16254238 (+)
dmd LOC108439357 coding upstream 1656363 14410683 ~ 14664759 (+)
knl1 NA coding upstream 1911726 14388458 ~ 14409396 (+)
LOC103031792 LOC108439359,LOC107723198,LOC107564241,LOC107692626,LOC100334711 coding upstream 1990707 14308926 ~ 14330415 (+)
LOC103031172 LOC103031172,LOC108439360 coding upstream 2030963 14282927 ~ 14290159 (+)
taf5 taf5,LOC102783881 coding downstream 47675 16372790 ~ 16383498 (+)
pdcd11 pdcd11,LOC104950700 coding downstream 62941 16388056 ~ 16418412 (+)
LOC103038100 NA coding downstream 117843 16442958 ~ 16448489 (+)
LOC103037127 NA coding downstream 251728 16576843 ~ 16601035 (+)
LOC103036820 NA coding downstream 286486 16611601 ~ 16625584 (+)
G103972 NA non-coding upstream 62124 16258785 ~ 16258998 (+)
G103945 NA non-coding upstream 235278 16085643 ~ 16085844 (+)
G103943 NA non-coding upstream 240962 16079730 ~ 16080160 (+)
G103940 NA non-coding upstream 269720 15993117 ~ 16051402 (+)
G103929 NA non-coding upstream 460400 15860511 ~ 15860722 (+)
LOC111193544 NA non-coding downstream 108694 16433809 ~ 16437632 (+)
G104001 NA non-coding downstream 219141 16544256 ~ 16546010 (+)
G104082 LOC107662997,LOC107757412,LOC108434698,LOC107707084 non-coding downstream 357625 16682740 ~ 16687373 (+)
G104144 NA non-coding downstream 535873 16860988 ~ 16861202 (+)
G104151 NA non-coding downstream 602109 16927224 ~ 16934483 (+)
LOC103032764 LOC108443686,LOC108258285,LOC107746061,LOC107684317,LOC107566138,LOC105891017,LOC107690754,LOC107086972 other upstream 1023183 14999455 ~ 15297939 (+)
G103561 NA other upstream 1628923 14691043 ~ 14692199 (+)
G103551 NA other upstream 1702040 14618635 ~ 14619082 (+)
G103490 LOC106510829 other upstream 2059583 14260625 ~ 14261539 (+)
G103376 zgc:77880,LOC108439367,LOC107692630,LOC107723165,LOC103363053,LOC107758853,LOC105904859,LOC107590776 other upstream 2385455 13929065 ~ 13935667 (+)
G104000 NA other downstream 126060 16451175 ~ 16458209 (+)
col17a1 col17a1,LOC108434660,LOC107684270,LOC107583183 other downstream 138823 16463938 ~ 16507787 (+)
LOC103037450 NA other downstream 230579 16555694 ~ 16574433 (+)
LOC103035065 nhlh2,LOC103035065,LOC108434665,LOC108258389,LOC107739819,LOC105019883 other downstream 563271 16888386 ~ 16894592 (+)
LOC103031769 prps2 other downstream 794732 17119847 ~ 17138973 (+)

Expression


Co-expression Network