LOC103039857 (caly,LOC103039857,LOC108434710,LOC108258305,LOC105891014,LOC107583165,LOC107684294)


Basic Information

Item Value
gene id LOC103039857
gene name caly,LOC103039857,LOC108434710,LOC108258305,LOC105891014,LOC107583165,LOC107684294
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 16236028 ~ 16254238 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007259064.2
GTCGGAATACGGGTGTGAAATCCGGCATTGCCAGGGTAACCGTTGCACTGAGGGCTTTTTCTTCTCCTGAGATTTTCCGCAGGCAGCGACCGCAACGGTTATCTATCTACACCGAGAGACGACATGGTGAAGCTGGGCAGTTCTCTTGGCGAGAAGGTGGAGAGGGAGCCATCAATGGAGGATGGCTTTGATAACATCCCTCTGATCACACCGCTGGAGGTTAACCAGCTACAGAAGCCATTTCCAGACAAGGTGATTGTCAAAACAACAACTGAGTATCAACTGcagcagaagaaaaagaagaagctcTACGTGCCGAGCATTAAGAAGCTCAACATAAACCTTTATGGCGAGGTGTCAGAGAAGGTCAAGCTCACAGGACTAATTCTCATCACCCTGGCTTTCTTGGCGTGTCTGCTTCTGCTGGTTATGTATAAGGCCCTTTGGTATGACCAGCTAAGCTGCCCTGAGGGTTTTGTCTTGAAGCATAAGCACTGTACCCCTGCTGCTCTGGAGATGTACTACCCGGAACAGGAATCCGGCTCGAGGGGCAGCCTGTACACCGCCATCAGCCACCTCAACCAGGCCAAAAAGGCTCTCCCTGAGCTCTCCTCTCCATGGCTGCCCGTCATCAACGCCCTGAAGGAGGCCCAGAAGGCCAAAGAGGAGGCGGCCCACTCCCAGCAGTGAGGGCTGAGGGAAAAGGGCGTGTTCAGGTATGATGAAGAAGAGGCAGAGGCTTGGATCGACTGGACACTGAAGGAGGTGGTTGGGATGgttcagtttgtgtgtttgtttgaatGAATGTTTGGTGgagatgagagtgtgtgtgtgtgtgtatatgtatgtctgtgtgtgtgcaagccTTCGTTGATGTGTCGCAAGCATCCAGGCAAGATAAGATATATCTGTCTTTGAAGTGCTGAGTTTGAAACCAGTTTAAATCAGTAGCTCTGCATTGGAATCTACCTTACTCGTACTTGATGAAATAAAACCTTCTCAGCTGTTCAGCAGCAGCTTTCTCAGTGTATGAAATCATCACATGTAGATATTCGCAACCTGTTCTTAAAGCCAGCTTTAGAGCTTCACAGCGCTGACCTTCAACTCATTGTGGTTGTGCAGATGCATTCGTTTTTCTTCAGTGTTCGTGCTTCGTCATTTCCGAATGTCGTCCTTTAGGGGCTTTCACTCTTAGTTTAACGTGAACGTAACTTAGCTTAGTGAAAAACTGCATGGCCTGTAAAAACGTGctctaaagaactgcagtgcAAAACCAGAAAAGAGCACTCTCAACTTACAGCagcaacaacaataaaacatcCTCGTTTCACAACTTACATACAATGTAAAGCATATCATGGTCTAAAATTATATGTGTGAAATGCAGTGCCACTAAAAAGTTTGTgaattatttacagttttatgcatTTCTGTGTAAATCTAATCTTTGTTAAAGAGTCTTTGAATTAGATAAGGAGAAATAAGGCTGGGTGATGTggagaaaaatatttaatattaatatgataaTATGTAAGCAGTCCTTTTCACAATACACAGTATTAATCccagtattttaaaaataattcattaaagtaattaaagtaatgatggaaaaaaacatttccttaTATAAaccataaagaaaataaatacatataataggatatttatttcatttagttttaaaaCTAAATAGATATTTCAAAAAGGCTACCAGGTTCGAAAAGGTCTGCAAAATAATATGTACAAAAACGTTTGGCTTCCACTAGTCAGTGGAGGCAGTATTAAcatttagtattagtattaacaAGAAGTGTTAACTGAATTAAAACTTGAAATAATCTGTGTGAGATTACGTCAGTTAGAGATTcaaaatattagtttaaaaatatatttttttctttttttcaactgATAAAATAAAGAGCTCTGTATTTCAGGGTtcctgcaggtccttaaaaagtcttaacatgtcttaaattaaaaagcagggaaattaaggtcttaaatttactgttaatttgctgtaggtattacatttttgtaataCTGTGCGCTTAATGCCTGTGGGAAAGCacatgctaactttagcggtgagttagctaacattaccagaaaGAGgactagctaatgttagctaatgatatactaacattagcagcacgttatctagctacattactgggtaGAGAACTAGAGATCTGGATTTATAGAGAgatgcagaaatgtaatgtaaagggTCTACAAACATTTTAGCTGCACTGTATCCCCATAACCCATAATCCTCTTAAACACATTCTGCTACAACCCATCTCAACTCAACACCAGGTGATATAACTGTAGCTCACCCAGGTTTGCTTTTTGTGCATAGACATGCTCTCTCTGTTTAGGCATACCCACAGTACTCATGCTGACATTTTAGTATTCAGATTGAAGTAGAACCATCTgctgttcacacagccatgtaAATAGAAGAGTAAACCTTGCTGAATGTAATGTGAAACACAGGTGTGAAAAACTGGCTTTTGATATCGATTTAAATCTCACAGTGAAgttctctgtttatttgtttgtgtttgaacAGATACACAGAACACAAACCACCACCAGCAACcgtaaaagtattaaattaaaaccgTCCTGATAGGAGTGCTCAAGAATGTGAAATTAAACCCCAGTAAGAAGCTTTGTAAActcttgagtgtgtgtgtatttattgtttgtgttttaaaggaCGCTTAAAAGAATGTGCTAATTTAAAAACCACTGCTCATTACCATGTTCCCCTTACTTTTTTGATTGTATTACACATTCacatattttaacttaaaaaaagctgtttttattatttatttatttatttattttatttgtacagccttaaaatatttgttgtaattaattgcttgtttgtattatttttccaatatttATGAACCTGGAAACTCatttttggatttatttttgtatatttttgtgaaGATTTTTACTGGAAACGGGACGTTAGTGTAAGATTCTTTTACGAAGCAGCTACTGATGTTGATCATCCCACATTGTTAAATCATGTGTACGTGTGGCAAACTACTGTTATTCATCAGCTTCatctcactgaaataaagatttCCGTATTCAGC

Function

symbol description
caly Predicted to enable clathrin light chain binding activity. Predicted to be involved in clathrin coat assembly and endosomal transport. Predicted to act upstream of or within dopamine receptor signaling pathway. Predicted to be located in membrane. Predicted to be active in endosome. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in attention deficit hyperactivity disorder. Orthologous to human CALY (calcyon neuron specific vesicular protein).

NR:

description
neuron-specific protein family member 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007259064.2 True 3134 mRNA 0.39 5 16236028 16254238

Neighbor

gene id symbol gene type direction distance location
dmd LOC108439357 coding upstream 1571269 14410683 ~ 14664759 (+)
knl1 NA coding upstream 1826632 14388458 ~ 14409396 (+)
LOC103031792 LOC108439359,LOC107723198,LOC107564241,LOC107692626,LOC100334711 coding upstream 1905613 14308926 ~ 14330415 (+)
LOC103031172 LOC103031172,LOC108439360 coding upstream 1945869 14282927 ~ 14290159 (+)
LOC103033906 LOC108258922,LOC108439361,LOC107564279,LOC107692629,LOC107665976 coding upstream 1991972 14223980 ~ 14244056 (+)
LOC103039552 NA coding downstream 66884 16321122 ~ 16325115 (+)
taf5 taf5,LOC102783881 coding downstream 118552 16372790 ~ 16383498 (+)
pdcd11 pdcd11,LOC104950700 coding downstream 133818 16388056 ~ 16418412 (+)
LOC103038100 NA coding downstream 188720 16442958 ~ 16448489 (+)
LOC103037127 NA coding downstream 322605 16576843 ~ 16601035 (+)
G103945 NA non-coding upstream 150184 16085643 ~ 16085844 (+)
G103943 NA non-coding upstream 155868 16079730 ~ 16080160 (+)
G103940 NA non-coding upstream 184626 15993117 ~ 16051402 (+)
G103929 NA non-coding upstream 375306 15860511 ~ 15860722 (+)
G103875 NA non-coding upstream 655932 15579153 ~ 15580096 (+)
G103972 NA non-coding downstream 4547 16258785 ~ 16258998 (+)
LOC111193544 NA non-coding downstream 179571 16433809 ~ 16437632 (+)
G104001 NA non-coding downstream 290018 16544256 ~ 16546010 (+)
G104082 LOC107662997,LOC107757412,LOC108434698,LOC107707084 non-coding downstream 428502 16682740 ~ 16687373 (+)
G104144 NA non-coding downstream 606750 16860988 ~ 16861202 (+)
LOC103032764 LOC108443686,LOC108258285,LOC107746061,LOC107684317,LOC107566138,LOC105891017,LOC107690754,LOC107086972 other upstream 938089 14999455 ~ 15297939 (+)
G103561 NA other upstream 1543829 14691043 ~ 14692199 (+)
G103551 NA other upstream 1616946 14618635 ~ 14619082 (+)
G103490 LOC106510829 other upstream 1974489 14260625 ~ 14261539 (+)
G103376 zgc:77880,LOC108439367,LOC107692630,LOC107723165,LOC103363053,LOC107758853,LOC105904859,LOC107590776 other upstream 2300361 13929065 ~ 13935667 (+)
G104000 NA other downstream 196937 16451175 ~ 16458209 (+)
col17a1 col17a1,LOC108434660,LOC107684270,LOC107583183 other downstream 209700 16463938 ~ 16507787 (+)
LOC103037450 NA other downstream 301456 16555694 ~ 16574433 (+)
LOC103035065 nhlh2,LOC103035065,LOC108434665,LOC108258389,LOC107739819,LOC105019883 other downstream 634148 16888386 ~ 16894592 (+)
LOC103031769 prps2 other downstream 865609 17119847 ~ 17138973 (+)

Expression


Co-expression Network