LOC103038624 (zgc:77849,LOC103038624,LOC108439082,LOC107722949,LOC107692663,LOC107590708,LOC107564565)


Basic Information

Item Value
gene id LOC103038624
gene name zgc:77849,LOC103038624,LOC108439082,LOC107722949,LOC107692663,LOC107590708,LOC107564565
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 22810079 ~ 22820096 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007260264.3
GTTGTTTTCGCTTcgctttcctcctcctcttgctAGTTTTGTTTGTGAGCCGGCAGAGAGGAGAAGACGACGGACGGACCGACCGACAGACTCGCAGACAGACGGACTATGGCACTCAGAGTCTAGGTCTCCGCACACACAGCTGTCGGATGAGGCGTCGTTTAGAAACAGCAGCGGTGAAATTGTGAACAGACGAGCGACAGACGACAGTAGGAAGCCGGTGCGAGAGTCGTGTTCGTCGGCAGCgatggaggagaagaaggaggagagcGAGGCGGAGATCCAGGAGCACGGACCCGAGCACTGGTTCTCCAAATGGGAGCGGCAGTGCCTGGCCGAGGCCGAGCAGGACGAGCAGAGCGAGGAGGACGTGGACCAGAGCCAGCAGAAACTCTGGCACCTCTTCCAGAACTCCGCCACGGCGGTCGCCCAGCTTTATAAAGATAGAGTTTGTCAGCAACAAGGGCTTTCTTTGTGGGTTCCTTTTCAAAATGCTGCTACTGCCGTCACCAACCTCTACAAAGAGAGTGTGGAGGCCCACCAGAGAAGCTACGAGCTTGGCATTCAGATTGGCCACCAGCGGCGGAACAAAGATGTGCTGGCCTGGGTAAAGAAGAGGAGGCGGACCATCCGCCGAGAAGACCTTATTAGTTTCCTGTGTGGCAAGGCCCCACCACCCCGCAACTCTAGGGCCCCACCTAGACTGGCCATGGTGTCGCCCAGCCGGCCTGCGTCCTCGGAAACCAGCTCATCCGTGGAGACGGACCTGCAGCCTTTCAGGGAGGCCATTGCTCTGCATGGCCTAAGTGGTGCCATGGCAAGCATCAGTATGCGCTCTGGAGCCCCAGGCTCGCCCACACACCTGAGCGCCAGCTCAGCCCCTGGGCGCCGCAGGAACGGCCTCCACGACGTCGACCTCAACACCTTCATAGCTGAGGAAATGGCGCTCCACCTGGACAATGGCACTCGGAAACGAAGCTCCGCCCAGTGCAATGACGTCATCACAGACTCACCCACCCACAAGCGCAATAGGATGATCTGAGCTCTCGCGACCGGAGAAAAAATATCGCAGAAAacaaagttaaagtaaagtaacagaaaaaaaaagttaaataaaagcgAAAAGAAGCCACTCCTCAAGTCATCCTCCCATCTTTACTCTGACCGGCAGCCGACTTATTCAGATAATTGACCTACGATTGGCCGAAAGAGCCCAGTGGGGTCACAATGGGAGGCGGAGCTCAGTGCAGAGGCCGAAGTGCCCTTCCATATGATTTACGTCTACATAAACACAACATGCACATGTGCGcgcccacacacaaacacacacaaacgtaCCCTACATTCACTCTGGTTCTGTTTATGTCTGGTGGAACATCTCGAGTCTATGAGGTGGCATTAACTAAGGTGCAGGAGAAGGAGAACCGTGTGCAGATTAAGGGCAGAGTGTCATTCTGTGCTGATGTGAGAGCGTGTGCATGTGTAGCAAGTGTGTATACATCTATACGTGTGTAAGActctttgtgtatgtgtgtatgtatgtatgtatgtatgtatgtatgtgtgtgagagtgagggagtgagcgATTGAGAGAGGTGTACCGTGTGTGAGAGTGCACGAGGTTCCTGCCTCTTCCAACAGCGCCTGTCACTGCCCCAGCTCTCAGCTACCACACTGCGGCTTAAAGAGCAACAAAggctttgtgtattttttttttttttaagtattatttacgatgatattttatttgtttttggttttgccATCTTATTGCTGCTCCAGTAGCAGGCACAAGTGCTCTGATAgctgtacttaactgtactgaGCACGACCTTGAATCACTTACTTTTCTTCTCTTATGAAATTCTTCTCTTATGAAATTCATCCTCTCTCTATGCGTTCATTCTATCACccctttccccctctctctttttctctcccatatcccctctctctctctgctccttCCCAGCACCTTTGTCTCCAGTGTAAcattatgtaatgtaaataactGTAGGTGCTGACATAGACTTGTGGTACATATTGTAAAAAAGAGCTGTGCAGAGACCATTGAATTGTTAATGTACAATAATGATTCTTGCATTAAAGAAATCAAGCTTTTAACTATC
>XR_002650601.1
GTTGTTTTCGCTTcgctttcctcctcctcttgctAGTTTTGTTTGTGAGCCGGCAGAGAGGAGAAGACGACGGACGGACCGACCGACAGACTCGCAGACAGACGGACTATGGCACTCAGAGTCTAGGTCTCCGCACACACAGCTGTCGGATGAGGCGTCGTTTAGAAACAGCAGCGGTGAAATTGTGAACAGACGAGCGACAGACGACAGTAGGAAGCCGGTGCGAGAGTCGTGTTCGTCGGCAGCgatggaggagaagaaggaggagagcGAGGCGGAGATCCAGGAGCACGGACCCGAGCACTGGTTCTCCAAATGGGAGCGGCAGTGCCTGGCCGAGGCCGAGCAGGACGAGCAGAGCGAGGAGGACGTGGACCAGAGCCAGCAGAAACTCTGGCACCTCTTCCAGAACTCCGCCACGGCGGTCGCCCAGCTTTATAAAGATAGAGTTTGTCAGCAACAAGGGCTTTCTTTGTGGGTTCCTTTTCAAAATGCTGCTACTGCCGTCACCAACCTCTACAAAGAGAGTGTGGAGGCCCACCAGAGAAGCTACGAGCTTGGCATTCAGATTGGCCACCAGCGGCGGAACAAAGATGTGCTGGCCTGGGTAAAGAAGAGGAGGCGGACCATCCGCCGAGAAGACCTTATTAGTTTCCTGTGTGGCAAGGCCCCACCACCCCGCAACTCTAGGGCCCCACCTAGACTGGCCATGGTGTCGCCCAGCCGGCCTGCGTCCTCGGAAACCAGCTCATCCGTGGAGACGGACCTGCAGCCTTTCAGGGAGGCCATTGCTCTGCATGGCCTAAGTGGTGCCATGGCAAGCATCAGTATGCGCTCTGGAGCCCCAGGCTCGCCCACACACCTGAGCGCCAGCTCAGCCCCTGGGCGCCGCAGGAACGGCCTCCACGACGTCGACCTCAACACCTTCATAGCTGAGGAAATGGCGCTCCACCTGGACAATGGCACTCGGAAACGAAGCTCCGCCCAGTGCAATGACGTCATCACAGACTCACCCACCCACAAGCGCAATAGGATGATCTGAGCTCTCGCGACCGGAGAAAAAATATCGCAGAAAacaaagttaaagtaaagtaacagaaaaaaaaagttaaataaaagcgAAAAGAAGCCACTCCTCAAGTCATCCTCCCATCTTTACTCTGACCGGCAGCCGACTTATTCAGATAATTGACCTACGATTGGCCGAAAGAGCCCAGTGGGGTCACAATGGGAGGCGGAGCTCAGTGCAGAGGCCGAAGTGCCCTTCCATATGATTTACGTCTACATAAACACAACATGCACATGTGCGcgcccacacacaaacacacacaaacgtaCCCTACATTCACTCTGGTTCTGTTTATGTCTGGTGGAACATCTCGAGTCTATGAGGTGGCATTAACTAAGGTGCAGGAGAAGGAGAACCGTGTGCAGATTAAGGGCAGAGTGTCATTCTGTGCTGATGTGAGAGCGTGTGCATGTGTAGCAAGTGTGTATACATCTATACGTGTGTAAGActctttgtgtatgtagtgagggagtgagcgATTGAGAGAGGTGTACCGTGTGTGAGAGTGCACGAGGTTCCTGCCTCTTCCAACAGCGCCTGTCACTGCCCCAGCTCTCAGCTACCACACTGCGGCTTAAAGAGCAACAAAggctttgtgtattttttttttttttaagtattatttacgatgatattttatttgtttttggttttgccATCTTATTGCTGCTCCAGTAGCAGGCACAAGTGCTCTGATAgctgtacttaactgtactgaGCACGACCTTGAATCACTTACTTTTCTTCTCTTATGAAATTCTTCTCTTATGAAATTCATCCTCTCTCTATGCGTTCATTCTATCACccctttccccctctctctttttctctcccatatcccctctctctctctgctccttCCCAGCACCTTTGTCTCCAGTGTAAcattatgtaatgtaaataactGTAGGTGCTGACATAGACTTGTGGTACATATTGTAAAAAAGAGCTGTGCAGAGACCATTGAATTGTTAATGTACAATAATGATTCTTGCATTAAAGAAATCAAGCTTTTAACTATC

Function

symbol description
zgc:77849 Acts upstream of or within cellular response to xenobiotic stimulus. Orthologous to human C16orf72 (chromosome 16 open reading frame 72).

NR:

description
UPF0472 protein C16orf72 homolog

GO:

id name namespace
GO:0071466 cellular response to xenobiotic stimulus biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007260264.3 True 2130 mRNA 0.51 4 22810079 22820096
XR_002650601.1 False 2091 misc_RNA 0.51 5 22810079 22820096

Neighbor

gene id symbol gene type direction distance location
LOC103039247 LOC108439081 coding upstream 35872 22762438 ~ 22774207 (+)
LOC103041008 slc29a4,LOC108439098 coding upstream 120991 22671713 ~ 22689088 (+)
LOC103042343 NA coding upstream 178365 22619030 ~ 22631714 (+)
LOC103042026 mief2,LOC107725398,LOC107564637,LOC108258856,LOC107692671 coding upstream 193121 22601210 ~ 22616958 (+)
alkbh5 alkbh5 coding upstream 210225 22592638 ~ 22599854 (+)
LOC103045101 NA coding downstream 462635 23282731 ~ 23286928 (+)
LOC103044794 NA coding downstream 472097 23292193 ~ 23305156 (+)
prkcb prkcb,LOC101478005,LOC108258960 coding downstream 493536 23313632 ~ 23390445 (+)
cacng3 cacng3,LOC108439097,LOC108258515 coding downstream 580175 23400271 ~ 23410018 (+)
LOC103041889 NA coding downstream 614771 23434867 ~ 23439103 (+)
G105668 NA non-coding upstream 18898 22779270 ~ 22791181 (+)
G105654 NA non-coding upstream 103274 22706500 ~ 22706805 (+)
G105645 NA non-coding upstream 117616 22691651 ~ 22692463 (+)
G105581 LOC103043780 non-coding upstream 319337 22488238 ~ 22490742 (+)
G105580 NA non-coding upstream 343280 22409426 ~ 22466799 (+)
G105760 LOC108439083,LOC107725390,LOC107692695,LOC107722958,LOC107564541,LOC107590710 non-coding downstream 105021 22925117 ~ 22928356 (+)
G105793 NA non-coding downstream 307859 23127955 ~ 23128154 (+)
G105796 NA non-coding downstream 321298 23141394 ~ 23141901 (+)
G105801 NA non-coding downstream 332482 23152578 ~ 23152812 (+)
G105802 NA non-coding downstream 334339 23154435 ~ 23154788 (+)
LOC103045705 LOC107725350,LOC107692700,LOC108439093,LOC107565240,LOC108441473 other upstream 221118 22525257 ~ 22588961 (+)
LOC103046939 LOC107701771,LOC107725347,LOC107565259 other upstream 526626 22255085 ~ 22283453 (+)
G105357 NA other upstream 1440875 21327192 ~ 21369204 (+)
G105276 NA other upstream 1754596 20989273 ~ 21055483 (+)
G105312 abcb6,abcb6a,LOC107556273,LOC107750068 other upstream 1781089 21019038 ~ 21028990 (+)
G106017 si:ch73-12o23.1,LOC108439175,LOC108258846,LOC107722961,LOC107590719 other downstream 1095539 23915635 ~ 23923771 (+)
G106036 NA other downstream 1167111 23987207 ~ 23989592 (+)
G106146 NA other downstream 1591112 24411208 ~ 24413098 (+)
LOC111193563 NA other downstream 2541648 25361744 ~ 25369439 (+)
LOC111193565 NA other downstream 2638719 25458815 ~ 25570821 (+)

Expression


Co-expression Network