cacng3 (cacng3,LOC108439097,LOC108258515)


Basic Information

Item Value
gene id cacng3
gene name cacng3,LOC108439097,LOC108258515
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 23400271 ~ 23410018 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007260282.2
CACAGTTCTGGTGTCTTCACATTAAGGGGACAGATTCTCTTGGATCTCAACTCTTCCTTTCCCTTCCTCACCTACTAATTCAGAGCAATGGGACAGAACTTCACCTGTGTCTGTGAAAATGACCTGAGGTCACCACTGCTGGTTCCAAGTGGATAAATGAGGTGCAGAAATGAGTGGATGTGACTGAGAGGAAACATGAGGGTGTGCAATCGTGGAGTGCAAATGCTCGTCACCACGGCAGGGGCTTTTGCAGCCTTCAGCCTGATGACCATCGCTGTGGGAACGGACTACTGGCTCTACTCGCCTGGGGTCTGCCGGACCAAGGGTTCCAGTGACAACGACACGACTCGCAAGAACGAGGAGGTGCTCACACACTCCGGGCTTTGGCGCCAGTGTTGTATGGAAGGCATGTTCACAGGTGTGTGTAAAAACATTGATCACTTCCCGGAAGACGCAGACTACGAACAGGATGCAGCGGAATATCTGCTCCGGGCAGTCCGTGCCTCCAGTCTTTTCCCCATCATGAGTGTGGGGCTGCTGTTTATcggcggtgtgtgtgtggctgccagTGAATTCTACAAGAGTCGCCACAACGTCATCCTGAGCGCTGGGATTTTTTTCGTCTCAGCTGGCCTCAGCAACATTATCGGCATCATTGTGTACATCTCGTCCAACGCGGGCGACCCCAACCAGAGCGAGTCCAAGCGGAGCCACTGGTACGGCTGGAGCTTCTACTGTGGTGCGCTGTCCTTCATCATCGCCGAGACGGTGGGCGTGCTCACCGTGCACCTCTTCATAGACACGCACCGTGCACTGCGTGCAAGCTCCCGCCGCTCGCTCCGCCCCCGCTCCCGCCAGTCCTCGCTGCAGCGCCGCCTCTCCTCGGGCTCCTTTCGCTCACGTTCTCGAGACCTCGCCCTCTATCCACTTGCAGCCACGCCCCCCGTGCTGACACGCAACTCTCTCGTCTATGGCCGTGGGAGCTTTGCACGGTTTCACCACGCAGCCATCGCCGACGAGGGCTTGGCCTTGGTTGGTGCGGGCGTGGGCATGGGGGCACGAGCGCTCCTGCCCCAAAGTGCTGTTGCACCACTGGATAACGGGCTGCCTCCAGCGTTGCTCATGGCTGCTCATGTGCGGAGCCCAGTGGAGATGGCCGGAGTGCCCAGTCTGGAGCGCTGCAAGCAGAACTCAAGCCACCCGGTTGGTCAAAATCCACAGCATGCATCAGATCCACCAAAGGAGGGTACACTCTCGCCTCCAAGTGGCACAGCCACGAGGAGAACCACACCAGTGTGAGGAAGACTTGTGTGACTATGTGATACTATGAATGACAGCTCTTGGCCTCAAATGCAACCATGGATATTTTCACTCGCTCACTTCTCTTTACAGAATTAGAGAATTAAAATGTTCCTCTGATGTTCCTCTAAATTTTACATTCCTGATctccctttcagacctgaaaaaGCAATGTTTGAGTATAGTGAATCCATCACTCACCAAACATTGAAATCTACAGGgggtggacaatgaaactaattgcaccagtaagagcagagtgtgaag

Function

symbol description
cacng3 Predicted to enable channel regulator activity and voltage-gated calcium channel activity. Predicted to be involved in several processes, including neurotransmitter receptor internalization; postsynaptic neurotransmitter receptor diffusion trapping; and protein transport. Predicted to be located in somatodendritic compartment. Predicted to be part of AMPA glutamate receptor complex. Predicted to be active in glutamatergic synapse and postsynaptic density membrane. Predicted to be integral component of postsynaptic density membrane. Implicated in childhood absence epilepsy and macular degeneration.

NR:

description
PREDICTED: voltage-dependent calcium channel gamma-3 subunit-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007260282.2 True 1566 mRNA 0.55 4 23400271 23410018

Neighbor

gene id symbol gene type direction distance location
prkcb prkcb,LOC101478005,LOC108258960 coding upstream 9826 23313632 ~ 23390445 (+)
LOC103044794 NA coding upstream 95115 23292193 ~ 23305156 (+)
LOC103045101 NA coding upstream 113343 23282731 ~ 23286928 (+)
LOC103039247 LOC108439081 coding upstream 626064 22762438 ~ 22774207 (+)
LOC103041008 slc29a4,LOC108439098 coding upstream 711183 22671713 ~ 22689088 (+)
LOC103041889 NA coding downstream 24849 23434867 ~ 23439103 (+)
LOC107197111 NA coding downstream 44438 23454456 ~ 23459515 (+)
plk1 plk1,LOC107722962 coding downstream 70438 23480456 ~ 23490205 (+)
chtf18 chtf18,LOC107725360 coding downstream 114698 23524716 ~ 23552698 (+)
LOC103035907 NA coding downstream 222361 23632379 ~ 23638888 (+)
G105872 NA non-coding upstream 2409 23390733 ~ 23397862 (+)
G105804 NA non-coding upstream 148455 23179282 ~ 23251816 (+)
G105803 NA non-coding upstream 165219 23178637 ~ 23235052 (+)
G105802 NA non-coding upstream 245483 23154435 ~ 23154788 (+)
G105801 NA non-coding upstream 247459 23152578 ~ 23152812 (+)
G105879 NA non-coding downstream 1265 23411283 ~ 23412044 (+)
G105891 ndufab1,LOC107590767 non-coding downstream 35856 23445874 ~ 23453226 (+)
G105906 NA non-coding downstream 84057 23494075 ~ 23496556 (+)
G105940 ubn1 non-coding downstream 170137 23580155 ~ 23586217 (+)
G105974 NA non-coding downstream 238412 23648430 ~ 23648659 (+)
LOC103038624 zgc:77849,LOC103038624,LOC108439082,LOC107722949,LOC107692663,LOC107590708,LOC107564565 other upstream 580175 22810079 ~ 22820096 (+)
LOC103045705 LOC107725350,LOC107692700,LOC108439093,LOC107565240,LOC108441473 other upstream 811310 22525257 ~ 22588961 (+)
LOC103046939 LOC107701771,LOC107725347,LOC107565259 other upstream 1116818 22255085 ~ 22283453 (+)
G105357 NA other upstream 2031067 21327192 ~ 21369204 (+)
G105312 abcb6,abcb6a,LOC107556273,LOC107750068 other upstream 2371281 21019038 ~ 21028990 (+)
G106017 si:ch73-12o23.1,LOC108439175,LOC108258846,LOC107722961,LOC107590719 other downstream 505617 23915635 ~ 23923771 (+)
G106036 NA other downstream 577189 23987207 ~ 23989592 (+)
G106146 NA other downstream 1001190 24411208 ~ 24413098 (+)
LOC111193563 NA other downstream 1951726 25361744 ~ 25369439 (+)
LOC111193565 NA other downstream 2048797 25458815 ~ 25570821 (+)

Expression


Co-expression Network