Gene
RNA
| Item | Value |
|---|---|
| gene id | G53556 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000009 |
| NCBI id | null |
| chromosome length | 16003125 |
| location | 5539205 ~ 5546637 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU60995 | True | 282 | lncRNA | 0.42 | 2 | 5539205 | 5546637 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000009_05513478_05515588 | NA | coding | downstream | 23617 | 5513269 ~ 5515588 (-) |
| CI01000009_05402729_05410456 | NA | coding | downstream | 128749 | 5402504 ~ 5410456 (-) |
| CI01000009_05367161_05370504 | PTPLB, HACD2, DKFZP459B2333 | coding | downstream | 168701 | 5365766 ~ 5370504 (-) |
| CI01000009_05362086_05363378 | NA | coding | downstream | 175124 | 5362042 ~ 5364081 (-) |
| CI01000009_05278137_05361256 | ADCY5 | coding | downstream | 177727 | 5277137 ~ 5361478 (-) |
| CI01000009_05571226_05587885 | NA | coding | upstream | 23864 | 5570501 ~ 5588015 (-) |
| CI01000009_05675971_05682578 | NA | coding | upstream | 129135 | 5675772 ~ 5683383 (-) |
| CI01000009_05724421_05725824 | NA | coding | upstream | 177204 | 5723841 ~ 5725834 (-) |
| CI01000009_05759177_05759509 | NA | coding | upstream | 212362 | 5758999 ~ 5759770 (-) |
| CI01000009_05784097_05785842 | FZD5 | coding | upstream | 237428 | 5784065 ~ 5785842 (-) |
| G53514 | NA | non-coding | downstream | 30416 | 5506972 ~ 5508789 (-) |
| G53515 | NA | non-coding | downstream | 35815 | 5502395 ~ 5505248 (-) |
| G53511 | NA | non-coding | downstream | 40210 | 5491811 ~ 5498995 (-) |
| G53545 | NA | non-coding | downstream | 62465 | 5474236 ~ 5476740 (-) |
| G53510 | NA | non-coding | downstream | 130861 | 5407998 ~ 5408344 (-) |
| G53566 | NA | non-coding | upstream | 6253 | 5552890 ~ 5553101 (-) |
| G53916 | NA | non-coding | upstream | 38402 | 5585039 ~ 5596678 (-) |
| G53988 | NA | non-coding | upstream | 183997 | 5730634 ~ 5730864 (-) |
| G53997 | NA | non-coding | upstream | 199938 | 5746575 ~ 5746788 (-) |
| G54000 | NA | non-coding | upstream | 205303 | 5751940 ~ 5752165 (-) |
| G52828 | NA | other | downstream | 1307736 | 4217420 ~ 4231469 (-) |
| CI01000009_03261739_03262843 | NA | other | downstream | 2277248 | 3261038 ~ 3262843 (-) |
| CI01000009_02885473_02893975 | NA | other | downstream | 2639798 | 2883688 ~ 2893975 (-) |
| G52410 | NA | other | downstream | 2976672 | 2551724 ~ 2562533 (-) |
| G55814 | NA | other | upstream | 2879184 | 8425821 ~ 8428012 (-) |
| CI01000009_08858198_08860555 | NA | other | upstream | 3311515 | 8856310 ~ 8860563 (-) |
| G59097 | NA | other | upstream | 6741580 | 12288217 ~ 12289518 (-) |
| CI01000009_13975122_13976026 | NA | other | upstream | 8428751 | 13975099 ~ 13978614 (-) |
| G59490 | NA | other | upstream | 8486927 | 14033564 ~ 14037873 (-) |
