LOC103028654 (rab1a,LOC108436370,LOC105021598,LOC107676578,LOC107666439,LOC106585917)


Basic Information

Item Value
gene id LOC103028654
gene name rab1a,LOC108436370,LOC105021598,LOC107676578,LOC107666439,LOC106585917
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 2205433 ~ 2212809 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015604877.2
GAAACAGTATTCGGTGGGATATTGGCACTAGCTGAGTGGAGCTCGAGCTGTTACGGGTTTTTAGTTTATAGACCcttatataaacattaatacccttattaacagtaataataatcattaataagcGCTTATAGATCAGAGTAGAGTAAATTACCGGGTTAATAACGGTGTTATTGAGCTCTGCGGGGAGGAAACCGCGGACCGGGGCTCTGTTCAACCATGAACCCAGAATAtgattacctgtttaaactgctgctgattggaGACTCTGGGGTCGGGAAGTCCTGTCTTCTTCTGCGTTTTGCGGATGACACATACACTGAAAGCTACATCAGCACGATCGGCGTCGACTTCAAAATCAGAACGATAGAGCTGGACGGAAAGACCATCAAACTACAGATCtGGGACACTGCGGGTCAGGAGAGATTTCGCACCATCACCTCCAGCTACTACAGAGGAGCCCACGGCATCATCGTGGTCTATGATGTCACAGACCAGGAGTCCTTTAACAACGTGAAGCAGTGGCTGCAGGAGATCGATCGCTACGCCAGCGAGAGCGTCAACAAGCTCATGGTGGGGAACAAGTGTGACCTGACCACCAAGAAAGTGGTGGACTACACAACAGCAAAGGAGTTTGCAGACTCTCTGGGAATACCGTTCCTGGAGGCCAGCGCGAAGAACGCCACGAACGTGGAGCAGGCCTTCATGACCATGGCGGCGGAGATCAAGAAGAGGATGGGGTCGGGGACCAGCGGTGGGGGAGCTGACAAATCTAACGTCAAGATCCAGAGCACACCCGTCAAAACCTCCACCGGGGGGTGCTGCTgagctgagagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaaataccTGATGCAGTGTGAGGTTTGTTAAAGGATGCTACAGTAACTTTGCCTGATGTTTGTATCATGCATGCAGTGAAGCTGCACGGGCAGATTTACACATGTTTCTGACGGTTTTGAGCTTCAGAGCCTCAGATCAGTAGGTGAACAGATTCATCACACACCTTTACCAGGTCAGTACGTTTCTTATTAATGTGAGGGACTGCTGGAAACATCTCTGGAGTGACTTACTGACTTTAATATAAATAGAGAATAAGCTGACTGAGCGCTGATGAAGggactgaagctgctgcaggATCTTGTTCAGAaggttttggttttgtttgtaactgtaactgttagTTTGTTGTTAATTTGAtggtatattttgtttttaggtTATTTGGGGCGTGTTCTCAGATATATTGTACAGAAAACCCTAACCCCAGACTTCAGATGTTCGTGTTGGTTCACCATTTCATTTAAACCCAAGACAGGCTTCAGGTAGAGCTTCACAATGAGTTTATAGACCATGGAAAACTGTGCAGAGGTGGGTGTCTAACAGAGGGGCATTTTTAGGGTAATCTCCATGATGTTTAAGTATAATATGTATGTAACTTGTAATTTTACCCAATTCCTGTTCGTATTacctccctctatcactagcaGAGCTCCAGACACTCActgtacatgtgaagtcaggctCTGCCTCTTTTCCGTTTCCTTTCAGCTACCACTAATCACCAATGCAGCGTCACTTAGAGGAAAGCGCAGGATCCCCTGCTCAGATAAATCagctaacagctgtgctgagcaGCATCACGTTAAGATTGATGAGAAGAGAGAGCACcccctactgtacccacccagaaataAACAGCATGGTCaagtgtgctctctctgactctggctgctgatgccaaagcATGGTCAGCCCAGTTTCATCAGTTTCAGACttaatgaaaaagaaaacatgtatatcagctctggaaaaaattaagagatcacttcagtttctgaatcagttttttcgg

Function

symbol description
rab1a Enables GTPase activity. Involved in several processes, including COPII-coated vesicle cargo loading; growth hormone secretion; and positive regulation of macromolecule metabolic process. Located in Golgi apparatus and extracellular exosome.

NR:

description
PREDICTED: ras-related protein ORAB-1-like

GO: NA

KEGG:

id description
K07874 RAB1A; Ras-related protein Rab-1A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015604877.2 True 1879 mRNA 0.46 6 2205433 2212809

Neighbor

gene id symbol gene type direction distance location
cenpm cenpm coding upstream 67227 2131980 ~ 2138206 (+)
LOC103037292 zgc:158803,LOC108411937,LOC108258445,LOC107700834,LOC107598467,LOC107709610,LOC107747154 coding upstream 74786 2117126 ~ 2130647 (+)
mri1 mri1,LOC107594353,LOC107703717,LOC107700835 coding upstream 89481 2099791 ~ 2115952 (+)
cc2d1a NA coding upstream 112709 2069558 ~ 2092724 (+)
LOC103030775 NA coding upstream 146890 2053000 ~ 2058543 (+)
LOC103028349 NA coding downstream 10064 2222873 ~ 2230023 (+)
vps54 vps54,LOC107709616 coding downstream 95490 2308299 ~ 2328262 (+)
khsrp khsrp coding downstream 157147 2369956 ~ 2389979 (+)
LOC103025604 LOC108436360,LOC107598482,LOC107700849,LOC107747162 coding downstream 188745 2401554 ~ 2415821 (+)
LOC103022670 pgam1,LOC108436383,LOC108258456,LOC107729838,LOC107700858,LOC107598490 coding downstream 291676 2504485 ~ 2506380 (+)
G100149 NA non-coding upstream 56433 2148473 ~ 2149000 (+)
LOC111193503 NA non-coding upstream 64342 2139826 ~ 2141091 (+)
LOC103038253 NA non-coding upstream 181426 2019883 ~ 2024007 (+)
G100110 NA non-coding upstream 187812 2016723 ~ 2017621 (+)
G100115 NA non-coding upstream 210406 1994437 ~ 1995027 (+)
G100178 NA non-coding downstream 22081 2234890 ~ 2235162 (+)
G100175 NA non-coding downstream 46420 2259229 ~ 2260386 (+)
G100174 NA non-coding downstream 47850 2260659 ~ 2261235 (+)
G100177 NA non-coding downstream 49049 2261858 ~ 2263486 (+)
G100194 NA non-coding downstream 96907 2309716 ~ 2310103 (+)
LOC103031088 NA other upstream 153575 2040094 ~ 2051858 (+)
LOC103031617 NA other upstream 166691 2032895 ~ 2038742 (+)
LOC103038569 NA other upstream 189170 2012029 ~ 2016263 (+)
LOC103047668 NA other upstream 316196 1885228 ~ 1889237 (+)
LOC111193593 NA other upstream 352414 1845491 ~ 1853019 (+)
c12h19orf53 LOC103027500 other downstream 120798 2333607 ~ 2336332 (+)
LOC103026535 slc25a23a,LOC103026535,LOC107594260,LOC107703801,LOC107747161,LOC108258471 other downstream 130810 2343619 ~ 2368564 (+)
avpi1 NA other downstream 238592 2451401 ~ 2463385 (+)
LOC111193601 NA other downstream 280952 2493761 ~ 2500431 (+)
LOC111193505 NA other downstream 397708 2610517 ~ 2625505 (+)

Expression


Co-expression Network