LOC103045165 (LOC107751098,LOC108429813,LOC108258592,LOC107739159,LOC107739162)


Basic Information

Item Value
gene id LOC103045165
gene name LOC107751098,LOC108429813,LOC108258592,LOC107739159,LOC107739162
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 20238645 ~ 20242346 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015607259.2
GAATCAGGCCTTCACAGTATAAGAGCTGCCTGCTCAAACAAACTCTTCAGTCAAGCCTATCAAGCTGATATTTTACTATTGCTGGCCTGCACATCATCTAACAGAGACCTGCTATCATGTCTGGCCGTGGAAAGAAGGTGGGTGCTGCTGCTTCCAAGCGCAAGGCCACAGTGTCCCGGTCGACCAGGGCAGGCCTCCAGTTTCCCGTGGGCCGTGTCGCTCGCCTGCTGAAAAAGGGGAACTACGCACCGAGGGTGGGAACTGGGGCTGCAGTCTACCTCGCTTCAGTGCTGGAGTACCTGAGCGCTGAGGTGCTGGAGTTGGCAGGCAATGCCAGCAGAGACAACAAGAAGCACCGCATCGCTCCACGACACATACAGCTGGCTGTGAGGAACGACGAGGAGCTGAACGCGCTGCTGGGTAGCGTCACCATCTCTGAGGGAGGTGTGCTGCCCAACATCCAGGCCCAGCTGCTGCCCAAGAAAACAAAGGCTTCCAGAGATGCTGCTGACAGCAGTAAAGAGGTCCAGTCTCAGGAGTTTTAGACCttgaatatatatgtatctttattgccacttgttttttaaattatttttttattgaataaagGTTTTTTAAAAAGG

Function

NR:

description
PREDICTED: histone H2A, sperm-like

GO:

id name namespace
GO:0006334 nucleosome assembly biological_process
GO:0000786 nucleosome cellular_component
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0046982 protein heterodimerization activity molecular_function

KEGG:

id description
K11251 H2A; histone H2A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015607259.2 True 623 mRNA 0.52 2 20238645 20242346

Neighbor

gene id symbol gene type direction distance location
LOC103043852 pou2f1 coding upstream 41412 20169926 ~ 20197233 (+)
dusp27 dusp27,LOC102309085 coding upstream 73454 20153405 ~ 20165191 (+)
LOC103043041 LOC108429787 coding upstream 93031 20081882 ~ 20145614 (+)
prss23 prss23,LOC107570079,LOC106575973 coding upstream 354154 19878775 ~ 19884491 (+)
ccdc81 NA coding upstream 416625 19799593 ~ 19822020 (+)
LOC103045776 NA coding downstream 15844 20258190 ~ 20270628 (+)
LOC103046085 NA coding downstream 29261 20271607 ~ 20280169 (+)
LOC103046381 LOC108429788 coding downstream 39302 20281648 ~ 20287435 (+)
LOC103027637 LOC108429819 coding downstream 48302 20290648 ~ 20312757 (+)
LOC103046697 NA coding downstream 72568 20314914 ~ 20323422 (+)
G105017 NA non-coding upstream 397 20237850 ~ 20238248 (+)
G105008 NA non-coding upstream 32895 20203194 ~ 20205750 (+)
G105007 NA non-coding upstream 35706 20202635 ~ 20202939 (+)
G104950 NA non-coding upstream 229874 19996579 ~ 20008771 (+)
G104944 NA non-coding upstream 291204 19946843 ~ 19947441 (+)
G105018 NA non-coding downstream 559 20242905 ~ 20243355 (+)
G105032 NA non-coding downstream 38368 20280714 ~ 20281486 (+)
G105041 NA non-coding downstream 105973 20348319 ~ 20424575 (+)
G105044 NA non-coding downstream 151962 20394308 ~ 20397272 (+)
G105074 gas6,LOC107571980,LOC107573434 non-coding downstream 376444 20618790 ~ 20620441 (+)
nfkbiz nfkbiz other upstream 493721 19734226 ~ 19744924 (+)
G104656 pcdh8 other upstream 1315442 18919060 ~ 18923203 (+)
LOC111193547 NA other upstream 2819507 17406595 ~ 17419138 (+)
LOC103031769 prps2 other upstream 3099672 17119847 ~ 17138973 (+)
LOC103035065 nhlh2,LOC103035065,LOC108434665,LOC108258389,LOC107739819,LOC105019883 other upstream 3344053 16888386 ~ 16894592 (+)
G105276 NA other downstream 746927 20989273 ~ 21055483 (+)
G105312 abcb6,abcb6a,LOC107556273,LOC107750068 other downstream 776692 21019038 ~ 21028990 (+)
G105357 NA other downstream 1084846 21327192 ~ 21369204 (+)
LOC103046939 LOC107701771,LOC107725347,LOC107565259 other downstream 2012739 22255085 ~ 22283453 (+)
LOC103045705 LOC107725350,LOC107692700,LOC108439093,LOC107565240,LOC108441473 other downstream 2282911 22525257 ~ 22588961 (+)

Expression


Co-expression Network