LOC103023109


Basic Information

Item Value
gene id LOC103023109
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 25382872 ~ 25386300 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015607967.2
ataatttataaacttgtttattgGCTGGGTCTTGGTCTATTCTGTtgaacaacagctctcaaatagtgttttataaaacaaaacatttaaaaataaagaaaatacattatgtccattgtaatggatgcagggtctgaaaaggTTAACAGAGAACTTATACAGAGAAAACCCATTTGACAAAATCGTGGTTTGtcagacagtagagggcgctccCCCGCTTCATACAGAGCAACAGAGCAAATTCAGAGTATAGACATTTGactatttttatattgaaaaaTGTGTTATAACCCTGTAGGTAAGATTTTGAGGaggatctttttttttgctgaaccaAACTGATTGGTCACCACCAATGGAACCAGTCTTAAAAATACACAGGAACAGGCAGTGGGCAGTCTCTCCATAAAGCATCTCTGTTAGAACTTCCGGTCTTCcacagctctgtgtgtgtttgcggtttgagtgtgtgtagagtgttgaGTGCGGCTCTGTTGCAGAATAAGGATGAGCTGATCTACAGAAGAAATGAAGATGATCCTAGTCTTCTTCCTCTAGTGTTGACTTTCCTATCTGGCTGAAGTTTATCAACAAACAACCATCAAGATATTTCACAAAGATCAGTGTTAACCTGccaaaaaaatgttaagcatAACACATACAGAAGAATCTCCAGACCTGATCTCAATGAATCCAAGTCCAGGCGAAGTGAAAATTcaccactgttcagactgtggaaggaGTTTTTCTCTACAGAGTGATTTCAAAAcacaccagctcattcacacaggagagaaaccgtatacGTGTTCAGACTGCGGGGCAAATTTtactacacagatttatctcaacatacaccagcgcattcacgcTCAAGATAAACCATATAAGTGTTCAGAcagtgggaagagttttactgaacagagtaatgTTGTAGGACATCAGcatattcacactggagagaaagcCTATCAGTGCTCCTCACAGAGATTTACCTCACAGAGTCATCTTCAAAAGCATTTGCGCATTCACACAGAAGAGAAAACACatcagtgctcagactgtgagaaacattttactacacagagtgagctcaaaagacaccagcgcgttcacacaggagagaaaccgtatcactgctcagactgtgggaaaagttttaatctacagaataatctcaaaatacacaagcgcattcacactggagagaaaccgtatcactgctcagaatgTGGAAAGGATTTTAATACATTGAGTAATTTCAAAGTACACAAGCTCATTCACACTGGACAGAAACCATTTCACTGTTCAGAATGTGGGAAGGATTTTAATCAACTGGCTAAACTGAAACTACATCAGCTCACTCACACAAGAAAGAAACAATACatctgctcagagtgtggaaaggGTTATGCCACACAGAGTGGTCTTAATAATCATttgcgcattcacacaggagagaaacggcatcactgctcagagtgtgggaagagttttagtcgACTGAGTACATTCAAGCTACAcctgcgcattcacacaggagagaaaccgtatcagtgcttgGAGTGTGGGAGGAGATTTAGTCGACTAGATTATCTCCagcaacaccagcgcattcacacaggagagaaaccgtatcactgctcagagtgtgggaagaatTTTAATCATCGGACTAGACTCAAagtacaccagcgcattcacacaggggataaaccgtttcactgctctgagtgtgggaagagttttaatcatcggattaaactcaaaatacaccagcgcgttcacacaggagagaaaccgtatacctgctcagagtgtgggaagagttttgctCAGCTGAGTTCTCTCCAGCTACACCAGCGCACTCACACCGgggagaaaccgtattactgctcagagtgtggaaagagttttagtcGGCCAGAGAATCTCAAAGTACACCaccgcattcacactggagacaaaccgtatcactgcttagcctgtgggaagagttttactcaacagagtgctctcaaaatacaccagcgcacacacaccggagagaaaccgcatCACTGCTCAGTCTGTGGAAAGAATTTTGCGCTACTGGGTCTTCTAAAgctacatcagcgcattcacacaggagagaaaccgcatcattgctcagagtgtgggaagagttttagtcgactaaataaACTTCGAgaacaccagcgcgttcacacaaGAAAGAACCACATTCCTGCTCAAACTGTGGAAAGAACTTCAACTATTCACTATCATTCAAGAAACACAAGTGTACTGCCACAGCAGTAGAGAGTAACACTCCTTCAACCAGTTCAGGCCCCAACGAAGATGTTACAAAAAGCAAGGAACTTGTTtatggagaagaagaagaaaaag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015607967.2 True 2388 mRNA 0.42 2 25382872 25386300

Neighbor

gene id symbol gene type direction distance location
LOC103022503 NA coding upstream 8040 25372806 ~ 25374832 (+)
slitrk6 slitrk6,LOC107674010,LOC107730399,LOC107558904,LOC107737039,LOC107574216,LOC107698122 coding upstream 280299 25076936 ~ 25102573 (+)
gpc6 LOC108414264,LOC105911916,LOC107730398,LOC101477426,LOC100710496,LOC107744956 coding upstream 1267411 23970691 ~ 24115461 (+)
LOC103035907 NA coding upstream 1743984 23632379 ~ 23638888 (+)
chtf18 chtf18,LOC107725360 coding upstream 1830174 23524716 ~ 23552698 (+)
LOC111193564 NA coding downstream 33240 25419540 ~ 25422258 (+)
LOC103025458 NA coding downstream 37412 25423712 ~ 25449279 (+)
LOC111193460 NA coding downstream 98543 25484843 ~ 25519366 (+)
ube2f ube2f,LOC107725407,LOC107674019,LOC107556276,LOC107707607,LOC107566887 coding downstream 353927 25740227 ~ 25759643 (+)
LOC103038099 erbb4,LOC108441681,LOC108440448,LOC101079286 coding downstream 377547 25763847 ~ 26023673 (+)
G106250 NA non-coding upstream 169403 25213203 ~ 25213469 (+)
G106248 NA non-coding upstream 170796 25211579 ~ 25212076 (+)
G106220 NA non-coding upstream 473843 24908744 ~ 24909029 (+)
G106217 NA non-coding upstream 474941 24907148 ~ 24907931 (+)
G106205 NA non-coding upstream 584671 24797868 ~ 24798201 (+)
LOC103043670 NA non-coding downstream 14617 25400917 ~ 25401805 (+)
G106274 NA non-coding downstream 65837 25452137 ~ 25542268 (+)
G106273 NA non-coding downstream 69820 25456120 ~ 25548983 (+)
G106277 NA non-coding downstream 118506 25504806 ~ 25530624 (+)
G106281 NA non-coding downstream 137277 25523577 ~ 25526560 (+)
LOC111193563 NA other upstream 13433 25361744 ~ 25369439 (+)
G106146 NA other upstream 969774 24411208 ~ 24413098 (+)
G106036 NA other upstream 1393280 23987207 ~ 23989592 (+)
G106017 si:ch73-12o23.1,LOC108439175,LOC108258846,LOC107722961,LOC107590719 other upstream 1459101 23915635 ~ 23923771 (+)
LOC103038624 zgc:77849,LOC103038624,LOC108439082,LOC107722949,LOC107692663,LOC107590708,LOC107564565 other upstream 2562776 22810079 ~ 22820096 (+)
LOC111193565 NA other downstream 72515 25458815 ~ 25570821 (+)
LOC103037236 NA other downstream 768117 26154417 ~ 26171801 (+)
G106661 lancl1 other downstream 2628216 28014516 ~ 28022047 (+)
G106673 NA other downstream 2680052 28066352 ~ 28066983 (+)
LOC103027743 NA other downstream 3316767 28703067 ~ 28724026 (+)

Expression


Co-expression Network