LOC103036216


Basic Information

Item Value
gene id LOC103036216
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 16790748 ~ 16798890 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015608321.2
TTTACAACCCTGGTGCTCCGAATGTAAAGTCTTCATCTATTGGTTTAACCATATAATACGGTTTAACCGTACTGCCACATAGCATATGGGTGGTTCATGATTCAGGAACTGAAATGTGTGTTCtaatggtgtgtgtttttttttagactgaAGCAGCATCAGACTGAGTACATCAGTGATGAGCAGATCTTCAGTACGGCAGTCCTACTTTAACCCAAAGTGCTGCATGcggtcttttttttaaaagCTCCGCTTTATAAttgctgaagtttcatattttgctggCTGCAGGAATCACAAACCCGGCTGGTTGGATACTCTCAGAAACCAGTGGGAGGGTCCCACTGTAACAGAATTTAAAGAAGTCGTTAGCTTCTAGTGTGAACAGAAACATATGTGACCTGAGGAAGTCAGGGGAAAACACAAGAATATCATCAAGATCATATGAAGAGCCGGGCCAAGACAAGACATCCTATTGAAGGCTTTACCTGCAACCTAACAATTATGTAAAGAACCAATAtttctttggaaaaaaaacttggacAATTCTCCTTACAACCCAATATGTCGGTTTTTATACTGGTGTCATTTTACCTCCACGCCACTGTGGTGCAAGGCTTCTTTGTGAAaaactgtaacataaaagcaaTTCCAACACACTCAACAAACTTTGTGGCTCTATGCAATAAACAGCGCCTTAGCACCGTACCAGAGAACTTACCCCACCACATAAAAGGACTGGATATATGTCAAAATAACATATCAAAGATAAAGAGCAATGATTTGGTATATTTGTCACATCTTAAATATCTGAATGTATCACACAATGTGCTTCAGGAGGTGGAGGATGGAGCGTTCAGGAGTTTGGAGGAATTGCAAGGTCTGAATCTTGCCTTCAACAGACTTACCACTATCCAAGGGTCATTCTTTCAAAATCTGCATAACCTCACTGTTCTTCGCCTTGACAAAAACTCCCTCAGAAGCATCAGTGCCTCCGCCTTTGTTCCTCTTAAGAGTTTGGTGATGGTGAATTTGTCTGGAAATCATCTACAGAACATAGAAAGACTGCAGCCACTTTTCATGTTACCCAAACTTATGCGCGTGCACATAGGAAGCAATGGAATAACCTCTTTTCAATCACTGAAAATATCAAACACATCCTTAAATCTGAAAGCCTTAGACTTGTCCTGGAATCCTTTGCAAGTCTTCAGCCTCACACAGGATGTCTTCCCTCAGCTTGAGATGATAGACCTGGCTTTTATTAATGAAAGCATGAGATGGGATGTACAGGACAAAAATTATCTGCAAAATGTTTTCAAACTGAACCTAAGTGGGATACACATGGCAACAGAAGATATCACAGCAGTGCTACAAATGCTTAACTCTTCACTGACTTACCTAAAAATTGAATACATGGGAAAAATTAAAGCACAGTCACTCATTAAGGCTGCTTGTCGGATTGACTCTTTAACAGTCTTTCGCTTGCAAGGAAACAACCTAAACTCTATATCAGATCAAGAGTTTAGATTATGCAAACAGCTCACTCTACTGGACTTGCCTAGAAACAATCTCATAAGTATATCAAGTTTAGCATTTTCATCACTTAAAAATCTCAGTAAACTAATACTGTGTCATAACAAGCTAAAAAGTGTTCCTATTGCCATGAGAAATATATCCACACTGGAGACCATAGACCTGAGCTACAATTCCATAAAAGAGTTAAAATGTGTAGATTTTGCAAATCTTAAAAAATTATCAAAACTTCACATTTACAGAAATCCTTTGCATACTGTGGAACTGTGTGCTTTTCAAAATCTGAACAACTTACAAAGCTTGATAATGAGTACAGAAATATTCACCCTAAAAGGTTATTTTACGTCAGGAGTCCAGAAATTAGAATTGCTTGATTTGAGTCAAAATAAGCTAAATTCCATTAATAAAGGAGATTTTAGATGTTTGGGCTATCtgagatatttatatttacaagaTAACCAGATTACATATATCGAACCAGGCGCATTTGAAGGACTAACAAACTTAACTGTACTGAGCCTGCAATCAAACAAGATCACACAGAGCTCAATAAgactttctgttttttctggACTACCAAACTTATTGTATCTTTGGTTGAACAACAACTACATTTCTTATTCCACCCAAACTAGCCTTAGAGAACCACCTTTTGCTTCTCTTCCACACTTGGAGGTGCTAGGGATTTACAGTCAACACCATAAAGGAATGGAAAACATTCCTTTAAACTTTTTGCAGGGATTGACCTCTTTAAATTTGCTTTGGGCTGGAAGTCTTGGCATAACATCCCTACATCCTCACACATTTAAATACACTCCTGGTCTAAGGTTCTTAGATCTGAGCAAAAATGAGTTTTCACTACTCTCTCCAGAAATATTTTGGCCAATCAAACAACTCTACAGGCTTGTCATGGTCCAAACCGGCTTGCAATCCATTGACTTCCTTGTGCCAGCCAATCTTTCTGAAATACGTCTCTTGTTTGTAAGACACAATGCCATATCGGTTGTCAACAAGACTGTAATCGACTTCCTTTCAAAACTGATGTACCTTGACCTTCaagaaaatgcattttcatGTGACTGTACCAATGCATGGTTCATTAACTGGACAATCAATGGCAAAGAAACACAAGTTCTAAATGCAGACAAGTTCCAGTGCAACTACCCTGTAGACCTCAGAGGGAAAAAACTCATGAATCTCGATGTGAACTCATGCAGTGTTGAtgttggttttatttgttttatctcCACTAGTGCTTTAGTTCTTTTGACACTAGTCACTACTTTCTTTTACAACTTCTTGAAGTGGCAGGTCATTTATACATACTACCTTTTCCTGTCCTTCCTCTATGACAGCAAGCATCAAAGAAAGCAAGAGACAAATGGCTTCCAGTATGATGCTTTTGTTTCCTACAACACCCATGATGAACCCTGGGTGATGGAAGAGCTGTTATCAAAGCTGGAGGGAGAGCAGGGCTGGAGGTTGTGTTTGCACCACAGAGACTTCCAGCCAGGTAAACCAATCGTGGATAACATTGTGGATGGAATCTACAGCAGCCGTAAGACCATCTGTGTGATCAGTCGCCACTACCTGGAGAGTGAGTGGTGTTCCAGAGAAATCCAGGTGGCCAGTTTTCGACTCTTTGACGAGAAGAAGGACGTTCTTATTTTGGTGTTCCTGGAAGACATTCCAAACTCTGAGTTGTCTCCATATTACAGAATGAGAAGACTAATAAAGAAGCGCACCTACCTTAAGTGGCCCAAACTAGGAAAGGATACTCAGTACTTCTGGCAGAAGCTGAGAGCCGCCTTGGAAACCAGGGGAAGTTCAGATGAGAATAATAGTGCATTGCAGTCAGCCCAGTAGTTATAAACCGTAGGGAGTAAAAGTTTTCAATTCAAATGGAACTTCAAACTGCGTAGGAAATAGTAAAGTAAAGATGCTTTCATGTTGAATGCGGTAGCTGCACCACTGTGCACTGAACCCCATTGGGTCCAATTGTTTCTTCGCCACCAGGGCAGTGTGGATTGCGGTTTGTTTCCATGCCCATGCCATGCCACTGCCATGCTACCGCTTGCTGGTTCAACTATGACTGCATGCCAAGCCGTAGTGCAGCAGAAAATGCATGACTTGAACTCATGCGACCAAGGAAAAATTGTAGTCCAAACAAGAAAAATCATGGGCGAGAGATACTAGGAGGAAGACAAAGATGCTGTTGCTCGcaccaaacaccaaaacacTGGTCACAGACGTGACATGTTTTCAAAAAACCTCACAATTATTAGCAAGCAATCCTCTGCGTCAGCAATAGCATCGAACAGAGCAGAACGAAAAGCGGAACATCCCTGGCAATGTGAAAAAATACCTTAATGGTTTATCAATGTATAGGTACATGTACAAagtttactgtacattttccATCATGTGTCTTGGGGTTAAACCAACTGGCTCTTATCACAAACAAAATACAACGCATTTAAAACATGTGGCAAatctatttaattatttataaaatgacATTTATTTCCCTATTACATTATTGGTTACATTTACACAGCAGATTAACGTAGCCCAAAAAAGTTCCAGACCAATATCTGAACCAATGTTCATGTATTGAATGAGTATAACAGACTGCAGTCATAATACTTTTATTACTGCATATAAATATGTGCTAATTTAATAGATACAGGAGTCACAAGCATAAGCATTTGCTCCTGTACCATTATGTGCAGCGCCTGCATGCACCTGCAAATCGTAATTGAAAATGTCAGATTCAATTTGTTCCTTGTCATTTACACAGCAATGCAGATAACATGCATGTGTcgcatattttaaaaaataattcacatATTCATacagagataaataaaaacaagattAGACACAGATatgttatttctttttataattattcAATTGGGTGTCTTAATTTTGTTCACATGATTGGATGCG
>XM_022674784.1
TTTACAACCCTGGTGCTCCGAATGTAAAGTCTTCATCTATTGGTTTAACCATATAATACGGTTTAACCGTACTGCCACATAGCATATGGGTGGTTCATGATTCAGGAACTGAAATGTGTGTTCtaatggtgtgtgtttttttttagactgaAGCAGCATCAGACTGAGTACATCAGTGATGAGCAGATCTTCAGTACGGCAGTCCTACTTTAACCCAAAGTGCTGCATGcggtcttttttttaaaagGAATCACAAACCCGGCTGGTTGGATACTCTCAGAAACCAGTGGGAGGGTCCCACTGTAACAGAATTTAAAGAAGTCGTTAGCTTCTAGTGTGAACAGAAACATATGTGACCTGAGGAAGTCAGGGGAAAACACAAGAATATCATCAAGATCATATGAAGAGCCGGGCCAAGACAAGACATCCTATTGAAGGCTTTACCTGCAACCTAACAATTATGTAAAGAACCAATAtttctttggaaaaaaaacttggacAATTCTCCTTACAACCCAATATGTCGGTTTTTATACTGGTGTCATTTTACCTCCACGCCACTGTGGTGCAAGGCTTCTTTGTGAAaaactgtaacataaaagcaaTTCCAACACACTCAACAAACTTTGTGGCTCTATGCAATAAACAGCGCCTTAGCACCGTACCAGAGAACTTACCCCACCACATAAAAGGACTGGATATATGTCAAAATAACATATCAAAGATAAAGAGCAATGATTTGGTATATTTGTCACATCTTAAATATCTGAATGTATCACACAATGTGCTTCAGGAGGTGGAGGATGGAGCGTTCAGGAGTTTGGAGGAATTGCAAGGTCTGAATCTTGCCTTCAACAGACTTACCACTATCCAAGGGTCATTCTTTCAAAATCTGCATAACCTCACTGTTCTTCGCCTTGACAAAAACTCCCTCAGAAGCATCAGTGCCTCCGCCTTTGTTCCTCTTAAGAGTTTGGTGATGGTGAATTTGTCTGGAAATCATCTACAGAACATAGAAAGACTGCAGCCACTTTTCATGTTACCCAAACTTATGCGCGTGCACATAGGAAGCAATGGAATAACCTCTTTTCAATCACTGAAAATATCAAACACATCCTTAAATCTGAAAGCCTTAGACTTGTCCTGGAATCCTTTGCAAGTCTTCAGCCTCACACAGGATGTCTTCCCTCAGCTTGAGATGATAGACCTGGCTTTTATTAATGAAAGCATGAGATGGGATGTACAGGACAAAAATTATCTGCAAAATGTTTTCAAACTGAACCTAAGTGGGATACACATGGCAACAGAAGATATCACAGCAGTGCTACAAATGCTTAACTCTTCACTGACTTACCTAAAAATTGAATACATGGGAAAAATTAAAGCACAGTCACTCATTAAGGCTGCTTGTCGGATTGACTCTTTAACAGTCTTTCGCTTGCAAGGAAACAACCTAAACTCTATATCAGATCAAGAGTTTAGATTATGCAAACAGCTCACTCTACTGGACTTGCCTAGAAACAATCTCATAAGTATATCAAGTTTAGCATTTTCATCACTTAAAAATCTCAGTAAACTAATACTGTGTCATAACAAGCTAAAAAGTGTTCCTATTGCCATGAGAAATATATCCACACTGGAGACCATAGACCTGAGCTACAATTCCATAAAAGAGTTAAAATGTGTAGATTTTGCAAATCTTAAAAAATTATCAAAACTTCACATTTACAGAAATCCTTTGCATACTGTGGAACTGTGTGCTTTTCAAAATCTGAACAACTTACAAAGCTTGATAATGAGTACAGAAATATTCACCCTAAAAGGTTATTTTACGTCAGGAGTCCAGAAATTAGAATTGCTTGATTTGAGTCAAAATAAGCTAAATTCCATTAATAAAGGAGATTTTAGATGTTTGGGCTATCtgagatatttatatttacaagaTAACCAGATTACATATATCGAACCAGGCGCATTTGAAGGACTAACAAACTTAACTGTACTGAGCCTGCAATCAAACAAGATCACACAGAGCTCAATAAgactttctgttttttctggACTACCAAACTTATTGTATCTTTGGTTGAACAACAACTACATTTCTTATTCCACCCAAACTAGCCTTAGAGAACCACCTTTTGCTTCTCTTCCACACTTGGAGGTGCTAGGGATTTACAGTCAACACCATAAAGGAATGGAAAACATTCCTTTAAACTTTTTGCAGGGATTGACCTCTTTAAATTTGCTTTGGGCTGGAAGTCTTGGCATAACATCCCTACATCCTCACACATTTAAATACACTCCTGGTCTAAGGTTCTTAGATCTGAGCAAAAATGAGTTTTCACTACTCTCTCCAGAAATATTTTGGCCAATCAAACAACTCTACAGGCTTGTCATGGTCCAAACCGGCTTGCAATCCATTGACTTCCTTGTGCCAGCCAATCTTTCTGAAATACGTCTCTTGTTTGTAAGACACAATGCCATATCGGTTGTCAACAAGACTGTAATCGACTTCCTTTCAAAACTGATGTACCTTGACCTTCaagaaaatgcattttcatGTGACTGTACCAATGCATGGTTCATTAACTGGACAATCAATGGCAAAGAAACACAAGTTCTAAATGCAGACAAGTTCCAGTGCAACTACCCTGTAGACCTCAGAGGGAAAAAACTCATGAATCTCGATGTGAACTCATGCAGTGTTGAtgttggttttatttgttttatctcCACTAGTGCTTTAGTTCTTTTGACACTAGTCACTACTTTCTTTTACAACTTCTTGAAGTGGCAGGTCATTTATACATACTACCTTTTCCTGTCCTTCCTCTATGACAGCAAGCATCAAAGAAAGCAAGAGACAAATGGCTTCCAGTATGATGCTTTTGTTTCCTACAACACCCATGATGAACCCTGGGTGATGGAAGAGCTGTTATCAAAGCTGGAGGGAGAGCAGGGCTGGAGGTTGTGTTTGCACCACAGAGACTTCCAGCCAGGTAAACCAATCGTGGATAACATTGTGGATGGAATCTACAGCAGCCGTAAGACCATCTGTGTGATCAGTCGCCACTACCTGGAGAGTGAGTGGTGTTCCAGAGAAATCCAGGTGGCCAGTTTTCGACTCTTTGACGAGAAGAAGGACGTTCTTATTTTGGTGTTCCTGGAAGACATTCCAAACTCTGAGTTGTCTCCATATTACAGAATGAGAAGACTAATAAAGAAGCGCACCTACCTTAAGTGGCCCAAACTAGGAAAGGATACTCAGTACTTCTGGCAGAAGCTGAGAGCCGCCTTGGAAACCAGGGGAAGTTCAGATGAGAATAATAGTGCATTGCAGTCAGCCCAGTAGTTATAAACCGTAGGGAGTAAAAGTTTTCAATTCAAATGGAACTTCAAACTGCGTAGGAAATAGTAAAGTAAAGATGCTTTCATGTTGAATGCGGTAGCTGCACCACTGTGCACTGAACCCCATTGGGTCCAATTGTTTCTTCGCCACCAGGGCAGTGTGGATTGCGGTTTGTTTCCATGCCCATGCCATGCCACTGCCATGCTACCGCTTGCTGGTTCAACTATGACTGCATGCCAAGCCGTAGTGCAGCAGAAAATGCATGACTTGAACTCATGCGACCAAGGAAAAATTGTAGTCCAAACAAGAAAAATCATGGGCGAGAGATACTAGGAGGAAGACAAAGATGCTGTTGCTCGcaccaaacaccaaaacacTGGTCACAGACGTGACATGTTTTCAAAAAACCTCACAATTATTAGCAAGCAATCCTCTGCGTCAGCAATAGCATCGAACAGAGCAGAACGAAAAGCGGAACATCCCTGGCAATGTGAAAAAATACCTTAATGGTTTATCAATGTATAGGTACATGTACAAagtttactgtacattttccATCATGTGTCTTGGGGTTAAACCAACTGGCTCTTATCACAAACAAAATACAACGCATTTAAAACATGTGGCAAatctatttaattatttataaaatgacATTTATTTCCCTATTACATTATTGGTTACATTTACACAGCAGATTAACGTAGCCCAAAAAAGTTCCAGACCAATATCTGAACCAATGTTCATGTATTGAATGAGTATAACAGACTGCAGTCATAATACTTTTATTACTGCATATAAATATGTGCTAATTTAATAGATACAGGAGTCACAAGCATAAGCATTTGCTCCTGTACCATTATGTGCAGCGCCTGCATGCACCTGCAAATCGTAATTGAAAATGTCAGATTCAATTTGTTCCTTGTCATTTACACAGCAATGCAGATAACATGCATGTGTcgcatattttaaaaaataattcacatATTCATacagagataaataaaaacaagattAGACACAGATatgttatttctttttataattattcAATTGGGTGTCTTAATTTTGTTCACATGATTGGATGCG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015608321.2 True 4485 mRNA 0.39 4 16790748 16798890
XM_022674784.1 False 4441 mRNA 0.39 4 16790748 16798890

Neighbor

gene id symbol gene type direction distance location
LOC111188171 zc3h12c coding upstream 128403 16628689 ~ 16662345 (+)
LOC103036820 NA coding upstream 165164 16611601 ~ 16625584 (+)
LOC103037127 NA coding upstream 189713 16576843 ~ 16601035 (+)
LOC103038100 NA coding upstream 342259 16442958 ~ 16448489 (+)
pdcd11 pdcd11,LOC104950700 coding upstream 372336 16388056 ~ 16418412 (+)
LOC103035380 NA coding downstream 5018 16803908 ~ 16816495 (+)
vangl1 vangl1,LOC107552384,LOC107748077,LOC107588836 coding downstream 110758 16909648 ~ 17020202 (+)
poglut1 poglut1 coding downstream 250539 17049429 ~ 17060160 (+)
timmdc1 timmdc1 coding downstream 266512 17065402 ~ 17076913 (+)
LOC103032412 gk,LOC107742635,LOC107700103,LOC107667651 coding downstream 282311 17081201 ~ 17109560 (+)
G104082 LOC107662997,LOC107757412,LOC108434698,LOC107707084 non-coding upstream 103375 16682740 ~ 16687373 (+)
G104001 NA non-coding upstream 244738 16544256 ~ 16546010 (+)
LOC111193544 NA non-coding upstream 353116 16433809 ~ 16437632 (+)
G103972 NA non-coding upstream 531750 16258785 ~ 16258998 (+)
G103945 NA non-coding upstream 704904 16085643 ~ 16085844 (+)
G104144 NA non-coding downstream 62098 16860988 ~ 16861202 (+)
G104151 NA non-coding downstream 128334 16927224 ~ 16934483 (+)
G104162 NA non-coding downstream 247882 17046772 ~ 17047740 (+)
G104177 NA non-coding downstream 383406 17182296 ~ 17182538 (+)
G104183 LOC103030517,LOC108434725,LOC100705727,LOC101474240,LOC102192248,LOC103374257,LOC106510766 non-coding downstream 555539 17354429 ~ 17356491 (+)
LOC103037450 NA other upstream 216315 16555694 ~ 16574433 (+)
col17a1 col17a1,LOC108434660,LOC107684270,LOC107583183 other upstream 282961 16463938 ~ 16507787 (+)
G104000 NA other upstream 332539 16451175 ~ 16458209 (+)
LOC103032764 LOC108443686,LOC108258285,LOC107746061,LOC107684317,LOC107566138,LOC105891017,LOC107690754,LOC107086972 other upstream 1492809 14999455 ~ 15297939 (+)
G103561 NA other upstream 2098549 14691043 ~ 14692199 (+)
LOC103035065 nhlh2,LOC103035065,LOC108434665,LOC108258389,LOC107739819,LOC105019883 other downstream 89496 16888386 ~ 16894592 (+)
LOC103031769 prps2 other downstream 320957 17119847 ~ 17138973 (+)
LOC111193547 NA other downstream 607705 17406595 ~ 17419138 (+)
G104656 pcdh8 other downstream 2120170 18919060 ~ 18923203 (+)
nfkbiz nfkbiz other downstream 2935336 19734226 ~ 19744924 (+)

Expression


Co-expression Network