LOC111193458


Basic Information

Item Value
gene id LOC111193458
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 22509446 ~ 22517576 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022674356.1
ATGCGCTTTAAAGCCagtaaaaaaaggaagaaggagaaagaaaaagacaagtCAGGAAATAAGCCAACCTACATGATCCTTAGAATAGGTGGAAACAAACAAGCAGAGAAGAAAACGGGGTTCTTTAAAGGTCTTTTTGGGAAAAAGAACGCAGGAGATGGGGGTAATTTCAAGTACCGGAGTACAGTAATGGGCAAAATTGCAGGGGCAACAAACTGGCTTACAAAGAAGTTCCTCTCAAccaaaagaaaacagagaaccCTTGGCAGGGGTCAGGCCGGCTGGGGCCAGTCGAACAGCAAGCGATTTCCTGGGGGTAGTCAACAGGCGAGCATGAGAGGAGCTCGTGGGTTTGACAATTATGGGTACGAACAAGATTTTGATGGATATGACTACAATAACCAGGGTAGAGTAGAAAGAGGTGCATTCAACAGACAGTCAATCCATAGACAACCAAACAGATATGAGGCTCAGTTTGCTACTGTGCAGGGGCATGCACAGCACTATGAACAGTATGAAGAAACAGCTGACTATTATGACATACCATCTCAGGATCAAGGCTATTATGATTTAGAAGAAGATGGATACTATCAAACACAAATGGGCATGCAGAACGGGGATATGTATTATGACGATGGTATGGGTTATGATAACCCATATTCTGCACAAAATCAGATGGCCTATTACCCAGAGGAGATGGGATACTATGGGGAACAGCAATCAATGGACCCGTATTATGATAATGGAATGGAATACTATGATGAGAGCCAGTATCTAATGGAGGATGTGTATGACCCTTACGGAAATGAAATGGAGTTCTATGACGATGGTCAGTTTGATTATTATGACGACTCTCAGGGTTTCTACGATGATCCATATGGTGTGGTTGGCCCAGATGATTTATACATGGATCCATACAGGAATTATGAAGATCCATATCTACAGGACTTCCAGGTTAATTACAGTGAATCAGGAGTTCCCCCACATCTTGAGTCTGCCTATAACATGTACCAACCATATGGTTATGGTATGCAAGATATAATGGATAGTGGGGGGGTTGATGCGCTGTATGGTGATGAGTTTGGTGGTGTCCCCATGGAGCCAGTTGTACTTCAAGGGGACATGTTTCGAGTTCCAAGACCTCAAGTGAAGCTTTTTGGTAAAGATAAGATAGATGTGGAGCTGCCACCACCACCCCCACAATATGAGTTTGAAGAGATGTCAGAGATTCAGTATGAAAATGATCCATATATACCTCAAGGTCCTATGGTTGGGGGGTTTCCTCCCACAATGCAACCACAAGACATGCTCTATCCAGGAGAGCCCCAGATCCCAACACCAACTGCCATGTTAATTAAGCAGGCTAACAGTCCTCAGGGAATGATGAGCCCTACCATGGCACGGTCTCCACATGTGTCACCAATGGCTCAAAGTGGTGCTTATCCTCCATCTCCTACACCAAGCAGGAGGTCCATGGGGATGATGGGCTCTACTGCTCAGAGGCCAATGTCCCTTATGTCAGCTCAAGGCCCCATGCCTCCCATGGCAGATCCAGGTCCCATTTCCTCTATGATGGCACCAGGTTCTATGTACCCTATGGCAGCACAAAGGCCTATGTCCCCTATGGCAGCACATAGATCCATGTCCCCTATGGGAGCACAAATGCCCATGTCCCCTATGGCAGCACAAATGCCCATGTCCCCTATGGCAGCACAAATGCCCATGTCCCCTATGGCAGCACAAATGCCAATGTCCCCTATGGCAGCCCAAATGCCCATGTCCCCTATGGCAGCCCAAATGCCCATGTCCCCTATGGCAGCACCAGGTCCTATGTCCCCTATGGGAGCACTCGGAGGATTTAGGGAGCCATTAATGGATGCAAGACTTTCTCCTGTACCGATGCGACGACAAATCCCTCCTGGATCTCCACAACTCTCCATGCACCCTTCTGGAGGATTTCCTGGAAGACGAAGCCCCTCACCACAACCCTCTATACGTCAATTTGGAGCTAGTGGAATGCCCCCTTCTCCAACACTAAGCAGAGGAATGCCATCGCAAGTTCAACGTCCCGCTTCTCCTTTTGGACGAAAAAGAGGAAGTCCACCTGCCTCCCCAGCACTCTCCAGAGGTTTCCAACCTCAAAGTTCATTCATAGAGGCAACACCATCCCCCCAGCCTATGCCTCACCATATGGCCCCACGAGGAGTATCTCCTCGTGCTAGCCCTCCTGCTTCCCCCCGTGCTTCCATCCGCAGACGAAGTCCACCACTTTCGCCACGTGCTTCAACAAGGAGAACCAGTCCACCTTCTTCCCCTACAATGGCTCGTCAACCATTTGGTGCCAGGAAGCTTCAGGGTTCACCCTCTCCTCCTAGGCGAGCAAGTCCTCCACCCTCCCCACAGATGAGCATGCATCCTTTGGCCAGTCTTCAGCAGAGGGATCCTGGTAGGCCACAATCCCCATTTGTTGCTCAGAGAGCATCACCTACTGCTAACAGAAGAAGCTTGGCAGTGGAATCTGAATCTGCACGACCACCATCTCCAAGTGGACGTAGACCAccctctccatctctgtctcGAAGGTCTACCCGTCTTGCAAGGGATCCACCTCCTTTTGGATCCCCTGGTGGCCGACTACGTGGAATGGGGCGTCCCAACATTCCTATGGGAGCTGTAAAACCCTCTCCTGGTCGAATGAGTCGGCGTGGTCCTCCAACACAAAATGTACCTCCTTTTAGAACCTCCATACGCAGCAACAGGTCAGTCATGCCTCAGGACTTTACATCCTCCCCACAGCTCTCAGGCCAACACCCTGGGTTTGCAATGAGGGAGCAGAGGCGCTTTATTCCCCCAGGTACTCCAGGCCCCACAAGGAACCCACAAAGACCAGTTGGTCGTGGCCGTCCTCTTATGGCCAGACAGTCCATGAGGCAGGCACCTCAATCACGACAACCTTCTCTAAAACGCATGGGTCCTCCATCACCCCAACCTTCTGTTAGGCATCTTTCTAGACCAACGTCTCCTCACCCCTCAATAAAACATGGCTCACCATTACCAATGCGTGCCCCATCTCCTCGCGCACCACTTTCCCCTCTCCTCTCAGGTGGTTTACCAAATTTGCAGATGTCTGGAGTACCATATTCATCTCCCTACCCTGTTGGGGTGGAGCCAATACTTGTGGGACCTGACCAATTTATAAATGTGCCACAATCTCCTGTGCTCACAGACACTCTTCAAAACCAAATGATGCCTCAAGGCTATACCTCACCAATCCAGCAGCCCATGGCATCATATCCTCCTGAGATCACAGGTATAGAGCAGTTTCCTGGGCAGCCACTTCCACCACATTTATCAAATGCTTTACAAAATCAAGCTTTACGTGAGGCTTCCTATACTTCAGTACTGCAACCTGGACTAGCTCCACAAGCTCAAGAAATTCCTATAATACAGCAGTATCCAGAGCAGATTGCATCTCCTGTTTTATCAAATGCTTTGCAAAACCCTCAGGTCCGTGGAGCCTCATACACTTCTTCCCTGCAAAGACCAGGCTCTCCATATGCAGAAGCCGTACAGCTTCCTGGTCAGCCATCATCCCCAATGCTTTCTAATGCTTTAGAAACCTCTAGTCTTCGTAGTGCTTCATTTGTTTCACCACTGCAACCACCCATATCCCCATATGCTCCCGAAATGGAGGCTTTTCCCGGTCAGCCTGTGTCTCCAGTACTGTCATCAGCTATTCAAAATCCTTACCTTCGTAATGCCTCATACACATCACCACTACAGATGCCTCCTTCTCCATATTCACAGGTGATGACAGAATATGATTACATAGAGGACCCAGGTCCTGGTCCTCAACTCACAAATGCTCTACAAAACCAAAACATCCGAAATGCGTCATACCGAACACACTTACGAAGGAGAGGATCAAGATTGCCCCCTGGTTATGGTCCAGGGGGATCACCAGCTCTGTCAAATGCTTTACAAAACCAACAAATCCGCAATGCATCTTATCAAACACAGCTAGCTTATCAAAGGGCCAACTACCCCTATGCTCCCATGGCTGGTTACGGTCAGGATCCTAGGAAGTCTCCTATTCTGACAGATGCTCTACATAATCCTCAAGTCCGTGGTGCCACCTACCGCCTCCCAGATGGCACACTGGTGCATGGAAATGAAGTGATACCTCCATCCACCTCACCAATGCTTTCGAATGCACTACAGAATCAACAGCTACGACAGGCGTCATACAGACTTTCAGATGGAACTGTAATAGGCGTACATCCCCAGCAATCCCTCTCGCCCAACCTTTCGAATGCCTTACAGAACCCAAACTTAAGACAAGCTTCTTATAGACTCCCAGATGGAAGTATAATTATGGACCCCCGTCAACAACAGCCCTCATCTCCAAATCTGTCAAATGCTTTGCAAAATCCAAACCTAAGAAATGCTTCCTACAGACTTCCAGATGGGACAATAATTATGGCAGATCAGCAGCCAACATCTCCCAACTTGTCACGAGCACTTAGAAATGAGAACATTCGAAAGGCATCTTATAGGCTGCCTGATGGGACAATAGTGTTTGCAGAGCAAGAAGTTGAGCCAACTTCTCCACTTTTGTCTAATGCACTTCAAAATCCAAACCTCAGAAATGCATCTTATAGATTGCCTGATGGCTCCATCATTTATGGACCGCCAAAACCGACCTCCCCAAATTTATCAAAAGCTCTTCAGAACCAACAAATGCGAAATGCTAATTATAGATTACCTGATGGTTCTATTATAACCACACAGGTACCAACCTCCCCAAATTTAGGAAATGCCCTTCAGAATCAAGCCATTCGTAGTGCTGCCTACAGGCTACCTGATGGCTCAATAATCAGTGCTCATCCTGTTCGGCAGCCAAATTTGTCTAGTGCTCTCAAAAATATAGATCTCAAAAGTGCTTCCTATAGGCTTCCAGATGGATCTGTCATTTCCCCAAGTGCTATGTATCAGCCAAGAAGTCCCAACATTTTAAGTGCCTTGATGAATGATGACCTTCGCAATGCCACATACACACTACCCGATGGCTCTGTTATATCAGCAGATCCTCGTAGGCATAGAAATCCACAACTTTCACAAGCCCTGTTAAACCAAAATCTCAGAAATGCTAAATACCGTTTACCTGACAGATCCATCCTCACAAAAGGCTTTGCAACCTCACCTCACCTCTCTGATGCTCTGATGAATGCTGAACTCAAAAAGGCCAGTTATCAGTTGCCTTCAGGAATGTGCACTGTGACAAAATCTGGCTTGATCATTGGGCCAGATGGCAGGTATGCAGTGGTAACCCCACAGAGGAAAGGTCCTGAGGACCACTGGGCccagaatgagagagaaggaCAAAGCGCAGAAGATATGTGGGCATCAGAGAAGGTTCTGCCTCATGGTACAGTGCAGAATCTTATCAAGTGGTCTGTTTATCGTGATGACAAAATGGACCACCTTACACCCCCACCCTTTGTCCCTGGGTCCAAGGAGGCACAAGTACACTGGGTCCCAGATCGGCAAGGCGAGCCCACTGGTCACTGGTATGACAAGATGTACTCTGTAAGGAGTATGCCCACTATGAGATAccgagagaaaagagaaggtgATGGACTTGAGGATATGACACAGTTGGCGTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022674356.1 True 5667 mRNA 0.48 2 22509446 22517576

Neighbor

gene id symbol gene type direction distance location
LOC103046323 LOC108441470 coding upstream 29018 22313226 ~ 22480428 (+)
LOC103035679 NA coding upstream 575051 21926349 ~ 21934395 (+)
LOC103037976 LOC103037976,LOC108437127 coding upstream 893010 21611572 ~ 21616436 (+)
nrp2 nrp2,nrp2a,LOC107556288,LOC107750056,LOC107749808 coding upstream 947792 21417436 ~ 21561654 (+)
mdh1b NA coding upstream 1552413 20944945 ~ 20957033 (+)
alkbh5 alkbh5 coding downstream 75062 22592638 ~ 22599854 (+)
LOC103042026 mief2,LOC107725398,LOC107564637,LOC108258856,LOC107692671 coding downstream 83634 22601210 ~ 22616958 (+)
LOC103042343 NA coding downstream 101454 22619030 ~ 22631714 (+)
LOC103041008 slc29a4,LOC108439098 coding downstream 154137 22671713 ~ 22689088 (+)
LOC103039247 LOC108439081 coding downstream 244862 22762438 ~ 22774207 (+)
G105581 LOC103043780 non-coding upstream 18704 22488238 ~ 22490742 (+)
G105580 NA non-coding upstream 42647 22409426 ~ 22466799 (+)
G105547 NA non-coding upstream 255833 22253376 ~ 22253613 (+)
G105542 NA non-coding upstream 278126 22231007 ~ 22231320 (+)
G105501 NA non-coding upstream 516883 21990430 ~ 21992563 (+)
G105645 NA non-coding downstream 174075 22691651 ~ 22692463 (+)
G105654 NA non-coding downstream 188924 22706500 ~ 22706805 (+)
G105668 NA non-coding downstream 261694 22779270 ~ 22791181 (+)
G105760 LOC108439083,LOC107725390,LOC107692695,LOC107722958,LOC107564541,LOC107590710 non-coding downstream 407541 22925117 ~ 22928356 (+)
G105793 NA non-coding downstream 610379 23127955 ~ 23128154 (+)
LOC103046939 LOC107701771,LOC107725347,LOC107565259 other upstream 225993 22255085 ~ 22283453 (+)
G105357 NA other upstream 1140242 21327192 ~ 21369204 (+)
G105276 NA other upstream 1453963 20989273 ~ 21055483 (+)
G105312 abcb6,abcb6a,LOC107556273,LOC107750068 other upstream 1480456 21019038 ~ 21028990 (+)
nfkbiz nfkbiz other upstream 2764522 19734226 ~ 19744924 (+)
LOC103045705 LOC107725350,LOC107692700,LOC108439093,LOC107565240,LOC108441473 other downstream 7681 22525257 ~ 22588961 (+)
LOC103038624 zgc:77849,LOC103038624,LOC108439082,LOC107722949,LOC107692663,LOC107590708,LOC107564565 other downstream 292503 22810079 ~ 22820096 (+)
G106017 si:ch73-12o23.1,LOC108439175,LOC108258846,LOC107722961,LOC107590719 other downstream 1398059 23915635 ~ 23923771 (+)
G106036 NA other downstream 1469631 23987207 ~ 23989592 (+)
G106146 NA other downstream 1893632 24411208 ~ 24413098 (+)

Expression


Co-expression Network