LOC103025458


Basic Information

Item Value
gene id LOC103025458
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 25423712 ~ 25449279 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022674361.1
ATGGTGGAGATGTTGGAGTTACGTTTTAAACTAGTTGGAGCAGCTGCTCCTCTTGTTGCTGAAGCTGGTGAAGATCTGGTTCTGCCCTGTTCTCTCCAACCCAGCTTCAGTGCTGAGGGCGTGATCGTGGAGTGGATCAGACAGcatgagacagacagacaagttcATCTGTATGAAGATTATAAAGACAGAAATGATAATCAGATGGAGTCTTACAGAGGGagaacagctctgtttaaagaaGAACTGAAGAAAGGAAACGCCTCACTGAAACTCTCAGCACTCCAACCTTCTGATGATGGAGCTTACAAGTGTTTAATTAGATCATTCGACTGGTATGATGATGTGACTCTGTATGTTGAAGTTAAAGGAAAAGGATTTCATGGTTGGAAGATTGCCATtatctgcatttttgtttttgctgttattTTAACTGCCTTTATAGTATACATCTTAAAagATAAATATTCAAAAAAGCAGCTCTCTCCTACACAGTGCTCAGTTATAACCTACATGCGTCTCCACACCGAGAATCCCCGCAAAGAGCTGGACCTGAGCAAATTCAACACATCAGAGGAAGGATACAGGAGACTCATTCCAGCTGTATCAAACTGCAGGAAGGCTCAaTTAGCTGGCTGTAATCTCACTGAGCAGTCTATTGAAACCTTAAGTACAGCTCTACAGTCAGGAAGCTCcaccctgaaagagctggacctcagtaacaacaACCTCCAGGGATCAAGGATGGAGAAACTCTCTGCTGGACTAAAGAGTTcaaactgtaaactggagataCTCAGATTATCTACCTgtaaactcagtaaacactCATGCGAGTATCTGCAGTCAGTTTTACAGTCAGAAAAATCCTCACTGATAGAGCTGGACCTCACTAACAACAACCTGGAGGATTCAGGAATGGAGAaactctctgctggactgaagagttcacattGTAAACTGGAGATACTCAGACTAGCTTTGTGTAATCTTGGGGAACAGTCCTGTGAGAGTCTGGGATTAATTTTAAAACTGGAAACCTCCTCCCTGAAAGTGCTGGATCTCAGTAataatgacctgcaggattcaggagtggagaaACTCTGTTCTgaactgaagagttcacactgtaaactggagataCTCAGGTTATCTGGTTGTATGATCACAGAGAAAGGATGTTCATCTCTGGCGTCATCTTTGAGTTCAAACTTGAAAGAAATAGATCTGACCTACAATAACCCAGAAGGGTCTGGAGTGAAGGAGCTCTCTGCTAAACTGGAGGATCCACACTGCAATCTCAGCACACtcaggtatgtgtgtgtatgtgtactgTTTGTGTTTAAGACACTTTTAGTCAAATTAGAGAGCTTGATGAGTGAGAATATGCTTATTTGGCTTTCCACCATGAGAGCTCCATTACTTCTCCATTACTTCAAATGCACTACCATTGACTTGTACTACCAATACATACTGCTACTGTTTAACATTTCACATGAATGaatagtgtgaaaaaataaCCTGGAAGAGAGCAAGAGCGAGAGAATTATTAGACTAGTGGTCGACAATTTAATTTGCccgggaggaatgtaaacaaaagctcgaaAATAAGGCTGCAACATTGTTCTCACCAAGAAAATCTTACCCTCCTGCCATCTGTAAAAATCTAAGCCAAACACCTAATTAACGCTCCACATGGCTATTTTATTCAAAGTCAAGCTTGTAATGGGTGGATAcagacagaacaagaaaaagtgacCAGTTTTTGCAAACTGTGTACAACATTTTCTGGACCAAGAGTCAAGGTTGAGACCAAGGTTCCCAAAGGAACCTGAACAGATCCCATTCCCTCTTCAAACACTGCCtatcttttaaaatatatatcacataAGACTGAACATTAAACATCTAGGCTAGTAAGGTTtttaagtttaatgtttttatttgtaaaatcaAGAGATCAATAAACCAATATTTGTACTGTAAATTTAGATCTATGAACACagcaaattatataattttcctCTATTTTCTAACACACTGCTGCAGAGCAAGAGATTGTCCTCCCAAATATCATTTGCAGGAACTTCCTGTTGTTGCACCTGTAAAGCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022674361.1 True 2112 mRNA 0.40 8 25423712 25449279

Neighbor

gene id symbol gene type direction distance location
LOC111193564 NA coding upstream 1454 25419540 ~ 25422258 (+)
LOC103023109 NA coding upstream 37412 25382872 ~ 25386300 (+)
LOC103022503 NA coding upstream 48880 25372806 ~ 25374832 (+)
slitrk6 slitrk6,LOC107674010,LOC107730399,LOC107558904,LOC107737039,LOC107574216,LOC107698122 coding upstream 321139 25076936 ~ 25102573 (+)
gpc6 LOC108414264,LOC105911916,LOC107730398,LOC101477426,LOC100710496,LOC107744956 coding upstream 1308251 23970691 ~ 24115461 (+)
LOC111193460 NA coding downstream 35564 25484843 ~ 25519366 (+)
ube2f ube2f,LOC107725407,LOC107674019,LOC107556276,LOC107707607,LOC107566887 coding downstream 290948 25740227 ~ 25759643 (+)
LOC103038099 erbb4,LOC108441681,LOC108440448,LOC101079286 coding downstream 314568 25763847 ~ 26023673 (+)
LOC111193484 NA coding downstream 626419 26075698 ~ 26078799 (+)
LOC103039357 NA coding downstream 739686 26188965 ~ 26193144 (+)
G106255 NA non-coding upstream 20800 25360085 ~ 25402912 (+)
LOC103043670 NA non-coding upstream 21907 25400917 ~ 25401805 (+)
G106250 NA non-coding upstream 210243 25213203 ~ 25213469 (+)
G106248 NA non-coding upstream 211636 25211579 ~ 25212076 (+)
G106220 NA non-coding upstream 514683 24908744 ~ 24909029 (+)
G106274 NA non-coding downstream 2858 25452137 ~ 25542268 (+)
G106273 NA non-coding downstream 6841 25456120 ~ 25548983 (+)
G106277 NA non-coding downstream 55527 25504806 ~ 25530624 (+)
G106281 NA non-coding downstream 74298 25523577 ~ 25526560 (+)
G106282 NA non-coding downstream 77590 25526869 ~ 25527333 (+)
LOC111193563 NA other upstream 54273 25361744 ~ 25369439 (+)
G106146 NA other upstream 1010614 24411208 ~ 24413098 (+)
G106036 NA other upstream 1434120 23987207 ~ 23989592 (+)
G106017 si:ch73-12o23.1,LOC108439175,LOC108258846,LOC107722961,LOC107590719 other upstream 1499941 23915635 ~ 23923771 (+)
LOC103038624 zgc:77849,LOC103038624,LOC108439082,LOC107722949,LOC107692663,LOC107590708,LOC107564565 other upstream 2603616 22810079 ~ 22820096 (+)
LOC111193565 NA other downstream 9536 25458815 ~ 25570821 (+)
LOC103037236 NA other downstream 705138 26154417 ~ 26171801 (+)
G106661 lancl1 other downstream 2565237 28014516 ~ 28022047 (+)
G106673 NA other downstream 2617073 28066352 ~ 28066983 (+)
LOC103027743 NA other downstream 3253788 28703067 ~ 28724026 (+)

Expression


Co-expression Network